Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P16_F_J21
         (524 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC926.09c |fas1||fatty acid synthase beta subunit Fas1|Schizos...    27   1.7  
SPAC17C9.03 |tif471||translation initiation factor eIF4G |Schizo...    27   2.3  
SPCC1450.11c |cek1||serine/threonine protein kinase Cek1|Schizos...    26   3.0  
SPCC1672.10 |mis16||kinetochore protein Mis16 |Schizosaccharomyc...    26   4.0  
SPAP27G11.05c |vps41||vacuolar protein sorting-associated protei...    25   6.9  
SPBC1711.05 |||nucleocytoplasmic transport chaperone Srp40 |Schi...    25   9.1  

>SPAC926.09c |fas1||fatty acid synthase beta subunit
            Fas1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2073

 Score = 27.1 bits (57), Expect = 1.7
 Identities = 14/30 (46%), Positives = 19/30 (63%), Gaps = 1/30 (3%)
 Frame = +3

Query: 318  LFPGQGSQHVGMGKKLMHLPPV-RELYELA 404
            +F GQGSQ  GMG  L    PV R++++ A
Sbjct: 1684 VFTGQGSQEQGMGMDLYASSPVARKIWDSA 1713


>SPAC17C9.03 |tif471||translation initiation factor eIF4G
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1403

 Score = 26.6 bits (56), Expect = 2.3
 Identities = 12/33 (36%), Positives = 20/33 (60%)
 Frame = +3

Query: 213 ATEPELRWATQPYAVRPNEGDTNKARVEPSHTT 311
           ATEPE+   T+   ++ +EG +  +   PSH+T
Sbjct: 736 ATEPEVVDKTKVEKLKASEGKSTSSLSSPSHST 768


>SPCC1450.11c |cek1||serine/threonine protein kinase
            Cek1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1338

 Score = 26.2 bits (55), Expect = 3.0
 Identities = 11/25 (44%), Positives = 16/25 (64%)
 Frame = +2

Query: 263  QRGRYEQGTCGALAHYRSAVSRPGL 337
            Q+GR +     +L H R+A+S PGL
Sbjct: 1191 QKGRIDNLQAQSLTHKRNAISYPGL 1215


>SPCC1672.10 |mis16||kinetochore protein Mis16 |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 430

 Score = 25.8 bits (54), Expect = 4.0
 Identities = 9/25 (36%), Positives = 15/25 (60%)
 Frame = +3

Query: 261 PNEGDTNKARVEPSHTTVLLFPGQG 335
           P++GD N+AR  P    ++   G+G
Sbjct: 129 PHDGDVNRARYMPQKPEIIATMGEG 153


>SPAP27G11.05c |vps41||vacuolar protein sorting-associated protein
           Vps41|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 886

 Score = 25.0 bits (52), Expect = 6.9
 Identities = 13/56 (23%), Positives = 26/56 (46%)
 Frame = +3

Query: 249 YAVRPNEGDTNKARVEPSHTTVLLFPGQGSQHVGMGKKLMHLPPVRELYELASXIV 416
           + + PN+    + R +  H   L+     ++ +   KKL  +PP  ++ ELA   +
Sbjct: 343 FVISPNDIVYVRERNQIDHVKYLVSKEMYAEAIDAVKKLPEIPPSLQISELAKKYI 398


>SPBC1711.05 |||nucleocytoplasmic transport chaperone Srp40
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 451

 Score = 24.6 bits (51), Expect = 9.1
 Identities = 11/22 (50%), Positives = 14/22 (63%)
 Frame = +2

Query: 128 SCRTRSSRSEDTPFAKVAGRSQ 193
           S  T+SSR+  TPF +V   SQ
Sbjct: 369 STSTKSSRTTKTPFTRVGDPSQ 390


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,021,297
Number of Sequences: 5004
Number of extensions: 38343
Number of successful extensions: 103
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 100
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 103
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 214353836
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)