Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P16_F_K02
         (786 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ414247-1|ABD63009.2|  414|Tribolium castaneum paired protein.        25   0.91 
AJ223627-1|CAA11500.1|  371|Tribolium castaneum orthodenticle-1 ...    23   2.8  
AJ223614-1|CAA11490.1|  301|Tribolium castaneum orthodenticle-2 ...    23   2.8  
AM295015-1|CAL25730.1|  549|Tribolium castaneum ecdysone recepto...    23   3.7  
AY563109-1|AAS99587.1|   46|Tribolium castaneum aristaless protein.    21   8.4  
AJ415419-1|CAC94468.1|  441|Tribolium castaneum transcription fa...    21   8.4  
AF356647-1|AAK43700.1| 1156|Tribolium castaneum teashirt-like pr...    21   8.4  

>DQ414247-1|ABD63009.2|  414|Tribolium castaneum paired protein.
          Length = 414

 Score = 24.6 bits (51), Expect = 0.91
 Identities = 11/36 (30%), Positives = 19/36 (52%)
 Frame = +2

Query: 320 ELKLLFANQSEDDILLRDELERYQREHPSQFQVWYT 427
           EL+  F      DI  R+EL +  +   ++ QVW++
Sbjct: 234 ELEKAFERTQYPDIYTREELAQRTKLTEARIQVWFS 269



 Score = 23.4 bits (48), Expect = 2.1
 Identities = 10/24 (41%), Positives = 16/24 (66%)
 Frame = +2

Query: 365 LRDELERYQREHPSQFQVWYTIDR 436
           + + +E+Y+RE+PS F  W   DR
Sbjct: 117 VENRIEQYKRENPSIFS-WEIRDR 139


>AJ223627-1|CAA11500.1|  371|Tribolium castaneum orthodenticle-1
           protein protein.
          Length = 371

 Score = 23.0 bits (47), Expect = 2.8
 Identities = 12/34 (35%), Positives = 18/34 (52%)
 Frame = +2

Query: 323 LKLLFANQSEDDILLRDELERYQREHPSQFQVWY 424
           L+ LFA     DI +R+E+        S+ QVW+
Sbjct: 142 LEGLFAKTRYPDIFMREEVAVKINLPESRVQVWF 175


>AJ223614-1|CAA11490.1|  301|Tribolium castaneum orthodenticle-2
           protein protein.
          Length = 301

 Score = 23.0 bits (47), Expect = 2.8
 Identities = 11/34 (32%), Positives = 17/34 (50%)
 Frame = +2

Query: 323 LKLLFANQSEDDILLRDELERYQREHPSQFQVWY 424
           L+ LF      DI +R+E+        S+ QVW+
Sbjct: 84  LEALFGKTRYPDIFMREEVALKINLPESRVQVWF 117


>AM295015-1|CAL25730.1|  549|Tribolium castaneum ecdysone receptor
           (isoform A) protein.
          Length = 549

 Score = 22.6 bits (46), Expect = 3.7
 Identities = 10/33 (30%), Positives = 20/33 (60%)
 Frame = +2

Query: 350 EDDILLRDELERYQREHPSQFQVWYTIDRPTDG 448
           +++++ R    + + EHPS+  V   I++P DG
Sbjct: 315 QEELIHRLVYFQNEYEHPSEEDVKRIINQPMDG 347


>AY563109-1|AAS99587.1|   46|Tribolium castaneum aristaless protein.
          Length = 46

 Score = 21.4 bits (43), Expect = 8.4
 Identities = 10/35 (28%), Positives = 17/35 (48%)
 Frame = +2

Query: 320 ELKLLFANQSEDDILLRDELERYQREHPSQFQVWY 424
           EL+  F+     D+  R+EL        ++ QVW+
Sbjct: 11  ELEKAFSRTHYPDVFTREELAMKIGLTEARIQVWF 45


>AJ415419-1|CAC94468.1|  441|Tribolium castaneum transcription
           factor protein.
          Length = 441

 Score = 21.4 bits (43), Expect = 8.4
 Identities = 7/24 (29%), Positives = 14/24 (58%)
 Frame = +3

Query: 279 SWSDIYALTSTTAPN*SCYSRTKA 350
           +WS +   T+  +P  +C+S T +
Sbjct: 306 TWSTVQTPTTVMSPTINCWSLTSS 329


>AF356647-1|AAK43700.1| 1156|Tribolium castaneum teashirt-like protein
            protein.
          Length = 1156

 Score = 21.4 bits (43), Expect = 8.4
 Identities = 11/38 (28%), Positives = 20/38 (52%)
 Frame = +2

Query: 86   GKLSQYLNNMKINDTIDVRGPSGRLQYTGNGTFLIKKL 199
            G LS   +++  N+T D   PSG  + + +    ++KL
Sbjct: 960  GALSSMFDSLSGNNTGDALAPSGGKKGSSHPLAALQKL 997


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 185,930
Number of Sequences: 336
Number of extensions: 4076
Number of successful extensions: 11
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11
length of database: 122,585
effective HSP length: 56
effective length of database: 103,769
effective search space used: 21272645
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)