Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P16_F_J21
(524 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AF040642-2|AAN73874.2| 411|Caenorhabditis elegans Hypothetical ... 76 1e-14
Z81523-6|CAB04244.1| 2586|Caenorhabditis elegans Hypothetical pr... 28 3.6
U70857-8|AAB09173.2| 256|Caenorhabditis elegans C.elegans homeo... 28 3.6
U41263-13|AAC24428.2| 1844|Caenorhabditis elegans Hypothetical p... 28 3.6
Z81078-4|CAJ15165.1| 392|Caenorhabditis elegans Hypothetical pr... 27 6.2
Z75541-6|CAA99857.2| 644|Caenorhabditis elegans Hypothetical pr... 27 6.2
AF440800-1|AAL28139.1| 644|Caenorhabditis elegans transcription... 27 6.2
AC132211-4|AAN01432.2| 238|Caenorhabditis elegans Hypothetical ... 27 8.2
AC024789-1|AAK85500.1| 238|Caenorhabditis elegans Hypothetical ... 27 8.2
>AF040642-2|AAN73874.2| 411|Caenorhabditis elegans Hypothetical
protein C50D2.9 protein.
Length = 411
Score = 76.2 bits (179), Expect = 1e-14
Identities = 32/73 (43%), Positives = 55/73 (75%), Gaps = 2/73 (2%)
Frame = +3
Query: 312 VLLFPGQGSQHVGMGKKLMHLPPVRELYELASXIVGWDVARVCTEGPEEELSR--HCQIA 485
VLLFPGQG+Q VGMG+K+M +P R +++ AS ++G+D+ +VC +GP+++L + +CQ A
Sbjct: 95 VLLFPGQGAQFVGMGQKVMDIPAARRVFDEASEVLGYDMLKVCQDGPKQKLEQTLYCQPA 154
Query: 486 TLVTSLXSLERLR 524
+ +S+ + E L+
Sbjct: 155 IVTSSIAAFEALK 167
>Z81523-6|CAB04244.1| 2586|Caenorhabditis elegans Hypothetical
protein F32H2.5 protein.
Length = 2586
Score = 28.3 bits (60), Expect = 3.6
Identities = 19/78 (24%), Positives = 33/78 (42%), Gaps = 4/78 (5%)
Frame = +3
Query: 282 KARVEPSHTTVLLFPGQGSQHVGMGKKLMHLPPVRELYELASXIV---GWDV-ARVCTEG 449
K + + ++ G GSQ GM KLM +P + +S + G DV +C
Sbjct: 495 KVPITEARPIYFIYSGMGSQWPGMAIKLMKIPMFDDSLRASSKTLEEFGLDVYGMLCNPD 554
Query: 450 PEEELSRHCQIATLVTSL 503
PE+ + +T++
Sbjct: 555 PEQYSNNTMNCMLAITAI 572
>U70857-8|AAB09173.2| 256|Caenorhabditis elegans C.elegans homeobox
protein 34 protein.
Length = 256
Score = 28.3 bits (60), Expect = 3.6
Identities = 15/43 (34%), Positives = 21/43 (48%), Gaps = 2/43 (4%)
Frame = +2
Query: 293 GALAHYRSAVSRPGLATCWNGQETN--ASAPSKRTLRISLXHC 415
GA+ YR P T W+G+ETN + S+ LR + C
Sbjct: 114 GAVCKYRIRKKNPFPNTIWDGEETNYCFKSKSRNVLRDAYKKC 156
>U41263-13|AAC24428.2| 1844|Caenorhabditis elegans Hypothetical
protein T19D12.1 protein.
Length = 1844
Score = 28.3 bits (60), Expect = 3.6
Identities = 16/51 (31%), Positives = 25/51 (49%)
Frame = -2
Query: 460 SSSGPSVQTRATSHPTMXEANS*SSLTGGRCISFLPIPTCCEPWPGNSRTV 308
SS+G + + + + A++ +S T S PIPTC P+ G TV
Sbjct: 1622 SSTGGNSGSTTVNFQSSSVASTVASSTANIESSTTPIPTCASPYSGKIATV 1672
>Z81078-4|CAJ15165.1| 392|Caenorhabditis elegans Hypothetical
protein F36H2.5 protein.
Length = 392
Score = 27.5 bits (58), Expect = 6.2
Identities = 11/20 (55%), Positives = 13/20 (65%)
Frame = +1
Query: 259 GPTRAIRTRHVWSPRTLPFC 318
G T AI T VWSP++L C
Sbjct: 55 GDTSAICTNGVWSPKSLAMC 74
>Z75541-6|CAA99857.2| 644|Caenorhabditis elegans Hypothetical
protein F52B5.5a protein.
Length = 644
Score = 27.5 bits (58), Expect = 6.2
Identities = 15/43 (34%), Positives = 23/43 (53%)
Frame = +2
Query: 275 YEQGTCGALAHYRSAVSRPGLATCWNGQETNASAPSKRTLRIS 403
+ QGT +L + + PG++T +NG N KRT +IS
Sbjct: 48 FSQGTEDSLE--KDILKTPGISTIYNGILGNGEETKKRTPKIS 88
>AF440800-1|AAL28139.1| 644|Caenorhabditis elegans transcription
factor CEP-1 protein.
Length = 644
Score = 27.5 bits (58), Expect = 6.2
Identities = 15/43 (34%), Positives = 23/43 (53%)
Frame = +2
Query: 275 YEQGTCGALAHYRSAVSRPGLATCWNGQETNASAPSKRTLRIS 403
+ QGT +L + + PG++T +NG N KRT +IS
Sbjct: 48 FSQGTEDSLE--KDILKTPGISTIYNGILGNGEETKKRTPKIS 88
>AC132211-4|AAN01432.2| 238|Caenorhabditis elegans Hypothetical
protein Y108F1.1 protein.
Length = 238
Score = 27.1 bits (57), Expect = 8.2
Identities = 16/56 (28%), Positives = 23/56 (41%), Gaps = 2/56 (3%)
Frame = +3
Query: 360 KLMHLPPV--RELYELASXIVGWDVARVCTEGPEEELSRHCQIATLVTSLXSLERL 521
KL H P + L L G D+ VC E S C + T+ +L+R+
Sbjct: 124 KLDHAPQEYSQRLAVLTPSFTGADIMNVCNESAIRAASNKCHVVTIKDMEYALDRV 179
>AC024789-1|AAK85500.1| 238|Caenorhabditis elegans Hypothetical
protein Y47C4A.1 protein.
Length = 238
Score = 27.1 bits (57), Expect = 8.2
Identities = 16/56 (28%), Positives = 23/56 (41%), Gaps = 2/56 (3%)
Frame = +3
Query: 360 KLMHLPPV--RELYELASXIVGWDVARVCTEGPEEELSRHCQIATLVTSLXSLERL 521
KL H P + L L G D+ VC E S C + T+ +L+R+
Sbjct: 124 KLDHAPQEYSQRLAVLTPSFTGADIMNVCNESAIRAASNKCHVVTIKDMEYALDRV 179
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,547,837
Number of Sequences: 27780
Number of extensions: 232138
Number of successful extensions: 580
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 563
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 580
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1028310386
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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