Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P16_F_J19
         (673 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF014939-3|AAB63927.1|  831|Caenorhabditis elegans Hypothetical ...    29   4.0  
U21322-3|AAA62541.1| 1425|Caenorhabditis elegans Hypothetical pr...    28   6.9  
U50300-7|AAC48106.1|  645|Caenorhabditis elegans Hypothetical pr...    27   9.2  

>AF014939-3|AAB63927.1|  831|Caenorhabditis elegans Hypothetical
           protein ZC132.4 protein.
          Length = 831

 Score = 28.7 bits (61), Expect = 4.0
 Identities = 11/34 (32%), Positives = 21/34 (61%)
 Frame = +1

Query: 544 AIKDPKSKAEISTLLREGQRNIHPSVKKLLGKKE 645
           A KDP++++ +  L +E Q N+H ++  L   K+
Sbjct: 566 AQKDPRARSRLEKLQKERQFNVHQALNTLSANKD 599


>U21322-3|AAA62541.1| 1425|Caenorhabditis elegans Hypothetical protein
            K10D2.3 protein.
          Length = 1425

 Score = 27.9 bits (59), Expect = 6.9
 Identities = 12/22 (54%), Positives = 16/22 (72%), Gaps = 1/22 (4%)
 Frame = -2

Query: 402  SCLQLILKFAPYY-RFDFFNFL 340
            SC QL++ +  YY RFDF NF+
Sbjct: 1245 SCAQLLIGYFDYYSRFDFRNFV 1266


>U50300-7|AAC48106.1|  645|Caenorhabditis elegans Hypothetical
           protein R03H4.5 protein.
          Length = 645

 Score = 27.5 bits (58), Expect = 9.2
 Identities = 31/109 (28%), Positives = 43/109 (39%), Gaps = 11/109 (10%)
 Frame = -2

Query: 429 LINQHHFALSCLQLILKFAPYYRFDFFNFLFLSDTRRFLLDT--NRNFRVIRVVIFLVT- 259
           L+N H F L   +   +  P Y    F  L L     FL D     N R     +FL+T 
Sbjct: 53  LLNVHDFLLFYYKRFRRILPLYFLAIFLILILVHV--FLPDFLWQNNNRYSFASLFLITN 110

Query: 258 ---LH-----FNEIKSKNPTRPGFVHLLRLSYNILSHTIFLLILVTITF 136
              +H     FNE  S   +   F+HL  LS  +  + +   I + I F
Sbjct: 111 QLVIHDQSDYFNEFVSSVSSMNAFLHLWSLSVEMQFYLLVPFIFLGIQF 159


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,120,549
Number of Sequences: 27780
Number of extensions: 281947
Number of successful extensions: 752
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 742
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 752
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1518563232
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)