Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P16_F_K01
         (733 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC3B8.11 |rrn6||RNA polymerase I transcription factor subunit ...    31   0.17 
SPAC4G9.07 |mug133||S. pombe specific UPF0300 family protein 2|S...    27   2.1  
SPAC869.02c |||nitric oxide dioxygenase |Schizosaccharomyces pom...    27   2.8  
SPAC26H5.06 |pot1||telomere end-binding protein Pot1 |Schizosacc...    26   4.8  
SPCC14G10.02 ||SPCC18B5.13|ribosome biogenesis protein Urb1|Schi...    26   6.4  
SPAC2F7.11 |nrd1|msa2|RNA-binding protein Nrd1|Schizosaccharomyc...    25   8.4  

>SPBC3B8.11 |rrn6||RNA polymerase I transcription factor subunit
           Rrn6 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 868

 Score = 31.1 bits (67), Expect = 0.17
 Identities = 13/24 (54%), Positives = 15/24 (62%)
 Frame = +3

Query: 615 FNQFSFIILYHILCKNYTKLSTIT 686
           F Q S   LYH+LC N  K +TIT
Sbjct: 584 FQQLSLSRLYHVLCSNRNKKNTIT 607


>SPAC4G9.07 |mug133||S. pombe specific UPF0300 family protein
           2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 513

 Score = 27.5 bits (58), Expect = 2.1
 Identities = 18/46 (39%), Positives = 25/46 (54%), Gaps = 3/46 (6%)
 Frame = +3

Query: 567 LKTVYYST--FIF-LCY*YFNQFSFIILYHILCKNYTKLSTITNIL 695
           +K   YST  FI+ +CY   N  + I+L    C+N T +ST   IL
Sbjct: 162 MKNNRYSTNPFIYGMCYIIRNNANRILLESCYCENSTGMSTCPRIL 207


>SPAC869.02c |||nitric oxide dioxygenase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 427

 Score = 27.1 bits (57), Expect = 2.8
 Identities = 10/24 (41%), Positives = 15/24 (62%)
 Frame = +1

Query: 649 YYVKTIQNYRPLLTYYNVDHQIKI 720
           +Y K + NY  +L Y+N  HQI +
Sbjct: 57  FYQKMLGNYPEVLPYFNKAHQISL 80


>SPAC26H5.06 |pot1||telomere end-binding protein Pot1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 555

 Score = 26.2 bits (55), Expect = 4.8
 Identities = 10/21 (47%), Positives = 14/21 (66%)
 Frame = +3

Query: 249 SVPVLNHIEPHRRCSFNQQFV 311
           S  +L+ I PH+RCSF  Q +
Sbjct: 200 SFSLLSQITPHQRCSFYAQVI 220


>SPCC14G10.02 ||SPCC18B5.13|ribosome biogenesis protein
            Urb1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1568

 Score = 25.8 bits (54), Expect = 6.4
 Identities = 13/38 (34%), Positives = 24/38 (63%)
 Frame = +1

Query: 553  LFLSI*KQFIIQHLYFFVTNILINFHLLYYTTYYVKTI 666
            LF+ I  ++ +Q  +  VT+I + + LLY +T Y K++
Sbjct: 1441 LFVGI-NRYYLQRQHVDVTDIPMYYELLYPSTDYTKSV 1477


>SPAC2F7.11 |nrd1|msa2|RNA-binding protein Nrd1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 529

 Score = 25.4 bits (53), Expect = 8.4
 Identities = 13/41 (31%), Positives = 22/41 (53%), Gaps = 1/41 (2%)
 Frame = -2

Query: 183 SIVSIVGGLRSLALAPTWSKRQLSFA-DQQGSGQNQHKYQS 64
           +I + +  ++ L L P WSKR++ +  D+   G  Q  Y S
Sbjct: 250 NIAAAIKAVQELPLNPKWSKRRIYYGRDRCAVGLKQPAYFS 290


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,738,644
Number of Sequences: 5004
Number of extensions: 52755
Number of successful extensions: 125
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 121
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 125
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 345237368
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)