Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P16_F_K02
         (786 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF016452-12|AAB66011.1|  309|Caenorhabditis elegans Hypothetical...   271   4e-73
AF016452-13|AAB66010.1|  303|Caenorhabditis elegans Hypothetical...   243   1e-64
AL032654-5|CAD91715.2|  516|Caenorhabditis elegans Hypothetical ...    32   0.53 
AL032654-4|CAA21721.2|  552|Caenorhabditis elegans Hypothetical ...    32   0.53 
Z70780-17|CAA94830.3|  264|Caenorhabditis elegans Hypothetical p...    29   5.0  
Z70754-11|CAA94780.3|  264|Caenorhabditis elegans Hypothetical p...    29   5.0  
U39648-4|AAK39290.1|  220|Caenorhabditis elegans Hypothetical pr...    29   5.0  
Z82069-7|CAB04907.2| 1792|Caenorhabditis elegans Hypothetical pr...    28   8.7  
Z35604-2|CAA84677.1|  809|Caenorhabditis elegans Hypothetical pr...    28   8.7  
U19744-1|AAA85704.1|  809|Caenorhabditis elegans integrin beta p...    28   8.7  
AL132902-15|CAC14425.1| 1792|Caenorhabditis elegans Hypothetical...    28   8.7  

>AF016452-12|AAB66011.1|  309|Caenorhabditis elegans Hypothetical
           protein T05H4.5 protein.
          Length = 309

 Score =  271 bits (664), Expect = 4e-73
 Identities = 121/205 (59%), Positives = 155/205 (75%)
 Frame = +2

Query: 2   VSSDEDKGYVDLVIKVYFKNVHPKFPEGGKLSQYLNNMKINDTIDVRGPSGRLQYTGNGT 181
           VSSDED G+VDL++KVYFKN + KFPEGGK+SQ+L ++KI DTI+ RGP G + Y G+G 
Sbjct: 105 VSSDEDLGFVDLMVKVYFKNTNEKFPEGGKMSQHLESLKIGDTINFRGPQGNIVYKGHGL 164

Query: 182 FLIKKLRKDPPTKVVVKKLNLIAGGTGIAPMLQLVRHICTDVNDRTELKLLFANQSEDDI 361
           F IK  +K  P   V K L++IAGGTGI PMLQ++  I  D  D T+++LLFANQ+EDDI
Sbjct: 165 FSIKADKKAEPKNRVFKHLSMIAGGTGITPMLQVIAAILRDPTDTTQIRLLFANQTEDDI 224

Query: 362 LLRDELERYQREHPSQFQVWYTIDRPTDGWKYSSGFINDEMIRDHLFPPSNDVLVLMCGP 541
           L R EL+   +EHP++F+VWYT+DRP   W YSSGFIND MI+++LFPP +D  VL+CGP
Sbjct: 225 LCRQELDDLAKEHPTRFRVWYTVDRPPVMWSYSSGFINDSMIKENLFPPGDDSAVLLCGP 284

Query: 542 PPMINFACNPALDKLGFKPDQRFAY 616
           PPMINFAC P L+KL + P  R  +
Sbjct: 285 PPMINFACIPNLEKLEYDPANRLLF 309


>AF016452-13|AAB66010.1|  303|Caenorhabditis elegans Hypothetical
           protein T05H4.4 protein.
          Length = 303

 Score =  243 bits (594), Expect = 1e-64
 Identities = 106/196 (54%), Positives = 144/196 (73%)
 Frame = +2

Query: 2   VSSDEDKGYVDLVIKVYFKNVHPKFPEGGKLSQYLNNMKINDTIDVRGPSGRLQYTGNGT 181
           VS D D GYVDL++KVYFKN H +FP+GGK+SQ+L ++KI DT+  RGP G + Y G+G 
Sbjct: 99  VSCDLDLGYVDLMVKVYFKNTHERFPDGGKMSQHLESLKIGDTVSFRGPHGSIIYKGSGL 158

Query: 182 FLIKKLRKDPPTKVVVKKLNLIAGGTGIAPMLQLVRHICTDVNDRTELKLLFANQSEDDI 361
           F ++  +K  P     K L++IAGGTGI PMLQ++  I  D  D T+++LLFANQ+EDDI
Sbjct: 159 FTVRMDKKAEPKNRFFKHLSMIAGGTGITPMLQVIAAILRDPIDATQIRLLFANQTEDDI 218

Query: 362 LLRDELERYQREHPSQFQVWYTIDRPTDGWKYSSGFINDEMIRDHLFPPSNDVLVLMCGP 541
           L R EL+    +HP++F+VWYT+ + +  W+YS+G IN+EMI++HLFP + +  VL+CGP
Sbjct: 219 LCRKELDELAEKHPTRFRVWYTVSKASKDWRYSTGHINEEMIKEHLFPSNEESAVLLCGP 278

Query: 542 PPMINFACNPALDKLG 589
           P MIN AC P LDKLG
Sbjct: 279 PAMINCACIPNLDKLG 294


>AL032654-5|CAD91715.2|  516|Caenorhabditis elegans Hypothetical
           protein Y52B11A.3b protein.
          Length = 516

 Score = 31.9 bits (69), Expect = 0.53
 Identities = 32/141 (22%), Positives = 62/141 (43%), Gaps = 16/141 (11%)
 Frame = +2

Query: 230 KKLNLIAGGTGIAPMLQLV-RHICTDVNDRTELKLLFANQSEDDI-------------LL 367
           ++L L+A G+GI PM+ ++ + I    N  +++  L  N++E+D+              +
Sbjct: 371 QELILLAAGSGITPMIDIMEKRIQKTENSNSKVYFLMFNKTENDLQTGKPEENPKSTWKM 430

Query: 368 RDELERYQ-REHPSQFQVWYTIDRPTDGWKYSSGFINDEMIRDHLFPPSN-DVLVLMCGP 541
            D   +Y+  E      V    + P +  +Y +G ++ +++   +   S       +CGP
Sbjct: 431 ADFYSKYRGDERIVMKNVLSASECPVETGEYFNGRVSTDLLNSIISTSSTASRRAFICGP 490

Query: 542 PPMINFACNPALDKLGFKPDQ 604
              I  A   AL+ L    DQ
Sbjct: 491 DGFI-LAAKTALESLNLHSDQ 510


>AL032654-4|CAA21721.2|  552|Caenorhabditis elegans Hypothetical
           protein Y52B11A.3a protein.
          Length = 552

 Score = 31.9 bits (69), Expect = 0.53
 Identities = 32/141 (22%), Positives = 62/141 (43%), Gaps = 16/141 (11%)
 Frame = +2

Query: 230 KKLNLIAGGTGIAPMLQLV-RHICTDVNDRTELKLLFANQSEDDI-------------LL 367
           ++L L+A G+GI PM+ ++ + I    N  +++  L  N++E+D+              +
Sbjct: 407 QELILLAAGSGITPMIDIMEKRIQKTENSNSKVYFLMFNKTENDLQTGKPEENPKSTWKM 466

Query: 368 RDELERYQ-REHPSQFQVWYTIDRPTDGWKYSSGFINDEMIRDHLFPPSN-DVLVLMCGP 541
            D   +Y+  E      V    + P +  +Y +G ++ +++   +   S       +CGP
Sbjct: 467 ADFYSKYRGDERIVMKNVLSASECPVETGEYFNGRVSTDLLNSIISTSSTASRRAFICGP 526

Query: 542 PPMINFACNPALDKLGFKPDQ 604
              I  A   AL+ L    DQ
Sbjct: 527 DGFI-LAAKTALESLNLHSDQ 546


>Z70780-17|CAA94830.3|  264|Caenorhabditis elegans Hypothetical
           protein F58E6.10 protein.
          Length = 264

 Score = 28.7 bits (61), Expect = 5.0
 Identities = 15/47 (31%), Positives = 24/47 (51%), Gaps = 1/47 (2%)
 Frame = +2

Query: 287 RHICTDVNDRT-ELKLLFANQSEDDILLRDELERYQREHPSQFQVWY 424
           RH  T   ++  EL   F      DI +R+EL R  + + ++ QVW+
Sbjct: 87  RHRTTFTQEQLQELDAAFQKSHYPDIYVREELARITKLNEARIQVWF 133


>Z70754-11|CAA94780.3|  264|Caenorhabditis elegans Hypothetical
           protein F58E6.10 protein.
          Length = 264

 Score = 28.7 bits (61), Expect = 5.0
 Identities = 15/47 (31%), Positives = 24/47 (51%), Gaps = 1/47 (2%)
 Frame = +2

Query: 287 RHICTDVNDRT-ELKLLFANQSEDDILLRDELERYQREHPSQFQVWY 424
           RH  T   ++  EL   F      DI +R+EL R  + + ++ QVW+
Sbjct: 87  RHRTTFTQEQLQELDAAFQKSHYPDIYVREELARITKLNEARIQVWF 133


>U39648-4|AAK39290.1|  220|Caenorhabditis elegans Hypothetical
           protein T13C5.4 protein.
          Length = 220

 Score = 28.7 bits (61), Expect = 5.0
 Identities = 12/44 (27%), Positives = 22/44 (50%)
 Frame = +2

Query: 293 ICTDVNDRTELKLLFANQSEDDILLRDELERYQREHPSQFQVWY 424
           I  D N   E++ +FA     D + R++L    + H  + Q+W+
Sbjct: 49  ITFDANQIDEMEKVFAENQYPDTMSREKLANKIQLHEERVQIWF 92


>Z82069-7|CAB04907.2| 1792|Caenorhabditis elegans Hypothetical protein
            W04A8.7 protein.
          Length = 1792

 Score = 27.9 bits (59), Expect = 8.7
 Identities = 18/62 (29%), Positives = 29/62 (46%)
 Frame = +1

Query: 205  RSAYKSCRQEIELDCRRYWHSSNASAGPTYMH*RQRPHRTEAAIREPKRR*HST*R*IRK 384
            R+   S R++  LD       +    G +Y+   Q+PH+ E A   PK+    T   +RK
Sbjct: 906  RAFLASQREKCLLDQTGIADPTGCGQGFSYVRVSQKPHKDENATPVPKKLVTGTNADLRK 965

Query: 385  IP 390
            +P
Sbjct: 966  LP 967


>Z35604-2|CAA84677.1|  809|Caenorhabditis elegans Hypothetical
           protein ZK1058.2 protein.
          Length = 809

 Score = 27.9 bits (59), Expect = 8.7
 Identities = 19/54 (35%), Positives = 30/54 (55%), Gaps = 2/54 (3%)
 Frame = +2

Query: 167 TGNGTFLIKKLRKD--PPTKVVVKKLNLIAGGTGIAPMLQLVRHICTDVNDRTE 322
           T N T  ++K  KD  PP  V+   L +IAG   +  +L L+  + T ++DR+E
Sbjct: 719 TDNATVWVRK-HKDCPPPVPVLAIVLGVIAGIVILGILLLLLWKLLTVLHDRSE 771


>U19744-1|AAA85704.1|  809|Caenorhabditis elegans integrin beta
           pat-3 protein.
          Length = 809

 Score = 27.9 bits (59), Expect = 8.7
 Identities = 19/54 (35%), Positives = 30/54 (55%), Gaps = 2/54 (3%)
 Frame = +2

Query: 167 TGNGTFLIKKLRKD--PPTKVVVKKLNLIAGGTGIAPMLQLVRHICTDVNDRTE 322
           T N T  ++K  KD  PP  V+   L +IAG   +  +L L+  + T ++DR+E
Sbjct: 719 TDNATVWVRK-HKDCPPPVPVLAIVLGVIAGIVILGILLLLLWKLLTVLHDRSE 771


>AL132902-15|CAC14425.1| 1792|Caenorhabditis elegans Hypothetical
            protein W04A8.7 protein.
          Length = 1792

 Score = 27.9 bits (59), Expect = 8.7
 Identities = 18/62 (29%), Positives = 29/62 (46%)
 Frame = +1

Query: 205  RSAYKSCRQEIELDCRRYWHSSNASAGPTYMH*RQRPHRTEAAIREPKRR*HST*R*IRK 384
            R+   S R++  LD       +    G +Y+   Q+PH+ E A   PK+    T   +RK
Sbjct: 906  RAFLASQREKCLLDQTGIADPTGCGQGFSYVRVSQKPHKDENATPVPKKLVTGTNADLRK 965

Query: 385  IP 390
            +P
Sbjct: 966  LP 967


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,308,552
Number of Sequences: 27780
Number of extensions: 400194
Number of successful extensions: 967
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 946
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 967
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1903721438
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)