Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P16_F_J19
         (673 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY295880-2|AAQ62694.1| 1558|Tribolium castaneum chitin synthase ...    22   4.0  
AY295880-1|AAQ62693.1| 1558|Tribolium castaneum chitin synthase ...    22   4.0  
AY291476-1|AAQ55060.1| 1558|Tribolium castaneum chitin synthase ...    22   4.0  
AY291475-1|AAQ55059.1| 1558|Tribolium castaneum chitin synthase ...    22   4.0  
AM292363-1|CAL23175.2|  347|Tribolium castaneum gustatory recept...    22   4.0  
AY043292-1|AAK96031.1|  323|Tribolium castaneum homeodomain tran...    22   5.3  

>AY295880-2|AAQ62694.1| 1558|Tribolium castaneum chitin synthase
           variant 2 protein.
          Length = 1558

 Score = 22.2 bits (45), Expect = 4.0
 Identities = 8/29 (27%), Positives = 16/29 (55%)
 Frame = -2

Query: 234 KNPTRPGFVHLLRLSYNILSHTIFLLILV 148
           K+  +P F H L + +    HT+ + +L+
Sbjct: 157 KSSKKPAFSHFLIVFFTETLHTVGIALLI 185


>AY295880-1|AAQ62693.1| 1558|Tribolium castaneum chitin synthase
           variant 1 protein.
          Length = 1558

 Score = 22.2 bits (45), Expect = 4.0
 Identities = 8/29 (27%), Positives = 16/29 (55%)
 Frame = -2

Query: 234 KNPTRPGFVHLLRLSYNILSHTIFLLILV 148
           K+  +P F H L + +    HT+ + +L+
Sbjct: 157 KSSKKPAFSHFLIVFFTETLHTVGIALLI 185


>AY291476-1|AAQ55060.1| 1558|Tribolium castaneum chitin synthase
           CHS1B protein.
          Length = 1558

 Score = 22.2 bits (45), Expect = 4.0
 Identities = 8/29 (27%), Positives = 16/29 (55%)
 Frame = -2

Query: 234 KNPTRPGFVHLLRLSYNILSHTIFLLILV 148
           K+  +P F H L + +    HT+ + +L+
Sbjct: 157 KSSKKPAFSHFLIVFFTETLHTVGIALLI 185


>AY291475-1|AAQ55059.1| 1558|Tribolium castaneum chitin synthase
           CHS1A protein.
          Length = 1558

 Score = 22.2 bits (45), Expect = 4.0
 Identities = 8/29 (27%), Positives = 16/29 (55%)
 Frame = -2

Query: 234 KNPTRPGFVHLLRLSYNILSHTIFLLILV 148
           K+  +P F H L + +    HT+ + +L+
Sbjct: 157 KSSKKPAFSHFLIVFFTETLHTVGIALLI 185


>AM292363-1|CAL23175.2|  347|Tribolium castaneum gustatory receptor
           candidate 42 protein.
          Length = 347

 Score = 22.2 bits (45), Expect = 4.0
 Identities = 9/14 (64%), Positives = 12/14 (85%)
 Frame = -2

Query: 654 NVHLLLAEQLLDRR 613
           N++LLL EQL +RR
Sbjct: 175 NINLLLTEQLQNRR 188


>AY043292-1|AAK96031.1|  323|Tribolium castaneum homeodomain
           transcription factor Prothoraxlessprotein.
          Length = 323

 Score = 21.8 bits (44), Expect = 5.3
 Identities = 11/27 (40%), Positives = 13/27 (48%)
 Frame = -1

Query: 466 EGGGGDDVTMTSFDQSTPLRFVLPPAH 386
           +GGG       S D S  LR  +PP H
Sbjct: 38  QGGGAVQPDPGSCDPSVGLRQGIPPHH 64


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 145,721
Number of Sequences: 336
Number of extensions: 3022
Number of successful extensions: 6
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 17489640
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)