Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P16_F_K02
(786 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC970.03 |||cytochrome b5 reductase |Schizosaccharomyces pombe... 138 8e-34
SPAC17H9.12c |||NADH-cytochrome reductase|Schizosaccharomyces po... 39 0.001
SPCC1795.08c |||histone acetyltransferase complex subunit |Schiz... 28 1.3
SPAC869.02c |||nitric oxide dioxygenase |Schizosaccharomyces pom... 28 1.7
SPAC1296.06 |||NADPH cytochrome reductase|Schizosaccharomyces po... 27 4.0
SPAC10F6.10 |||protein kinase, RIO family |Schizosaccharomyces p... 27 4.0
SPAC20G8.10c ||SPAC3A12.01c|beclin family protein|Schizosaccharo... 26 5.3
SPBC30D10.16 |pha2||phrenate dehydratase|Schizosaccharomyces pom... 26 5.3
SPAC1805.03c |trm13||tRNA 2'-O-methyltransferase Trm13 |Schizosa... 26 5.3
SPAC23G3.01 |rpb2|SPAC521.06|DNA-directed RNA polymerase II comp... 26 7.0
SPBC3B9.03 |||signal recognition particle receptor alpha subunit... 25 9.3
SPBP35G2.09 |usp103|yhc1|U1 snRNP-associated protein Usp103 |Sch... 25 9.3
>SPCC970.03 |||cytochrome b5 reductase |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 301
Score = 138 bits (334), Expect = 8e-34
Identities = 79/199 (39%), Positives = 116/199 (58%), Gaps = 1/199 (0%)
Frame = +2
Query: 2 VSSDEDKGYVDLVIKVYFKNVHPKFPEGGKLSQYLNNMKINDTIDVRGPSGRLQY-TGNG 178
+SSD DKGY DL++K Y GK+S+ + +KI DTI VRGP G ++ TG
Sbjct: 116 LSSDADKGYFDLLVKSY---------PNGKVSKKFSELKIGDTIGVRGPKGNWKHRTG-- 164
Query: 179 TFLIKKLRKDPPTKVVVKKLNLIAGGTGIAPMLQLVRHICTDVNDRTELKLLFANQSEDD 358
+ + +IAGGTGI PMLQ++R + ++ D TE+ LL+AN SE D
Sbjct: 165 ---------------LARHFGMIAGGTGITPMLQIIRAVLSNFEDPTEITLLYANVSEGD 209
Query: 359 ILLRDELERYQREHPSQFQVWYTIDRPTDGWKYSSGFINDEMIRDHLFPPSNDVLVLMCG 538
I+LRDE++ ++ P +F V Y ++ P + WK S GF+ E+I+ H PS + VL+CG
Sbjct: 210 IVLRDEIDALAKKDP-RFTVHYVLNNPPENWKGSVGFVTQELIKAHFPAPSPETKVLICG 268
Query: 539 PPPMINFACNPALDKLGFK 595
P PM+N + A LG++
Sbjct: 269 PTPMVN-SLREATVALGYE 286
>SPAC17H9.12c |||NADH-cytochrome reductase|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 266
Score = 38.7 bits (86), Expect = 0.001
Identities = 43/167 (25%), Positives = 77/167 (46%)
Frame = +2
Query: 80 EGGKLSQYLNNMKINDTIDVRGPSGRLQYTGNGTFLIKKLRKDPPTKVVVKKLNLIAGGT 259
E G +S Y+++ K DTI++RGP F KL ++V I GT
Sbjct: 111 EEGPVSSYIHSKKEGDTIELRGP-----------FKTTKLDCTKYPRIVA-----IVAGT 154
Query: 260 GIAPMLQLVRHICTDVNDRTELKLLFANQSEDDILLRDELERYQREHPSQFQVWYTIDRP 439
GIAP+ QL + + ++ + +++ ++ LL++ELE +E P+ +V +R
Sbjct: 155 GIAPIYQLAQSV------KSPVDIVYCSRPGQPPLLKEELE---KECPN-VRVKSVQNRL 204
Query: 440 TDGWKYSSGFINDEMIRDHLFPPSNDVLVLMCGPPPMINFACNPALD 580
+ I+D + D++ P D L ++CG ++ P D
Sbjct: 205 VN--------IHDILDWDNVTVPLKDTLCIVCGSQKFVSTIAGPKAD 243
>SPCC1795.08c |||histone acetyltransferase complex subunit
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 985
Score = 28.3 bits (60), Expect = 1.3
Identities = 19/55 (34%), Positives = 25/55 (45%), Gaps = 1/55 (1%)
Frame = +2
Query: 455 YSSGFINDEMIRDHLFPPSNDVL-VLMCGPPPMINFACNPALDKLGFKPDQRFAY 616
Y++ F +D + + N VL V M GPP N C +K P RFAY
Sbjct: 580 YNAVFSDDIFVTTNSEQIQNCVLNVPMYGPPTENNEYCEEISEKYPITPVSRFAY 634
>SPAC869.02c |||nitric oxide dioxygenase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 427
Score = 27.9 bits (59), Expect = 1.7
Identities = 20/75 (26%), Positives = 37/75 (49%), Gaps = 1/75 (1%)
Frame = +2
Query: 83 GGKLSQYLN-NMKINDTIDVRGPSGRLQYTGNGTFLIKKLRKDPPTKVVVKKLNLIAGGT 259
GG +S +++ N+K+ D + V P+ G F+ K+ ++ V + L AGG
Sbjct: 256 GGVVSNFVHDNLKVGDIVGVSPPA--------GNFVYKRSEEN-----VNRPLLCFAGGI 302
Query: 260 GIAPMLQLVRHICTD 304
GI P++ ++ D
Sbjct: 303 GITPLIPIIETALLD 317
>SPAC1296.06 |||NADPH cytochrome reductase|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 558
Score = 26.6 bits (56), Expect = 4.0
Identities = 17/57 (29%), Positives = 28/57 (49%), Gaps = 1/57 (1%)
Frame = +2
Query: 230 KKLNLIAGGTGIAPMLQLVRHICTDVNDRTELKLLFANQSED-DILLRDELERYQRE 397
K L ++ GTG+AP+ L++ N E L F +++ D L + E+Y E
Sbjct: 413 KPLIMVGPGTGVAPLRALIQE--RIYNGLKENLLFFGCRNKSMDFLFEKDWEKYTEE 467
>SPAC10F6.10 |||protein kinase, RIO family |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 521
Score = 26.6 bits (56), Expect = 4.0
Identities = 9/18 (50%), Positives = 14/18 (77%)
Frame = +2
Query: 92 LSQYLNNMKINDTIDVRG 145
LS+Y+NN+K+ND + G
Sbjct: 68 LSRYVNNIKLNDRFEAEG 85
>SPAC20G8.10c ||SPAC3A12.01c|beclin family
protein|Schizosaccharomyces pombe|chr 1|||Manual
Length = 464
Score = 26.2 bits (55), Expect = 5.3
Identities = 15/31 (48%), Positives = 22/31 (70%)
Frame = +3
Query: 135 MSVDRQGDCSTQETEHSSLRN*EKIRLQKLS 227
+S++RQ DC+ E EH+S R EK LQK++
Sbjct: 249 LSLERQYDCANLEFEHNS-RKLEK--LQKMN 276
>SPBC30D10.16 |pha2||phrenate dehydratase|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 287
Score = 26.2 bits (55), Expect = 5.3
Identities = 15/52 (28%), Positives = 26/52 (50%), Gaps = 2/52 (3%)
Frame = +2
Query: 281 LVRHICTDVNDRTELKLLFANQSEDDI--LLRDELERYQREHPSQFQVWYTI 430
LV++I D N+RT LL + +DD+ L L ++ HP + + +
Sbjct: 176 LVKNIEDDSNNRTRFLLLRSGGFQDDLSPLKEKSLLQFYLSHPKKLSAVFEV 227
>SPAC1805.03c |trm13||tRNA 2'-O-methyltransferase Trm13
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 407
Score = 26.2 bits (55), Expect = 5.3
Identities = 13/39 (33%), Positives = 20/39 (51%)
Frame = +2
Query: 368 RDELERYQREHPSQFQVWYTIDRPTDGWKYSSGFINDEM 484
R EL RY + Q V+ IDR ++ K+ S + D +
Sbjct: 187 RAELSRYVQHCSQQENVYILIDRDSNRTKHDSRILKDSI 225
>SPAC23G3.01 |rpb2|SPAC521.06|DNA-directed RNA polymerase II complex
subunit Rpb2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1210
Score = 25.8 bits (54), Expect = 7.0
Identities = 14/46 (30%), Positives = 23/46 (50%)
Frame = +2
Query: 197 LRKDPPTKVVVKKLNLIAGGTGIAPMLQLVRHICTDVNDRTELKLL 334
+R D P +V + L G+ P ++ HIC D ND L+++
Sbjct: 262 IRSDIPIVIVFRAL-------GVVPDRDILEHICYDPNDFQMLEMM 300
>SPBC3B9.03 |||signal recognition particle receptor alpha subunit
Srp101|Schizosaccharomyces pombe|chr 2|||Manual
Length = 547
Score = 25.4 bits (53), Expect = 9.3
Identities = 12/44 (27%), Positives = 23/44 (52%)
Frame = +2
Query: 80 EGGKLSQYLNNMKINDTIDVRGPSGRLQYTGNGTFLIKKLRKDP 211
+ SQ ++N +++ + G + + Q TG+G +I L DP
Sbjct: 191 QASSASQTVDNSQLSSIV---GNNNKFQKTGSGDVIISDLEMDP 231
>SPBP35G2.09 |usp103|yhc1|U1 snRNP-associated protein Usp103
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 182
Score = 25.4 bits (53), Expect = 9.3
Identities = 10/20 (50%), Positives = 12/20 (60%)
Frame = +2
Query: 494 HLFPPSNDVLVLMCGPPPMI 553
+ FPP +V L C PPP I
Sbjct: 72 YAFPPKYNVFNLGCPPPPYI 91
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,279,610
Number of Sequences: 5004
Number of extensions: 69588
Number of successful extensions: 196
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 186
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 194
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 381366860
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -