Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P16_F_J18
(752 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_07_0083 + 40970890-40971015,40971886-40971994,40972679-409727... 30 1.7
01_01_0602 - 4484972-4485450,4485949-4485997,4486108-4486237,448... 30 1.7
04_03_0278 - 13761999-13762462,13762628-13762727,13763065-137632... 29 3.0
12_02_1118 + 26210322-26212559 29 4.0
05_05_0260 + 23660883-23662070 28 6.9
02_05_0356 + 28252154-28252897,28253171-28253377,28253473-282537... 28 6.9
01_06_0656 - 30926858-30927040,30927141-30927281,30927373-309274... 28 6.9
01_01_0994 - 7861310-7862119,7862378-7862498,7862718-7862901,786... 28 6.9
11_03_0132 - 10505910-10505996,10507419-10507499,10509582-105105... 28 9.2
05_01_0367 - 2874429-2874483,2876274-2876345,2876453-2879613,287... 28 9.2
02_05_0450 - 29117826-29118212,29118307-29118733,29119158-291192... 28 9.2
>01_07_0083 +
40970890-40971015,40971886-40971994,40972679-40972790,
40972944-40973100,40973609-40973761,40974143-40974292,
40974803-40974999,40975446-40975473
Length = 343
Score = 30.3 bits (65), Expect = 1.7
Identities = 19/51 (37%), Positives = 26/51 (50%), Gaps = 1/51 (1%)
Frame = -1
Query: 461 RCSSHGALS*LYGLTSHCTV*LRFSCFESVQGLPFLI-LNCPNTIDSLFLS 312
+CSS + +Y T HC+ CF +Q P+LI + CP D L LS
Sbjct: 84 KCSSPINVYAIYSYTIHCSTQAENICFWFIQNSPYLICVICPE--DHLHLS 132
>01_01_0602 -
4484972-4485450,4485949-4485997,4486108-4486237,
4486636-4486778,4486819-4486877,4487167-4487200,
4487489-4487629,4487719-4487907,4488027-4488122,
4488163-4488225,4488588-4489097
Length = 630
Score = 30.3 bits (65), Expect = 1.7
Identities = 16/37 (43%), Positives = 22/37 (59%), Gaps = 3/37 (8%)
Frame = +1
Query: 193 RSTPRSKPLISPKRRPT---KPSQSMNKTQKITTSKP 294
RS PRSK S K +P KPS+S + + K+ S+P
Sbjct: 560 RSQPRSKSTSSGKAKPVRSAKPSKSSSPSPKVAKSRP 596
>04_03_0278 -
13761999-13762462,13762628-13762727,13763065-13763289,
13763347-13763415,13763605-13764432,13764706-13764779,
13818821-13818905
Length = 614
Score = 29.5 bits (63), Expect = 3.0
Identities = 16/37 (43%), Positives = 21/37 (56%), Gaps = 1/37 (2%)
Frame = +1
Query: 175 ETFKLQRSTPRSKPLISPKRRPTKPSQ-SMNKTQKIT 282
ETF+L P S+P I PK P+ P +N Q+IT
Sbjct: 254 ETFELPILEPPSQPPIKPKSCPSSPQDVVLNNFQEIT 290
>12_02_1118 + 26210322-26212559
Length = 745
Score = 29.1 bits (62), Expect = 4.0
Identities = 12/40 (30%), Positives = 20/40 (50%)
Frame = -3
Query: 123 RLGMAPDGKVRLQRRPVRRKQSEISSCCSCKPRELLIIGR 4
++GM DG VR RP + K + + S + ++GR
Sbjct: 621 KVGMVKDGSVRFDERPAQSKAEVMEAINSLSMFSVFVVGR 660
>05_05_0260 + 23660883-23662070
Length = 395
Score = 28.3 bits (60), Expect = 6.9
Identities = 20/54 (37%), Positives = 28/54 (51%), Gaps = 3/54 (5%)
Frame = -1
Query: 701 ALNGRRLC---GLSRAFSFNGNRIGVPLNFPDFQFSGALYGLSAGFYVRDGLDF 549
+L GR L G SR++S N N+PD +F+ +Y L G R+GL F
Sbjct: 305 SLGGRMLFVARGCSRSYSKN--------NYPDAEFNEGVYFLDDGRLYREGLSF 350
>02_05_0356 +
28252154-28252897,28253171-28253377,28253473-28253710,
28254853-28255220
Length = 518
Score = 28.3 bits (60), Expect = 6.9
Identities = 13/36 (36%), Positives = 20/36 (55%)
Frame = -1
Query: 674 LSRAFSFNGNRIGVPLNFPDFQFSGALYGLSAGFYV 567
L + F+F R+G + P+ F+G L G S+ F V
Sbjct: 279 LDKIFAFLLRRLGFNIQIPEASFTGGLVGNSSPFAV 314
>01_06_0656 -
30926858-30927040,30927141-30927281,30927373-30927489,
30927696-30927784,30927870-30928010,30928084-30928171,
30928280-30928342,30928544-30928699,30928778-30928870,
30929095-30929176,30929426-30929493,30929575-30930633
Length = 759
Score = 28.3 bits (60), Expect = 6.9
Identities = 12/32 (37%), Positives = 18/32 (56%)
Frame = +3
Query: 45 KMRFLIVSALLACVAAAPSHLVPFPAVAYHAV 140
+ RF+ A+ + A+ HL P PA YHA+
Sbjct: 35 RRRFVAFLAISVALVASYHHLAPAPASRYHAL 66
>01_01_0994 -
7861310-7862119,7862378-7862498,7862718-7862901,
7862975-7863070,7863428-7863476,7863555-7863596,
7863684-7863836,7865631-7865705,7866462-7866587
Length = 551
Score = 28.3 bits (60), Expect = 6.9
Identities = 13/47 (27%), Positives = 23/47 (48%)
Frame = +2
Query: 11 MISSSRGLQEQQDEISDCFRLTGLRCSRTFPSGAIPSRGVPRCGHPS 151
++S ++ +D++SD T + S G +P G P GHP+
Sbjct: 481 ILSRKISRKKPEDKLSDIPEQTEAQASELVKEGPVPVEGKPIDGHPT 527
>11_03_0132 -
10505910-10505996,10507419-10507499,10509582-10510528,
10510645-10510742,10511273-10511442,10511551-10511832,
10514544-10514936
Length = 685
Score = 27.9 bits (59), Expect = 9.2
Identities = 18/40 (45%), Positives = 20/40 (50%), Gaps = 1/40 (2%)
Frame = -3
Query: 222 DQRL*PGRRSLQLEC-LQVIEWGQQLGWPQRGTPRLGMAP 106
D RL P RR+ L L E QLG G PRLG+ P
Sbjct: 42 DARLPPARRAADLVSRLTAAEKVAQLGDEAGGVPRLGVPP 81
>05_01_0367 - 2874429-2874483,2876274-2876345,2876453-2879613,
2879715-2879973,2880060-2880346,2880423-2880758,
2880862-2881003,2881077-2881297,2881379-2881540,
2881617-2881775,2881860-2882159,2882834-2883097,
2883133-2883243,2883902-2883988
Length = 1871
Score = 27.9 bits (59), Expect = 9.2
Identities = 20/76 (26%), Positives = 29/76 (38%)
Frame = +1
Query: 64 FPPYWPALQPHLPIWCHSQPWRTTLWPSQLLSPLYHLETFKLQRSTPRSKPLISPKRRPT 243
+ P PA P P + + P + PS S + + + S+P SP PT
Sbjct: 1780 YSPTSPAYSPTSPGYSPTSPSYSPSSPSYNPSSVKYTPSHAYSPSSPNYYSSTSPTYSPT 1839
Query: 244 KPSQSMNKTQKITTSK 291
PS S TS+
Sbjct: 1840 SPSYSQPSPSYSPTSR 1855
>02_05_0450 -
29117826-29118212,29118307-29118733,29119158-29119296,
29119426-29119530,29119624-29119705
Length = 379
Score = 27.9 bits (59), Expect = 9.2
Identities = 14/34 (41%), Positives = 20/34 (58%), Gaps = 1/34 (2%)
Frame = -3
Query: 135 RGTPRLGMAPDGK-VRLQRRPVRRKQSEISSCCS 37
RG+P+ + GK V +QRR + K +S CCS
Sbjct: 19 RGSPQTALEGGGKLVMMQRRDLVTKGVTLSVCCS 52
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,312,096
Number of Sequences: 37544
Number of extensions: 394429
Number of successful extensions: 1461
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 1395
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1460
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 2004270760
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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