Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P16_F_K03
(742 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_25394| Best HMM Match : CBFD_NFYB_HMF (HMM E-Value=1.7e-11) 58 6e-09
SB_42202| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.0
SB_27289| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 4.0
SB_6876| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 4.0
SB_56523| Best HMM Match : Pox_A_type_inc (HMM E-Value=0) 29 4.0
SB_55025| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.9
SB_23611| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.9
SB_20654| Best HMM Match : Helicase_C (HMM E-Value=2.3e-21) 28 6.9
SB_37031| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 9.1
>SB_25394| Best HMM Match : CBFD_NFYB_HMF (HMM E-Value=1.7e-11)
Length = 149
Score = 58.4 bits (135), Expect = 6e-09
Identities = 27/91 (29%), Positives = 53/91 (58%)
Frame = +1
Query: 397 REQDRFLPIANIAKIMKRAIPENGKIAKDARECVQECISEFISFVTSEASDRCKVEKRKT 576
+ +D LP A + +++K A+P+ I+K+AR + + S F+ + TS A++ KRKT
Sbjct: 4 KPEDLNLPNAVVVRLVKEALPDGVSISKEARSAIGKAASVFVLYATSCANNFALSHKRKT 63
Query: 577 INGEDVLFALNTLGFDNYVKPLRLYLTKYRE 669
+ DV+ AL + F+ ++ L+ L +++
Sbjct: 64 LQATDVISALEDMEFEQFIPQLKQDLNAFQK 94
>SB_42202| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 783
Score = 29.5 bits (63), Expect = 3.0
Identities = 23/102 (22%), Positives = 45/102 (44%), Gaps = 2/102 (1%)
Frame = +1
Query: 334 SDDVLEDENNSDSGSKSNAPLREQDRFLPIANIAK--IMKRAIPENGKIAKDARECVQEC 507
S+D + NN G S+ R++ I + K + K+ +G+ AR +
Sbjct: 444 SEDSDTNNNNKSEGHLSSHEKRQKKLKQKIQELEKENLSKKPWQMSGETGSKARP-INSL 502
Query: 508 ISEFISFVTSEASDRCKVEKRKTINGEDVLFALNTLGFDNYV 633
+ E ++F + + + K + KT+ + F +T+ D YV
Sbjct: 503 LEEDLNFDHTAVAAQKKADGHKTLTAINPTFRASTVPSDKYV 544
>SB_27289| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 605
Score = 29.1 bits (62), Expect = 4.0
Identities = 15/50 (30%), Positives = 25/50 (50%)
Frame = +1
Query: 388 APLREQDRFLPIANIAKIMKRAIPENGKIAKDARECVQECISEFISFVTS 537
APL + + LP+ N AKI+ I + K EC+++ + F+ S
Sbjct: 426 APLTIEGKELPVVNSAKILGLTISNDLKWNDHVLECIKKANKRRLYFIVS 475
>SB_6876| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 362
Score = 29.1 bits (62), Expect = 4.0
Identities = 19/61 (31%), Positives = 32/61 (52%), Gaps = 4/61 (6%)
Frame = +1
Query: 247 LIMDSDEL---GNDLVRLD-NGFLVADDTFVVNSDDVLEDENNSDSGSKSNAPLREQDRF 414
+I+D+D + G+D V D + F+V DD V D+V +D +N G N + + D
Sbjct: 270 VIVDNDTVVIVGDDNVADDYDNFIVGDDDNVDGDDNVADDYDNFIVGDDDNVIVGDDDNV 329
Query: 415 L 417
+
Sbjct: 330 I 330
>SB_56523| Best HMM Match : Pox_A_type_inc (HMM E-Value=0)
Length = 2858
Score = 29.1 bits (62), Expect = 4.0
Identities = 15/49 (30%), Positives = 27/49 (55%)
Frame = +1
Query: 259 SDELGNDLVRLDNGFLVADDTFVVNSDDVLEDENNSDSGSKSNAPLREQ 405
++EL ND+V ++ + A+D + + EN D+ K NA L++Q
Sbjct: 892 ANELENDIVAANSDKVQAEDDLYAMQGKIGKLENQIDTLRKQNAQLKDQ 940
>SB_55025| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 2468
Score = 28.3 bits (60), Expect = 6.9
Identities = 14/41 (34%), Positives = 20/41 (48%)
Frame = +1
Query: 256 DSDELGNDLVRLDNGFLVADDTFVVNSDDVLEDENNSDSGS 378
D DE G L+ + ++ DD F V DD + + D GS
Sbjct: 468 DDDEDGGSLMEEETADMMQDDAFAVYEDDNVFLQIRDDGGS 508
>SB_23611| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 126
Score = 28.3 bits (60), Expect = 6.9
Identities = 17/54 (31%), Positives = 25/54 (46%), Gaps = 1/54 (1%)
Frame = +1
Query: 259 SDELGNDLVRLDNGFLVA-DDTFVVNSDDVLEDENNSDSGSKSNAPLREQDRFL 417
SDE G D+ R D+ DD +D +DE + D GS + R + F+
Sbjct: 10 SDEEGEDITREDDDDEEEEDDDEDFEDEDDYDDEYDEDEGSSARRKRRRESGFI 63
>SB_20654| Best HMM Match : Helicase_C (HMM E-Value=2.3e-21)
Length = 1728
Score = 28.3 bits (60), Expect = 6.9
Identities = 15/37 (40%), Positives = 22/37 (59%)
Frame = +1
Query: 331 NSDDVLEDENNSDSGSKSNAPLREQDRFLPIANIAKI 441
NSDD+L DEN S S S+A E ++ + N+ K+
Sbjct: 1169 NSDDLLGDENMSSSSLPSDAEFNEFHPWI-VDNVRKL 1204
>SB_37031| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 100
Score = 27.9 bits (59), Expect = 9.1
Identities = 14/36 (38%), Positives = 22/36 (61%)
Frame = +1
Query: 262 DELGNDLVRLDNGFLVADDTFVVNSDDVLEDENNSD 369
D++G D+ DN F+V DD + DD +D++N D
Sbjct: 39 DDVG-DIADDDNAFVVLDDDDDDDDDDDDDDDDNDD 73
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,463,687
Number of Sequences: 59808
Number of extensions: 418161
Number of successful extensions: 1316
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 1013
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1306
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1998111622
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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