Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P16_F_J17
         (781 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBP35G2.09 |usp103|yhc1|U1 snRNP-associated protein Usp103 |Sch...    44   2e-05
SPAC29B12.10c |||OPT oligopeptide transporter family|Schizosacch...    27   2.3  
SPAC823.12 |||zinc finger protein Pep5/Vps11 |Schizosaccharomyce...    27   4.0  
SPBC1198.06c |||mannan endo-1,6-alpha-mannosidase |Schizosacchar...    25   9.2  
SPAC328.06 |ubp2||ubiquitin C-terminal hydrolase Ubp2|Schizosacc...    25   9.2  
SPAC1486.05 |nup189||nucleoporin Nup189|Schizosaccharomyces pomb...    25   9.2  

>SPBP35G2.09 |usp103|yhc1|U1 snRNP-associated protein Usp103
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 182

 Score = 44.4 bits (100), Expect = 2e-05
 Identities = 23/51 (45%), Positives = 31/51 (60%), Gaps = 2/51 (3%)
 Frame = +3

Query: 81  YLTHDSPSVRKTHCTGRKHKDNVKFXYQKWMEEQAQHLID--ATTAAFKAG 227
           +LTHDS SVRK H  GR H  NV+  Y K  +E+AQ  ++  A++   K G
Sbjct: 12  WLTHDSQSVRKAHNAGRAHIQNVQDYYTKVAQEEAQKQLEERASSGFLKKG 62



 Score = 25.8 bits (54), Expect = 7.0
 Identities = 9/15 (60%), Positives = 12/15 (80%), Gaps = 1/15 (6%)
 Frame = +2

Query: 47 MPKYYCDYCR-YLPH 88
          MP+Y CDYC+ +L H
Sbjct: 1  MPRYLCDYCQVWLTH 15


>SPAC29B12.10c |||OPT oligopeptide transporter
           family|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 851

 Score = 27.5 bits (58), Expect = 2.3
 Identities = 8/23 (34%), Positives = 15/23 (65%)
 Frame = -3

Query: 296 HYRRIPRWWYCSAFVAKWILSNF 228
           +Y+  P+WWY + F+  + L+ F
Sbjct: 527 NYKEAPQWWYATLFIVVFGLTIF 549


>SPAC823.12 |||zinc finger protein Pep5/Vps11 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 906

 Score = 26.6 bits (56), Expect = 4.0
 Identities = 15/46 (32%), Positives = 25/46 (54%), Gaps = 2/46 (4%)
 Frame = +3

Query: 63  VIIVDTYLT-HDSPSVRKTHCTGRKHKDNV-KFXYQKWMEEQAQHL 194
           ++++  Y+  HDSPS+RK    G    D   K  Y   + ++A+HL
Sbjct: 457 LLLLSCYVEIHDSPSIRKLIDIGEIDFDQAFKICYDSNLLDEAKHL 502


>SPBC1198.06c |||mannan endo-1,6-alpha-mannosidase
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 466

 Score = 25.4 bits (53), Expect = 9.2
 Identities = 11/31 (35%), Positives = 15/31 (48%)
 Frame = +2

Query: 365 SWRSYGTTNDDGSTWANAANDGNETAYDGPH 457
           S+  +   NDD   WA AA D  E  +  P+
Sbjct: 101 SFEYFNLGNDDQGMWAAAAMDAAEANFSPPN 131


>SPAC328.06 |ubp2||ubiquitin C-terminal hydrolase
           Ubp2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1141

 Score = 25.4 bits (53), Expect = 9.2
 Identities = 12/29 (41%), Positives = 16/29 (55%), Gaps = 1/29 (3%)
 Frame = +2

Query: 308 TPTSCTRWSSRYDTSSIYGSWR-SYGTTN 391
           T ++C +WSS+   S I   WR SY   N
Sbjct: 121 TTSTCMKWSSKTTKSEIEVEWRDSYLDAN 149


>SPAC1486.05 |nup189||nucleoporin Nup189|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1778

 Score = 25.4 bits (53), Expect = 9.2
 Identities = 16/55 (29%), Positives = 27/55 (49%)
 Frame = +2

Query: 161 SEMDGGTSTTSHRCNNSGIQSRQNCSKSIWQQRHCNTTTLGSFGNGTRRTPTSCT 325
           ++ +  TS T      S   +  N   S++ +   +TTT G FGN T + P++ T
Sbjct: 544 TQTNNATSNTGTGLFGSNNANTTNTGGSLFNKP--STTTGGLFGNTTAQQPSTTT 596


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,734,710
Number of Sequences: 5004
Number of extensions: 51286
Number of successful extensions: 127
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 125
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 127
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 377352472
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)