Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P16_F_J21
         (524 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

04_01_0084 - 912255-912368,912738-912822,914050-917105,920290-92...    31   0.57 
01_06_1684 + 39151412-39151702,39152410-39152548,39152926-391530...    31   0.57 
04_04_1580 - 34576595-34576723,34576905-34576981,34577058-345771...    30   0.99 
08_02_0100 + 12350498-12350538,12351216-12351717                       30   1.3  
12_01_0799 + 7329394-7330125                                           29   1.7  
09_04_0680 - 19401891-19402049,19402556-19402928,19403385-194034...    29   3.0  
07_03_1113 - 24068441-24068923                                         27   7.0  
05_03_0393 + 13435581-13435745,13435804-13436418,13437283-134373...    27   7.0  
03_03_0157 + 14947935-14948210,14948448-14948518,14948891-149490...    27   9.2  
02_05_0960 + 33097510-33097821,33098846-33099043,33099174-330994...    27   9.2  

>04_01_0084 -
           912255-912368,912738-912822,914050-917105,920290-920508
          Length = 1157

 Score = 31.1 bits (67), Expect = 0.57
 Identities = 18/51 (35%), Positives = 27/51 (52%), Gaps = 2/51 (3%)
 Frame = +3

Query: 240 TQPYAVRPNEGDTNKARVEPSHTTVLLFPGQGSQHVGM--GKKLMHLPPVR 386
           TQP+A R  +  ++    EPS +T +  P  GS HV +  G KL+    +R
Sbjct: 9   TQPHASRKQQSVSSDVHTEPSTSTSIQQPCLGSVHVNLFHGWKLLRAHALR 59


>01_06_1684 +
           39151412-39151702,39152410-39152548,39152926-39153040,
           39153232-39153332,39153688-39153809,39153885-39153976,
           39155288-39155393,39155477-39155631,39155904-39156031,
           39156349-39156479,39157171-39157268,39157371-39158162,
           39158472-39158523
          Length = 773

 Score = 31.1 bits (67), Expect = 0.57
 Identities = 16/68 (23%), Positives = 34/68 (50%)
 Frame = +3

Query: 183 DEASAFNEGAATEPELRWATQPYAVRPNEGDTNKARVEPSHTTVLLFPGQGSQHVGMGKK 362
           + ++A   G ++E +L   ++ Y + P+  D  K  ++P+    +  P   S  V +   
Sbjct: 642 EPSNACGNGKSSEDDLNECSREYRL-PHSNDGTKLSIDPNDLRTISLPEGQSPEVYLPGL 700

Query: 363 LMHLPPVR 386
           ++HL PV+
Sbjct: 701 VIHLVPVK 708


>04_04_1580 -
           34576595-34576723,34576905-34576981,34577058-34577104,
           34577864-34577964,34578114-34578203,34578647-34578763,
           34578835-34578992,34579562-34579843,34580367-34580667
          Length = 433

 Score = 30.3 bits (65), Expect = 0.99
 Identities = 17/47 (36%), Positives = 23/47 (48%)
 Frame = -3

Query: 294 PHVPCSYRPRWAAPHTAEWPNAAQVPLQHLH*KRWLRPATFANGVSS 154
           P  PCSY PR+        P +A +PLQH H +  +    F + V S
Sbjct: 68  PVAPCSYVPRYTMV-----PTSAMLPLQHHHRQLQISQENFQDRVPS 109


>08_02_0100 + 12350498-12350538,12351216-12351717
          Length = 180

 Score = 29.9 bits (64), Expect = 1.3
 Identities = 15/42 (35%), Positives = 22/42 (52%), Gaps = 4/42 (9%)
 Frame = -1

Query: 323 KQQNGSVRGLHTCLVRIALVGPHRIR----LSGPTQLRFRCS 210
           ++Q      L  CL+ +AL G HR++    LS P    F+CS
Sbjct: 84  RRQRSEEENLALCLLMLALGGHHRVQAPPPLSAPVGAEFKCS 125


>12_01_0799 + 7329394-7330125
          Length = 243

 Score = 29.5 bits (63), Expect = 1.7
 Identities = 15/40 (37%), Positives = 23/40 (57%)
 Frame = +3

Query: 201 NEGAATEPELRWATQPYAVRPNEGDTNKARVEPSHTTVLL 320
           N  +AT P L    QP A  P   DT+ +++  S+TT++L
Sbjct: 201 NMSSATSPSL----QPAAESPQSSDTSTSQIASSYTTLIL 236


>09_04_0680 -
           19401891-19402049,19402556-19402928,19403385-19403421,
           19403587-19403667,19405215-19405280,19407453-19407948,
           19408050-19408283,19408473-19408772,19409241-19409423,
           19410412-19410414
          Length = 643

 Score = 28.7 bits (61), Expect = 3.0
 Identities = 23/86 (26%), Positives = 38/86 (44%), Gaps = 1/86 (1%)
 Frame = -1

Query: 455 FRSLSANSSHIPSNNXRG*FVEFSYWGQMH*FLAHSNMLRAL-AWKQQNGSVRGLHTCLV 279
           +  +  NSS + + N  G  VE +Y      +      LRAL ++   N +   L   + 
Sbjct: 500 YAMVKTNSSPLLTINAFGCVVEAAYIAVYLVYAPRPARLRALTSFLLLNVAAFSLVVVVT 559

Query: 278 RIALVGPHRIRLSGPTQLRFRCSTFI 201
             A+  PHR+R+ G   L F  + F+
Sbjct: 560 VAAVAQPHRVRVLGSICLAFSMAVFV 585


>07_03_1113 - 24068441-24068923
          Length = 160

 Score = 27.5 bits (58), Expect = 7.0
 Identities = 19/56 (33%), Positives = 21/56 (37%)
 Frame = +2

Query: 107 RGLKVARSCRTRSSRSEDTPFAKVAGRSQRF**RCCNGT*AALGHSAVCGAAQRGR 274
           RG    R CR    RSE    A  AG+ QR     C G+       A   A   GR
Sbjct: 37  RGGGPQRRCRRMGPRSEPAAAAPAAGKKQRLWRWGCGGSPHGEESEAPAAAVHAGR 92


>05_03_0393 +
           13435581-13435745,13435804-13436418,13437283-13437349,
           13437605-13438239
          Length = 493

 Score = 27.5 bits (58), Expect = 7.0
 Identities = 16/46 (34%), Positives = 22/46 (47%)
 Frame = +2

Query: 257 AAQRGRYEQGTCGALAHYRSAVSRPGLATCWNGQETNASAPSKRTL 394
           AAQ  R     C A+AH  + +S     T W  Q T+ +  +K TL
Sbjct: 123 AAQTQRSAPTLCLAVAHTFAYLSMASAPTAWRQQATHGAKLAKWTL 168


>03_03_0157 +
           14947935-14948210,14948448-14948518,14948891-14949004,
           14949160-14949242,14949329-14949390,14949495-14949614,
           14950398-14950493,14950613-14950696
          Length = 301

 Score = 27.1 bits (57), Expect = 9.2
 Identities = 14/32 (43%), Positives = 18/32 (56%), Gaps = 1/32 (3%)
 Frame = +3

Query: 411 IVGWDVARVCTEGPEEELSRH-CQIATLVTSL 503
           I  WD   V   GPEEE + H C  +T++ SL
Sbjct: 192 IGSWDAIHVIQVGPEEEGAAHYCLNSTVMLSL 223


>02_05_0960 +
           33097510-33097821,33098846-33099043,33099174-33099446,
           33099575-33099677,33100297-33100415,33100968-33101759
          Length = 598

 Score = 27.1 bits (57), Expect = 9.2
 Identities = 12/43 (27%), Positives = 21/43 (48%)
 Frame = +1

Query: 163 SVCEGCWTKPALLMKVLQRNLSCVGPLSRMRCGPTRAIRTRHV 291
           SV +  WT+PAL +     + +C+GP  R     T  + +  +
Sbjct: 343 SVAQAAWTRPALQLS----SWTCIGPRRRTNTVSTSTVTSEEI 381


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,793,077
Number of Sequences: 37544
Number of extensions: 283286
Number of successful extensions: 913
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 887
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 911
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1154538620
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)