Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P16_F_K02
         (786 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_52888| Best HMM Match : FAD_binding_6 (HMM E-Value=0)              149   2e-36
SB_23418| Best HMM Match : NAD_binding_1 (HMM E-Value=1.2e-16)         89   5e-18
SB_22666| Best HMM Match : Peptidase_M10 (HMM E-Value=9.3e-37)         62   7e-10
SB_576| Best HMM Match : RVT_1 (HMM E-Value=0)                         54   1e-07
SB_53447| Best HMM Match : DUF924 (HMM E-Value=3.6e-17)                31   0.80 
SB_19322| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   1.1  
SB_38291| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   1.1  
SB_46577| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   1.8  
SB_9344| Best HMM Match : No HMM Matches (HMM E-Value=.)               29   4.3  
SB_1852| Best HMM Match : WD40 (HMM E-Value=1.7)                       29   5.6  
SB_42288| Best HMM Match : Transglut_N (HMM E-Value=9.2e-34)           28   7.5  
SB_42160| Best HMM Match : RVT_1 (HMM E-Value=0)                       28   7.5  
SB_55307| Best HMM Match : HEAT (HMM E-Value=2.4e-11)                  28   7.5  

>SB_52888| Best HMM Match : FAD_binding_6 (HMM E-Value=0)
          Length = 231

 Score =  149 bits (362), Expect = 2e-36
 Identities = 67/115 (58%), Positives = 87/115 (75%)
 Frame = +2

Query: 2   VSSDEDKGYVDLVIKVYFKNVHPKFPEGGKLSQYLNNMKINDTIDVRGPSGRLQYTGNGT 181
           V+SD++KG+ +LVIKVYFKNVHPKFPEGGK+SQYL ++KI DT+D+RGP+G+L Y G GT
Sbjct: 117 VTSDDEKGFFELVIKVYFKNVHPKFPEGGKMSQYLESLKIGDTVDIRGPAGKLIYKGRGT 176

Query: 182 FLIKKLRKDPPTKVVVKKLNLIAGGTGIAPMLQLVRHICTDVNDRTELKLLFANQ 346
             IK+  + P      K L LIAGGTGI PMLQ+++ +  D  D T + L+FANQ
Sbjct: 177 ISIKESIRKPEQLRKAKFLGLIAGGTGITPMLQIIKAVLKDSGDHTTVSLIFANQ 231


>SB_23418| Best HMM Match : NAD_binding_1 (HMM E-Value=1.2e-16)
          Length = 594

 Score = 88.6 bits (210), Expect = 5e-18
 Identities = 49/112 (43%), Positives = 68/112 (60%), Gaps = 6/112 (5%)
 Frame = +2

Query: 224 VVKKLNLIAGGTGIAPMLQLVRH-ICTDVNDRTELKLLFANQSEDDILLRDELERYQREH 400
           V K + LIAGGTG  PM++++R  I  D      +KLLFANQ E DIL R +L+      
Sbjct: 241 VAKDVCLIAGGTGFTPMVRIIRKLIVEDPKATVSVKLLFANQEEKDILWRKQLDDLVEAS 300

Query: 401 PSQFQVWYTIDRPTDGWKYSSGFINDEMIRDHLFPP-----SNDVLVLMCGP 541
             +FQV YTI +PT  W+   G I++EM+ D L PP     ++D+L+ +CGP
Sbjct: 301 NQRFQVLYTISKPTAEWEGYEGRISNEMLLDALPPPPAEKNASDLLIGICGP 352


>SB_22666| Best HMM Match : Peptidase_M10 (HMM E-Value=9.3e-37)
          Length = 359

 Score = 61.7 bits (143), Expect = 7e-10
 Identities = 40/109 (36%), Positives = 63/109 (57%), Gaps = 6/109 (5%)
 Frame = +2

Query: 230 KKLNLIAGGTGIAPMLQLVRHICTDVNDRTELKLLFANQSEDDILLRDELERYQREHPSQ 409
           +++ ++A GTGIAPMLQ++  I  +  D T +KLLF+ +  ++IL++DEL+  +++H   
Sbjct: 228 RRIFMLAAGTGIAPMLQVIGQILDNDKDDTMVKLLFSCRHYEEILMKDELDN-RKDH-WN 285

Query: 410 FQVWYTIDRPTDGW-KYSS----GFINDEMIRDHL-FPPSNDVLVLMCG 538
           F V Y I +  D   KY      G I+  ++   L   P   V VLMCG
Sbjct: 286 FDVLYIISQEDDAQVKYGDHVHFGRIDQALLSSQLPSTPDPSVQVLMCG 334


>SB_576| Best HMM Match : RVT_1 (HMM E-Value=0)
          Length = 1444

 Score = 54.4 bits (125), Expect = 1e-07
 Identities = 22/47 (46%), Positives = 35/47 (74%)
 Frame = +2

Query: 323 LKLLFANQSEDDILLRDELERYQREHPSQFQVWYTIDRPTDGWKYSS 463
           + L+FANQ+E DIL+R+ELE    ++  QF++WYT+DRP +   ++S
Sbjct: 9   VSLIFANQTERDILVREELEFLASQNSDQFKLWYTLDRPPEADSFAS 55


>SB_53447| Best HMM Match : DUF924 (HMM E-Value=3.6e-17)
          Length = 585

 Score = 31.5 bits (68), Expect = 0.80
 Identities = 13/35 (37%), Positives = 19/35 (54%)
 Frame = -3

Query: 307 DVSAYMSDQLKHWSYASTACNQVQFLDDNFCRRIF 203
           +V    +D+LKHW   + A   +  L D FCR I+
Sbjct: 61  EVEKARNDELKHWEEDADATLALIILQDQFCRSIY 95


>SB_19322| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 4994

 Score = 31.1 bits (67), Expect = 1.1
 Identities = 21/70 (30%), Positives = 31/70 (44%)
 Frame = +2

Query: 272  MLQLVRHICTDVNDRTELKLLFANQSEDDILLRDELERYQREHPSQFQVWYTIDRPTDGW 451
            ++ LVRH  TD+N   E  ++ +  S +   L      +  E  SQF  W    RP   W
Sbjct: 4887 VITLVRHTLTDLNLAIEGTIIMSEISWESSTLGFWFTEFL-ERNSQFSAWLFQGRPNTFW 4945

Query: 452  KYSSGFINDE 481
               +GF N +
Sbjct: 4946 --MTGFFNPQ 4953


>SB_38291| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 283

 Score = 31.1 bits (67), Expect = 1.1
 Identities = 21/70 (30%), Positives = 31/70 (44%)
 Frame = +2

Query: 272 MLQLVRHICTDVNDRTELKLLFANQSEDDILLRDELERYQREHPSQFQVWYTIDRPTDGW 451
           ++ LVRH  TD+N   E  ++ +  S +   L      +  E  SQF  W    RP   W
Sbjct: 81  VITLVRHTLTDLNLAIEGTIIMSEISWESSTLGFWFTEFL-ERNSQFSAWLFQGRPNTFW 139

Query: 452 KYSSGFINDE 481
              +GF N +
Sbjct: 140 --MTGFFNPQ 147


>SB_46577| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 244

 Score = 30.3 bits (65), Expect = 1.8
 Identities = 14/35 (40%), Positives = 21/35 (60%)
 Frame = +2

Query: 305 VNDRTELKLLFANQSEDDILLRDELERYQREHPSQ 409
           +NDR  L+L+  N+   DILLR E  +Y+ +   Q
Sbjct: 155 LNDREVLRLVLTNERLRDILLRQEHVQYEHKFDGQ 189


>SB_9344| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 341

 Score = 29.1 bits (62), Expect = 4.3
 Identities = 15/31 (48%), Positives = 19/31 (61%)
 Frame = +2

Query: 170 GNGTFLIKKLRKDPPTKVVVKKLNLIAGGTG 262
           G GT +++    DPP KVVVK LNL+    G
Sbjct: 161 GKGTLVVRPDSGDPP-KVVVKVLNLLGKAFG 190


>SB_1852| Best HMM Match : WD40 (HMM E-Value=1.7)
          Length = 513

 Score = 28.7 bits (61), Expect = 5.6
 Identities = 20/70 (28%), Positives = 32/70 (45%), Gaps = 4/70 (5%)
 Frame = +2

Query: 332 LFANQSEDDILLRDEL-ERYQREHPSQFQVWYT---IDRPTDGWKYSSGFINDEMIRDHL 499
           LF  +   D L+ D+     + E P  F V +T     RP      + GF+N  ++  HL
Sbjct: 439 LFLQEQTSDYLVLDQAGAEVKMEDP--FVVLFTSGSTGRPKPIMYTNHGFVNGAIVTQHL 496

Query: 500 FPPSNDVLVL 529
           +  S D ++L
Sbjct: 497 YHTSQDAIIL 506


>SB_42288| Best HMM Match : Transglut_N (HMM E-Value=9.2e-34)
          Length = 686

 Score = 28.3 bits (60), Expect = 7.5
 Identities = 13/61 (21%), Positives = 28/61 (45%)
 Frame = +2

Query: 320 ELKLLFANQSEDDILLRDELERYQREHPSQFQVWYTIDRPTDGWKYSSGFINDEMIRDHL 499
           ++ L+ A   +DD+ + DE  R +       ++W    R   G  ++ G   D ++ + L
Sbjct: 196 DVSLIHAKSLDDDVYMEDESHRQEYVMNETGRIWVGSSRNNYGRPWNFGQFEDVVLENAL 255

Query: 500 F 502
           +
Sbjct: 256 Y 256


>SB_42160| Best HMM Match : RVT_1 (HMM E-Value=0)
          Length = 1858

 Score = 28.3 bits (60), Expect = 7.5
 Identities = 11/23 (47%), Positives = 16/23 (69%)
 Frame = +1

Query: 613  LLKLLFTSGAYYQEYNQEFLIPI 681
            L  ++F SG + QE+N  F+IPI
Sbjct: 1313 LFNIIFRSGVFPQEWNLGFIIPI 1335


>SB_55307| Best HMM Match : HEAT (HMM E-Value=2.4e-11)
          Length = 1552

 Score = 28.3 bits (60), Expect = 7.5
 Identities = 17/68 (25%), Positives = 31/68 (45%)
 Frame = +2

Query: 344  QSEDDILLRDELERYQREHPSQFQVWYTIDRPTDGWKYSSGFINDEMIRDHLFPPSNDVL 523
            +S  D+  ++EL+R + EH  + +   +   PT    YS+    +    D + PP  D +
Sbjct: 1160 ESVHDLEWQEELDRPEEEHQGEDENSTSYRYPTPKIVYSAEESKENRKSDIIIPPGVDHI 1219

Query: 524  VLMCGPPP 547
             +   P P
Sbjct: 1220 AVQPQPRP 1227


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 24,610,652
Number of Sequences: 59808
Number of extensions: 518461
Number of successful extensions: 1278
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 1193
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1274
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2155861620
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)