Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P16_F_J17
(781 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
X12517-1|CAA31037.1| 159|Homo sapiens protein ( Human mRNA for ... 111 4e-24
BC121083-1|AAI21084.1| 159|Homo sapiens small nuclear ribonucle... 111 4e-24
BC121082-1|AAI21083.1| 159|Homo sapiens small nuclear ribonucle... 111 4e-24
AL139100-3|CAI20351.1| 180|Homo sapiens small nuclear ribonucle... 111 4e-24
AL139100-2|CAI20350.1| 159|Homo sapiens small nuclear ribonucle... 111 4e-24
AK223098-1|BAD96818.1| 159|Homo sapiens small nuclear ribonucle... 107 4e-23
M18465-1|AAA36618.1| 106|Homo sapiens protein ( Human U1 small ... 71 4e-12
AL139100-4|CAI20352.1| 118|Homo sapiens small nuclear ribonucle... 46 2e-04
BC086873-1|AAH86873.1| 267|Homo sapiens SLC16A12 protein protein. 30 8.1
AL353146-5|CAI12383.2| 486|Homo sapiens solute carrier family 1... 30 8.1
AL353146-4|CAI12382.1| 138|Homo sapiens solute carrier family 1... 30 8.1
AK127303-1|BAC86925.1| 486|Homo sapiens protein ( Homo sapiens ... 30 8.1
AK124901-1|BAC85987.1| 354|Homo sapiens protein ( Homo sapiens ... 30 8.1
>X12517-1|CAA31037.1| 159|Homo sapiens protein ( Human mRNA for U1
small nuclear RNP-specific C protein. ).
Length = 159
Score = 111 bits (266), Expect = 4e-24
Identities = 52/71 (73%), Positives = 55/71 (77%), Gaps = 3/71 (4%)
Frame = +3
Query: 75 DTYLTHDSPSVRKTHCTGRKHKDNVKFXYQKWMEEQAQHLIDATTAAFKAGKIAQNPFG- 251
DTYLTHDSPSVRKTHC+GRKHK+NVK YQKWMEEQAQ LID TTAAF+ GKI PF
Sbjct: 10 DTYLTHDSPSVRKTHCSGRKHKENVKDYYQKWMEEQAQSLIDKTTAAFQQGKIPPTPFSA 69
Query: 252 --NKGTAIPPP 278
G IPPP
Sbjct: 70 PPPAGAMIPPP 80
>BC121083-1|AAI21084.1| 159|Homo sapiens small nuclear
ribonucleoprotein polypeptide C protein.
Length = 159
Score = 111 bits (266), Expect = 4e-24
Identities = 52/71 (73%), Positives = 55/71 (77%), Gaps = 3/71 (4%)
Frame = +3
Query: 75 DTYLTHDSPSVRKTHCTGRKHKDNVKFXYQKWMEEQAQHLIDATTAAFKAGKIAQNPFG- 251
DTYLTHDSPSVRKTHC+GRKHK+NVK YQKWMEEQAQ LID TTAAF+ GKI PF
Sbjct: 10 DTYLTHDSPSVRKTHCSGRKHKENVKDYYQKWMEEQAQSLIDKTTAAFQQGKIPPTPFSA 69
Query: 252 --NKGTAIPPP 278
G IPPP
Sbjct: 70 PPPAGAMIPPP 80
>BC121082-1|AAI21083.1| 159|Homo sapiens small nuclear
ribonucleoprotein polypeptide C protein.
Length = 159
Score = 111 bits (266), Expect = 4e-24
Identities = 52/71 (73%), Positives = 55/71 (77%), Gaps = 3/71 (4%)
Frame = +3
Query: 75 DTYLTHDSPSVRKTHCTGRKHKDNVKFXYQKWMEEQAQHLIDATTAAFKAGKIAQNPFG- 251
DTYLTHDSPSVRKTHC+GRKHK+NVK YQKWMEEQAQ LID TTAAF+ GKI PF
Sbjct: 10 DTYLTHDSPSVRKTHCSGRKHKENVKDYYQKWMEEQAQSLIDKTTAAFQQGKIPPTPFSA 69
Query: 252 --NKGTAIPPP 278
G IPPP
Sbjct: 70 PPPAGAMIPPP 80
>AL139100-3|CAI20351.1| 180|Homo sapiens small nuclear
ribonucleoprotein polypeptide C protein.
Length = 180
Score = 111 bits (266), Expect = 4e-24
Identities = 52/71 (73%), Positives = 55/71 (77%), Gaps = 3/71 (4%)
Frame = +3
Query: 75 DTYLTHDSPSVRKTHCTGRKHKDNVKFXYQKWMEEQAQHLIDATTAAFKAGKIAQNPFG- 251
DTYLTHDSPSVRKTHC+GRKHK+NVK YQKWMEEQAQ LID TTAAF+ GKI PF
Sbjct: 31 DTYLTHDSPSVRKTHCSGRKHKENVKDYYQKWMEEQAQSLIDKTTAAFQQGKIPPTPFSA 90
Query: 252 --NKGTAIPPP 278
G IPPP
Sbjct: 91 PPPAGAMIPPP 101
>AL139100-2|CAI20350.1| 159|Homo sapiens small nuclear
ribonucleoprotein polypeptide C protein.
Length = 159
Score = 111 bits (266), Expect = 4e-24
Identities = 52/71 (73%), Positives = 55/71 (77%), Gaps = 3/71 (4%)
Frame = +3
Query: 75 DTYLTHDSPSVRKTHCTGRKHKDNVKFXYQKWMEEQAQHLIDATTAAFKAGKIAQNPFG- 251
DTYLTHDSPSVRKTHC+GRKHK+NVK YQKWMEEQAQ LID TTAAF+ GKI PF
Sbjct: 10 DTYLTHDSPSVRKTHCSGRKHKENVKDYYQKWMEEQAQSLIDKTTAAFQQGKIPPTPFSA 69
Query: 252 --NKGTAIPPP 278
G IPPP
Sbjct: 70 PPPAGAMIPPP 80
>AK223098-1|BAD96818.1| 159|Homo sapiens small nuclear
ribonucleoprotein polypeptide C variant protein.
Length = 159
Score = 107 bits (257), Expect = 4e-23
Identities = 50/71 (70%), Positives = 54/71 (76%), Gaps = 3/71 (4%)
Frame = +3
Query: 75 DTYLTHDSPSVRKTHCTGRKHKDNVKFXYQKWMEEQAQHLIDATTAAFKAGKIAQNPFG- 251
DTYLTHDSPSVRKTHC+GRKH++N K YQKWMEEQAQ LID TTAAF+ GKI PF
Sbjct: 10 DTYLTHDSPSVRKTHCSGRKHRENEKDYYQKWMEEQAQSLIDKTTAAFQQGKIPPTPFSA 69
Query: 252 --NKGTAIPPP 278
G IPPP
Sbjct: 70 PPPAGAMIPPP 80
>M18465-1|AAA36618.1| 106|Homo sapiens protein ( Human U1 small
nuclear ribonucleoprotein mRNA, 3' end. ).
Length = 106
Score = 71.3 bits (167), Expect = 4e-12
Identities = 35/53 (66%), Positives = 37/53 (69%), Gaps = 3/53 (5%)
Frame = +3
Query: 129 RKHKDNVKFXYQKWMEEQAQHLIDATTAAFKAGKIAQNPFG---NKGTAIPPP 278
RKHK+NVK YQKWMEEQAQ LID TTAAF+ GKI PF G IPPP
Sbjct: 4 RKHKENVKDYYQKWMEEQAQSLIDKTTAAFQQGKIPPTPFSAPPPAGAMIPPP 56
>AL139100-4|CAI20352.1| 118|Homo sapiens small nuclear
ribonucleoprotein polypeptide C protein.
Length = 118
Score = 45.6 bits (103), Expect = 2e-04
Identities = 24/39 (61%), Positives = 25/39 (64%), Gaps = 3/39 (7%)
Frame = +3
Query: 171 MEEQAQHLIDATTAAFKAGKIAQNPFG---NKGTAIPPP 278
MEEQAQ LID TTAAF+ GKI PF G IPPP
Sbjct: 1 MEEQAQSLIDKTTAAFQQGKIPPTPFSAPPPAGAMIPPP 39
>BC086873-1|AAH86873.1| 267|Homo sapiens SLC16A12 protein protein.
Length = 267
Score = 30.3 bits (65), Expect = 8.1
Identities = 12/38 (31%), Positives = 20/38 (52%), Gaps = 1/38 (2%)
Frame = -3
Query: 215 CRCCCID-EMLCLFLHPFLIXKLHIVFMFSSCAVSFPY 105
C CCC+ E L + F++ + ++FM C+ F Y
Sbjct: 17 CLCCCLQQEYSFLLMSDFVVLAVSVLFMAYGCSPLFVY 54
>AL353146-5|CAI12383.2| 486|Homo sapiens solute carrier family 16,
member 12 (monocarboxylic acid transporter 12) protein.
Length = 486
Score = 30.3 bits (65), Expect = 8.1
Identities = 12/38 (31%), Positives = 20/38 (52%), Gaps = 1/38 (2%)
Frame = -3
Query: 215 CRCCCID-EMLCLFLHPFLIXKLHIVFMFSSCAVSFPY 105
C CCC+ E L + F++ + ++FM C+ F Y
Sbjct: 236 CLCCCLQQEYSFLLMSDFVVLAVSVLFMAYGCSPLFVY 273
>AL353146-4|CAI12382.1| 138|Homo sapiens solute carrier family 16,
member 12 (monocarboxylic acid transporter 12) protein.
Length = 138
Score = 30.3 bits (65), Expect = 8.1
Identities = 12/38 (31%), Positives = 20/38 (52%), Gaps = 1/38 (2%)
Frame = -3
Query: 215 CRCCCID-EMLCLFLHPFLIXKLHIVFMFSSCAVSFPY 105
C CCC+ E L + F++ + ++FM C+ F Y
Sbjct: 32 CLCCCLQQEYSFLLMSDFVVLAVSVLFMAYGCSPLFVY 69
>AK127303-1|BAC86925.1| 486|Homo sapiens protein ( Homo sapiens
cDNA FLJ45370 fis, clone BRHIP3017558, weakly similar
to Monocarboxylate transporter 3. ).
Length = 486
Score = 30.3 bits (65), Expect = 8.1
Identities = 12/38 (31%), Positives = 20/38 (52%), Gaps = 1/38 (2%)
Frame = -3
Query: 215 CRCCCID-EMLCLFLHPFLIXKLHIVFMFSSCAVSFPY 105
C CCC+ E L + F++ + ++FM C+ F Y
Sbjct: 236 CLCCCLQQEYSFLLMSDFVVLAVSVLFMAYGCSPLFVY 273
>AK124901-1|BAC85987.1| 354|Homo sapiens protein ( Homo sapiens
cDNA FLJ42911 fis, clone BRHIP3024118, weakly similar
to Monocarboxylate transporter 4. ).
Length = 354
Score = 30.3 bits (65), Expect = 8.1
Identities = 12/38 (31%), Positives = 20/38 (52%), Gaps = 1/38 (2%)
Frame = -3
Query: 215 CRCCCID-EMLCLFLHPFLIXKLHIVFMFSSCAVSFPY 105
C CCC+ E L + F++ + ++FM C+ F Y
Sbjct: 104 CLCCCLQQEYSFLLMSDFVVLAVSVLFMAYGCSPLFVY 141
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 95,201,389
Number of Sequences: 237096
Number of extensions: 1787569
Number of successful extensions: 3822
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 3658
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3811
length of database: 76,859,062
effective HSP length: 89
effective length of database: 55,757,518
effective search space used: 9478778060
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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