Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P16_F_J18
(752 letters)
Database: bee
438 sequences; 146,343 total letters
Searching......................................................done
Score E
Sequences producing significant alignments: (bits) Value
AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul... 24 1.8
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A... 24 1.8
AY739659-1|AAU85298.1| 288|Apis mellifera hyperpolarization-act... 22 7.1
AY739658-1|AAU85297.1| 664|Apis mellifera hyperpolarization-act... 22 7.1
AY661557-1|AAT74557.1| 411|Apis mellifera yellow-f-like protein... 22 7.1
AY569719-1|AAS86672.1| 401|Apis mellifera feminizer protein. 22 7.1
AY569718-1|AAS86671.1| 401|Apis mellifera feminizer protein. 22 7.1
AY569715-1|AAS86668.1| 401|Apis mellifera feminizer protein. 22 7.1
AY569713-1|AAS86666.1| 401|Apis mellifera feminizer protein. 22 7.1
AY569711-1|AAS86664.1| 401|Apis mellifera feminizer protein. 22 7.1
AY569702-1|AAS86655.1| 400|Apis mellifera feminizer protein. 22 7.1
AY350616-1|AAQ57658.1| 401|Apis mellifera complementary sex det... 22 7.1
AY280848-1|AAQ16312.1| 632|Apis mellifera hyperpolarization-act... 22 7.1
AJ547798-1|CAD67999.1| 587|Apis mellifera octopamine receptor p... 22 7.1
AY569714-1|AAS86667.1| 401|Apis mellifera feminizer protein. 21 9.4
>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
AbsCAM-Ig7B protein.
Length = 1923
Score = 23.8 bits (49), Expect = 1.8
Identities = 12/41 (29%), Positives = 19/41 (46%)
Frame = +3
Query: 501 IASPAIKSIATQPPVEEVKTVADVEASAKAVEGPAELEVGK 623
++SP I+ PP+E + + V+G EL GK
Sbjct: 1224 VSSPQALFISWLPPLEPNGIITKYNLYTRVVDGREELNHGK 1264
Score = 22.2 bits (45), Expect = 5.4
Identities = 7/11 (63%), Positives = 7/11 (63%)
Frame = +2
Query: 143 HPSCCPHSITW 175
HP PH ITW
Sbjct: 357 HPQAGPHFITW 367
>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
AbsCAM-Ig7A protein.
Length = 1919
Score = 23.8 bits (49), Expect = 1.8
Identities = 12/41 (29%), Positives = 19/41 (46%)
Frame = +3
Query: 501 IASPAIKSIATQPPVEEVKTVADVEASAKAVEGPAELEVGK 623
++SP I+ PP+E + + V+G EL GK
Sbjct: 1220 VSSPQALFISWLPPLEPNGIITKYNLYTRVVDGREELNHGK 1260
Score = 22.2 bits (45), Expect = 5.4
Identities = 7/11 (63%), Positives = 7/11 (63%)
Frame = +2
Query: 143 HPSCCPHSITW 175
HP PH ITW
Sbjct: 357 HPQAGPHFITW 367
>AY739659-1|AAU85298.1| 288|Apis mellifera
hyperpolarization-activated ion channelvariant T
protein.
Length = 288
Score = 21.8 bits (44), Expect = 7.1
Identities = 8/41 (19%), Positives = 21/41 (51%)
Frame = +1
Query: 346 LRIRNGKPWTLSKQLKRN*TVQWLVRPYS*LRAPWELHLTL 468
+++ K + +++++ W++ P S R W+L + L
Sbjct: 57 MKLFGSKKALMKERIRQKAAGHWVIHPCSSFRFYWDLCMLL 97
>AY739658-1|AAU85297.1| 664|Apis mellifera
hyperpolarization-activated ion channelvariant L
protein.
Length = 664
Score = 21.8 bits (44), Expect = 7.1
Identities = 8/41 (19%), Positives = 21/41 (51%)
Frame = +1
Query: 346 LRIRNGKPWTLSKQLKRN*TVQWLVRPYS*LRAPWELHLTL 468
+++ K + +++++ W++ P S R W+L + L
Sbjct: 57 MKLFGSKKALMKERIRQKAAGHWVIHPCSSFRFYWDLCMLL 97
>AY661557-1|AAT74557.1| 411|Apis mellifera yellow-f-like protein
protein.
Length = 411
Score = 21.8 bits (44), Expect = 7.1
Identities = 10/29 (34%), Positives = 14/29 (48%)
Frame = -1
Query: 629 LNFPDFQFSGALYGLSAGFYVRDGLDFFY 543
+N +FQ+ L+GLS DG Y
Sbjct: 228 INGFNFQWKDGLFGLSLSALQTDGYKILY 256
>AY569719-1|AAS86672.1| 401|Apis mellifera feminizer protein.
Length = 401
Score = 21.8 bits (44), Expect = 7.1
Identities = 9/17 (52%), Positives = 12/17 (70%)
Frame = +1
Query: 349 RIRNGKPWTLSKQLKRN 399
R+ GKP T S +LKR+
Sbjct: 134 RVLPGKPTTTSDELKRD 150
>AY569718-1|AAS86671.1| 401|Apis mellifera feminizer protein.
Length = 401
Score = 21.8 bits (44), Expect = 7.1
Identities = 9/17 (52%), Positives = 12/17 (70%)
Frame = +1
Query: 349 RIRNGKPWTLSKQLKRN 399
R+ GKP T S +LKR+
Sbjct: 134 RVLPGKPTTTSDELKRD 150
>AY569715-1|AAS86668.1| 401|Apis mellifera feminizer protein.
Length = 401
Score = 21.8 bits (44), Expect = 7.1
Identities = 9/17 (52%), Positives = 12/17 (70%)
Frame = +1
Query: 349 RIRNGKPWTLSKQLKRN 399
R+ GKP T S +LKR+
Sbjct: 134 RVLPGKPTTTSDELKRD 150
>AY569713-1|AAS86666.1| 401|Apis mellifera feminizer protein.
Length = 401
Score = 21.8 bits (44), Expect = 7.1
Identities = 9/17 (52%), Positives = 12/17 (70%)
Frame = +1
Query: 349 RIRNGKPWTLSKQLKRN 399
R+ GKP T S +LKR+
Sbjct: 134 RVLPGKPTTTSDELKRD 150
>AY569711-1|AAS86664.1| 401|Apis mellifera feminizer protein.
Length = 401
Score = 21.8 bits (44), Expect = 7.1
Identities = 9/17 (52%), Positives = 12/17 (70%)
Frame = +1
Query: 349 RIRNGKPWTLSKQLKRN 399
R+ GKP T S +LKR+
Sbjct: 134 RVLPGKPTTTSDELKRD 150
>AY569702-1|AAS86655.1| 400|Apis mellifera feminizer protein.
Length = 400
Score = 21.8 bits (44), Expect = 7.1
Identities = 9/17 (52%), Positives = 12/17 (70%)
Frame = +1
Query: 349 RIRNGKPWTLSKQLKRN 399
R+ GKP T S +LKR+
Sbjct: 134 RVLPGKPTTTSDELKRD 150
>AY350616-1|AAQ57658.1| 401|Apis mellifera complementary sex
determiner protein.
Length = 401
Score = 21.8 bits (44), Expect = 7.1
Identities = 9/17 (52%), Positives = 12/17 (70%)
Frame = +1
Query: 349 RIRNGKPWTLSKQLKRN 399
R+ GKP T S +LKR+
Sbjct: 134 RVLPGKPTTTSDELKRD 150
>AY280848-1|AAQ16312.1| 632|Apis mellifera
hyperpolarization-activated ion channel protein.
Length = 632
Score = 21.8 bits (44), Expect = 7.1
Identities = 8/41 (19%), Positives = 21/41 (51%)
Frame = +1
Query: 346 LRIRNGKPWTLSKQLKRN*TVQWLVRPYS*LRAPWELHLTL 468
+++ K + +++++ W++ P S R W+L + L
Sbjct: 57 MKLFGSKKALMKERIRQKAAGHWVIHPCSSFRFYWDLCMLL 97
>AJ547798-1|CAD67999.1| 587|Apis mellifera octopamine receptor
protein.
Length = 587
Score = 21.8 bits (44), Expect = 7.1
Identities = 8/17 (47%), Positives = 11/17 (64%)
Frame = +2
Query: 284 RQSRCEH*SSSGTGCRW 334
R+SRC S+ +G RW
Sbjct: 15 RESRCSVRCSAASGLRW 31
>AY569714-1|AAS86667.1| 401|Apis mellifera feminizer protein.
Length = 401
Score = 21.4 bits (43), Expect = 9.4
Identities = 9/16 (56%), Positives = 11/16 (68%)
Frame = +1
Query: 349 RIRNGKPWTLSKQLKR 396
R+ GKP T S +LKR
Sbjct: 134 RVLPGKPTTTSDELKR 149
Database: bee
Posted date: Oct 23, 2007 1:17 PM
Number of letters in database: 146,343
Number of sequences in database: 438
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 180,610
Number of Sequences: 438
Number of extensions: 3624
Number of successful extensions: 21
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 19
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 21
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 23632110
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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