Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P16_F_K01
         (733 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_14756| Best HMM Match : PIG-U (HMM E-Value=4.3)                     32   0.42 
SB_39464| Best HMM Match : 7tm_1 (HMM E-Value=4e-39)                   29   2.9  
SB_28637| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   5.1  

>SB_14756| Best HMM Match : PIG-U (HMM E-Value=4.3)
          Length = 194

 Score = 32.3 bits (70), Expect = 0.42
 Identities = 17/47 (36%), Positives = 26/47 (55%)
 Frame = +1

Query: 502 IGIITVSENYFRKFHTTLFLSI*KQFIIQHLYFFVTNILINFHLLYY 642
           +GIIT  + Y   F   ++ +I  ++ I  L FF++ I IN  LL Y
Sbjct: 63  VGIITGIKPYIAFFFIPVWSAIADKYRISRLLFFISTIAINLGLLSY 109


>SB_39464| Best HMM Match : 7tm_1 (HMM E-Value=4e-39)
          Length = 375

 Score = 29.5 bits (63), Expect = 2.9
 Identities = 14/28 (50%), Positives = 16/28 (57%)
 Frame = +1

Query: 613 ILINFHLLYYTTYYVKTIQNYRPLLTYY 696
           ILI + LLY  TY V  + N   LLT Y
Sbjct: 28  ILIGYSLLYLVTYIVAVLGNIMALLTCY 55


>SB_28637| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 195

 Score = 28.7 bits (61), Expect = 5.1
 Identities = 20/54 (37%), Positives = 26/54 (48%), Gaps = 5/54 (9%)
 Frame = -1

Query: 205 KRNL--QRSIHRFYSRWPPISCPGPNLE*TSAELRRPTRQRTEST---QVPKRD 59
           KRN+   ++  R +S+ PP + P PN    SA  R P  QR        VPK D
Sbjct: 112 KRNIFISQTYARRHSKIPPWTAPEPNPHVDSARARNPRGQRQSKIPPWTVPKPD 165


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,174,339
Number of Sequences: 59808
Number of extensions: 356127
Number of successful extensions: 675
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 608
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 673
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1962001171
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)