Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P16_F_J17
(781 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
02_02_0369 - 9505330-9505652,9507262-9507532,9507649-9507690,950... 62 4e-10
06_01_0187 + 1458802-1458895,1459004-1459464,1459551-1459648,146... 31 1.4
04_04_0198 + 23502657-23502900,23505228-23505298,23505690-235057... 31 1.4
09_06_0194 - 21469815-21470117,21470226-21470376,21470463-214707... 30 2.4
06_01_0173 - 1364219-1364836,1364941-1365123,1365215-1365470,136... 29 3.1
07_03_1605 - 28093235-28094031,28094887-28094974 29 4.1
03_03_0262 + 15968884-15969687 29 4.1
12_02_0522 - 19960092-19960595,19962737-19962880,19963042-199631... 29 5.5
10_05_0043 + 8503979-8504407,8506484-8506624,8506865-8506975,850... 28 7.2
03_05_0361 - 23448459-23448910,23448990-23449406,23449542-234497... 28 7.2
>02_02_0369 -
9505330-9505652,9507262-9507532,9507649-9507690,
9508416-9508458,9508853-9508860
Length = 228
Score = 62.5 bits (145), Expect = 4e-10
Identities = 28/42 (66%), Positives = 32/42 (76%)
Frame = +3
Query: 75 DTYLTHDSPSVRKTHCTGRKHKDNVKFXYQKWMEEQAQHLID 200
DTYLTHDSPSVRK H G KHK NV+ YQ++ E+Q Q LID
Sbjct: 10 DTYLTHDSPSVRKQHNAGYKHKANVRTYYQQFEEQQTQSLID 51
Score = 30.3 bits (65), Expect = 1.8
Identities = 11/15 (73%), Positives = 12/15 (80%), Gaps = 1/15 (6%)
Frame = +2
Query: 47 MPKYYCDYC-RYLPH 88
MP+YYCDYC YL H
Sbjct: 1 MPRYYCDYCDTYLTH 15
>06_01_0187 +
1458802-1458895,1459004-1459464,1459551-1459648,
1460918-1461487,1461534-1461822,1461904-1462086,
1462204-1462824
Length = 771
Score = 30.7 bits (66), Expect = 1.4
Identities = 8/24 (33%), Positives = 15/24 (62%)
Frame = -3
Query: 293 YRRIPRWWYCSAFVAKWILSNFAC 222
Y+++P WW+ S +A ++ F C
Sbjct: 444 YKQVPEWWFISILIASVAITMFTC 467
>04_04_0198 +
23502657-23502900,23505228-23505298,23505690-23505727,
23505905-23507693
Length = 713
Score = 30.7 bits (66), Expect = 1.4
Identities = 14/31 (45%), Positives = 16/31 (51%)
Frame = +3
Query: 195 IDATTAAFKAGKIAQNPFGNKGTAIPPPWDP 287
+DAT A G IA P G +G PPP P
Sbjct: 524 VDATVVAAAGGGIAIGPLGEEGLVGPPPPPP 554
>09_06_0194 -
21469815-21470117,21470226-21470376,21470463-21470700,
21470784-21470991,21471107-21471309,21471407-21471508,
21471622-21472945
Length = 842
Score = 29.9 bits (64), Expect = 2.4
Identities = 15/60 (25%), Positives = 20/60 (33%), Gaps = 1/60 (1%)
Frame = +2
Query: 212 GIQSRQNCSKSIWQQRHCNTTTLGSFGNGTRRTPTSCTRWSSR-YDTSSIYGSWRSYGTT 388
G + C+ + + C TRR PT C W D + SW G T
Sbjct: 374 GNMNAGECAAACRRNCSCVAYAYADLSRSTRRDPTRCLMWGGELLDMEKVNESWGDLGET 433
>06_01_0173 -
1364219-1364836,1364941-1365123,1365215-1365470,
1365551-1366120,1367066-1367178,1367344-1367816,
1367906-1367984
Length = 763
Score = 29.5 bits (63), Expect = 3.1
Identities = 8/24 (33%), Positives = 15/24 (62%)
Frame = -3
Query: 293 YRRIPRWWYCSAFVAKWILSNFAC 222
Y+++P WW+ +A ++ FAC
Sbjct: 437 YKQVPEWWFVCILIANIAVTIFAC 460
>07_03_1605 - 28093235-28094031,28094887-28094974
Length = 294
Score = 29.1 bits (62), Expect = 4.1
Identities = 21/59 (35%), Positives = 30/59 (50%), Gaps = 4/59 (6%)
Frame = +2
Query: 290 GNGTRRT---PTSCTR-WSSRYDTSSIYGSWRSYGTTNDDGSTWANAANDGNETAYDGP 454
GNGTR T P+SCT+ WS + +++ G GTT S + N +E+ D P
Sbjct: 87 GNGTRHTVFGPSSCTQSWSHQAAAAAMGGK----GTTGSRSSISLCSDNYDSESEVDDP 141
>03_03_0262 + 15968884-15969687
Length = 267
Score = 29.1 bits (62), Expect = 4.1
Identities = 12/23 (52%), Positives = 13/23 (56%)
Frame = -3
Query: 254 VAKWILSNFACFECRCCCIDEML 186
V W+ SN C CRC IDE L
Sbjct: 119 VDMWLRSNSTCPLCRCAVIDEAL 141
>12_02_0522 -
19960092-19960595,19962737-19962880,19963042-19963131,
19963215-19963320,19963400-19963574,19963849-19963951,
19964382-19964636,19964726-19964803,19964908-19965000,
19965091-19965222,19965898-19966002,19966127-19966201,
19966284-19966340,19966419-19966532,19966613-19966756,
19966886-19966969,19967071-19967164,19967244-19967369,
19967507-19967580,19967672-19967875,19968234-19968388,
19968860-19968947,19969505-19969730,19970235-19970286,
19970766-19970958,19973221-19973314,19973744-19973788,
19974874-19974896
Length = 1210
Score = 28.7 bits (61), Expect = 5.5
Identities = 16/53 (30%), Positives = 23/53 (43%)
Frame = +2
Query: 170 DGGTSTTSHRCNNSGIQSRQNCSKSIWQQRHCNTTTLGSFGNGTRRTPTSCTR 328
+ G HR + I+ S S W +RHCN T L ++ G C+R
Sbjct: 175 EAGALVPIHRLKSLRIRRSTPPSSSSWWRRHCNRTPL-TWPLGVYIVSVQCSR 226
>10_05_0043 +
8503979-8504407,8506484-8506624,8506865-8506975,
8507746-8508330
Length = 421
Score = 28.3 bits (60), Expect = 7.2
Identities = 10/20 (50%), Positives = 15/20 (75%)
Frame = +3
Query: 93 DSPSVRKTHCTGRKHKDNVK 152
D+P V + H TG+KHK N++
Sbjct: 288 DTPEVLRIHKTGKKHKKNLE 307
>03_05_0361 -
23448459-23448910,23448990-23449406,23449542-23449735,
23449854-23449902,23450155-23450539,23450578-23450874,
23451650-23451961
Length = 701
Score = 28.3 bits (60), Expect = 7.2
Identities = 16/60 (26%), Positives = 28/60 (46%), Gaps = 6/60 (10%)
Frame = +2
Query: 281 GSFGNGTRRTPTSCTRWSSRYDTSSIYGS------WRSYGTTNDDGSTWANAANDGNETA 442
G G G P +C+ +R+ S++ S W + T DGS+W++ +G T+
Sbjct: 310 GQQGYGGGVPPPTCSGGHTRFGASALLISNACSLNWYLWNHTMSDGSSWSSDGTEGQYTS 369
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,288,669
Number of Sequences: 37544
Number of extensions: 322442
Number of successful extensions: 967
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 940
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 967
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2091906552
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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