Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P16_F_J18
         (752 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC4G9.20c |||mitochondrial carrier with solute carrier repeats...    27   2.9  
SPBC23E6.07c |rfc1||DNA replication factor C complex subunit Rfc...    26   5.0  
SPBC13G1.10c |mug81||ATP-dependent RNA helicase Slh1|Schizosacch...    26   6.6  
SPCC16C4.09 |sts5|orb4|RNB-like protein|Schizosaccharomyces pomb...    25   8.8  

>SPAC4G9.20c |||mitochondrial carrier with solute carrier
           repeats|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 302

 Score = 27.1 bits (57), Expect = 2.9
 Identities = 11/27 (40%), Positives = 16/27 (59%)
 Frame = -1

Query: 647 NRIGVPLNFPDFQFSGALYGLSAGFYV 567
           +R G P+  P +  SGA+ GL+  F V
Sbjct: 104 SRDGTPVTMPQYYVSGAISGLANSFLV 130


>SPBC23E6.07c |rfc1||DNA replication factor C complex subunit
           Rfc1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 934

 Score = 26.2 bits (55), Expect = 5.0
 Identities = 14/32 (43%), Positives = 19/32 (59%)
 Frame = +1

Query: 196 STPRSKPLISPKRRPTKPSQSMNKTQKITTSK 291
           +T  SKP++   R   KP+Q   K +K TTSK
Sbjct: 138 TTSDSKPVVHQTRATRKPAQP--KAEKSTTSK 167


>SPBC13G1.10c |mug81||ATP-dependent RNA helicase
            Slh1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1935

 Score = 25.8 bits (54), Expect = 6.6
 Identities = 12/39 (30%), Positives = 21/39 (53%)
 Frame = +3

Query: 30   VYKNSKMRFLIVSALLACVAAAPSHLVPFPAVAYHAVAI 146
            ++ N+K++ LI ++ LA     P+HLV      Y+   I
Sbjct: 1441 LFVNNKVQILIATSTLAWGVNTPAHLVIVKGTEYYDAKI 1479


>SPCC16C4.09 |sts5|orb4|RNB-like protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 1066

 Score = 25.4 bits (53), Expect = 8.8
 Identities = 12/36 (33%), Positives = 18/36 (50%)
 Frame = +1

Query: 181 FKLQRSTPRSKPLISPKRRPTKPSQSMNKTQKITTS 288
           F  Q + P + P +S  + PT+  Q +  T   TTS
Sbjct: 94  FSNQATIPSNSPAVSNMQPPTQGGQPLYPTNFFTTS 129


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,683,561
Number of Sequences: 5004
Number of extensions: 49902
Number of successful extensions: 147
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 145
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 147
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 359287726
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)