Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P16_F_J17
         (781 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U52002-6|AAB37732.1|  142|Caenorhabditis elegans Hypothetical pr...    87   2e-17
AC006816-2|AAK85508.1|  352|Caenorhabditis elegans Hypothetical ...    30   2.1  
AC006816-1|AAN39661.1|  401|Caenorhabditis elegans Hypothetical ...    30   2.1  
AC006761-2|AAF60547.1|  402|Caenorhabditis elegans Hypothetical ...    30   2.1  
AB071420-1|BAB86940.1|  401|Caenorhabditis elegans 2-amino-3-car...    30   2.1  
Z81584-9|CAB04680.2|  334|Caenorhabditis elegans Hypothetical pr...    29   4.9  
Z46343-6|CAL36520.1|  366|Caenorhabditis elegans Hypothetical pr...    28   6.5  
Z46343-5|CAA86458.2|  356|Caenorhabditis elegans Hypothetical pr...    28   6.5  
AF036692-6|AAB88328.1|  397|Caenorhabditis elegans Hypothetical ...    28   6.5  
AC024842-6|AAY86285.1|  215|Caenorhabditis elegans Hypothetical ...    28   6.5  
Z46343-8|CAA86461.1|  549|Caenorhabditis elegans Hypothetical pr...    28   8.6  
Z35598-9|CAA84658.1|  549|Caenorhabditis elegans Hypothetical pr...    28   8.6  

>U52002-6|AAB37732.1|  142|Caenorhabditis elegans Hypothetical
           protein F08B4.7 protein.
          Length = 142

 Score = 86.6 bits (205), Expect = 2e-17
 Identities = 41/69 (59%), Positives = 47/69 (68%), Gaps = 1/69 (1%)
 Frame = +3

Query: 75  DTYLTHDSPSVRKTHCTGRKHKDNVKFXYQKWMEEQAQHLIDATTAAFKAGKI-AQNPFG 251
           DT+LTHDSPSVRKTH  GRKHKDNV+  YQKWME+QAQ L+D T  AF   ++    P  
Sbjct: 10  DTFLTHDSPSVRKTHNGGRKHKDNVRMFYQKWMEDQAQKLVDQTARAFATNRMQGAVPRT 69

Query: 252 NKGTAIPPP 278
             G A  PP
Sbjct: 70  TMGMAPVPP 78



 Score = 29.9 bits (64), Expect = 2.1
 Identities = 11/15 (73%), Positives = 12/15 (80%), Gaps = 1/15 (6%)
 Frame = +2

Query: 47 MPKYYCDYC-RYLPH 88
          MPKYYCDYC  +L H
Sbjct: 1  MPKYYCDYCDTFLTH 15


>AC006816-2|AAK85508.1|  352|Caenorhabditis elegans Hypothetical
           protein Y71D11A.3a protein.
          Length = 352

 Score = 29.9 bits (64), Expect = 2.1
 Identities = 10/24 (41%), Positives = 14/24 (58%), Gaps = 1/24 (4%)
 Frame = -3

Query: 542 LLLFVHRWSIHKWRSHL-SHWSHW 474
           ++LFVH W +H W   L  +W  W
Sbjct: 180 VVLFVHPWDMHMWDGRLDKYWMPW 203


>AC006816-1|AAN39661.1|  401|Caenorhabditis elegans Hypothetical
           protein Y71D11A.3b protein.
          Length = 401

 Score = 29.9 bits (64), Expect = 2.1
 Identities = 10/24 (41%), Positives = 14/24 (58%), Gaps = 1/24 (4%)
 Frame = -3

Query: 542 LLLFVHRWSIHKWRSHL-SHWSHW 474
           ++LFVH W +H W   L  +W  W
Sbjct: 229 VVLFVHPWDMHMWDGRLDKYWMPW 252


>AC006761-2|AAF60547.1|  402|Caenorhabditis elegans Hypothetical
           protein Y41G9A.5 protein.
          Length = 402

 Score = 29.9 bits (64), Expect = 2.1
 Identities = 18/69 (26%), Positives = 28/69 (40%)
 Frame = +2

Query: 248 WQQRHCNTTTLGSFGNGTRRTPTSCTRWSSRYDTSSIYGSWRSYGTTNDDGSTWANAAND 427
           W +R         +GN          +WSS+Y  +  Y S   YG  +    TW N+  +
Sbjct: 18  WFRRQYGWAGSPYYGNAQYYETQPQQQWSSQYQNNQNYYSPYFYGYQHQ--QTWQNSNQN 75

Query: 428 GNETAYDGP 454
             +T Y+ P
Sbjct: 76  QYQTLYNRP 84


>AB071420-1|BAB86940.1|  401|Caenorhabditis elegans
           2-amino-3-carboxylmuconate-6-semialdehydedecarboxylase
           protein.
          Length = 401

 Score = 29.9 bits (64), Expect = 2.1
 Identities = 10/24 (41%), Positives = 14/24 (58%), Gaps = 1/24 (4%)
 Frame = -3

Query: 542 LLLFVHRWSIHKWRSHL-SHWSHW 474
           ++LFVH W +H W   L  +W  W
Sbjct: 229 VVLFVHPWDMHMWDGRLDKYWMPW 252


>Z81584-9|CAB04680.2|  334|Caenorhabditis elegans Hypothetical
           protein T04C12.2a protein.
          Length = 334

 Score = 28.7 bits (61), Expect = 4.9
 Identities = 10/28 (35%), Positives = 17/28 (60%)
 Frame = -3

Query: 248 KWILSNFACFECRCCCIDEMLCLFLHPF 165
           KW+L N  C+   CC +D ++C  + P+
Sbjct: 64  KWVLLNTHCW---CCYVDILICSLITPY 88


>Z46343-6|CAL36520.1|  366|Caenorhabditis elegans Hypothetical
           protein T23F11.3b protein.
          Length = 366

 Score = 28.3 bits (60), Expect = 6.5
 Identities = 14/45 (31%), Positives = 21/45 (46%)
 Frame = +2

Query: 122 HRKKT*RQCEVXLSEMDGGTSTTSHRCNNSGIQSRQNCSKSIWQQ 256
           HR +T   C    S  DGG +    R +N+  +S  N  +S+  Q
Sbjct: 13  HRTQTTSVCNHLFSPGDGGPTFAPQRDSNTSSRSSSNAKESVLMQ 57


>Z46343-5|CAA86458.2|  356|Caenorhabditis elegans Hypothetical
           protein T23F11.3a protein.
          Length = 356

 Score = 28.3 bits (60), Expect = 6.5
 Identities = 14/45 (31%), Positives = 21/45 (46%)
 Frame = +2

Query: 122 HRKKT*RQCEVXLSEMDGGTSTTSHRCNNSGIQSRQNCSKSIWQQ 256
           HR +T   C    S  DGG +    R +N+  +S  N  +S+  Q
Sbjct: 13  HRTQTTSVCNHLFSPGDGGPTFAPQRDSNTSSRSSSNAKESVLMQ 57


>AF036692-6|AAB88328.1|  397|Caenorhabditis elegans Hypothetical
           protein C44B12.5 protein.
          Length = 397

 Score = 28.3 bits (60), Expect = 6.5
 Identities = 18/63 (28%), Positives = 24/63 (38%), Gaps = 1/63 (1%)
 Frame = +3

Query: 93  DSPSVRKTHCTGRKHK-DNVKFXYQKWMEEQAQHLIDATTAAFKAGKIAQNPFGNKGTAI 269
           DS      H  GR HK D+       W  ++    +     A ++   AQNP  N   A 
Sbjct: 239 DSDEKDGKHGRGRFHKVDSTYLSEANWEPKKYHKNVKCVCCAPRSSPAAQNPSYNNNAAQ 298

Query: 270 PPP 278
            PP
Sbjct: 299 SPP 301


>AC024842-6|AAY86285.1|  215|Caenorhabditis elegans Hypothetical
           protein Y59H11AR.5 protein.
          Length = 215

 Score = 28.3 bits (60), Expect = 6.5
 Identities = 20/80 (25%), Positives = 29/80 (36%)
 Frame = +2

Query: 209 SGIQSRQNCSKSIWQQRHCNTTTLGSFGNGTRRTPTSCTRWSSRYDTSSIYGSWRSYGTT 388
           SG+Q+++  S    Q     +   GS   G +RT        S+Y  +     W     +
Sbjct: 107 SGVQNQREISYVTQQALGTMSQGSGSIWIGAKRTTLCKASRLSKYCNTLTSFQWTDGSAS 166

Query: 389 NDDGSTWANAANDGNETAYD 448
             DG  W N   D N    D
Sbjct: 167 GLDGLIWNNNQPDNNYNRTD 186


>Z46343-8|CAA86461.1|  549|Caenorhabditis elegans Hypothetical
           protein F10F2.9 protein.
          Length = 549

 Score = 27.9 bits (59), Expect = 8.6
 Identities = 13/40 (32%), Positives = 25/40 (62%), Gaps = 1/40 (2%)
 Frame = +2

Query: 335 SRYDTSSIYGSWRSYGTTNDDGSTWANAAN-DGNETAYDG 451
           S  + ++ YG+  S+GT ++DG++W  + N +GN   + G
Sbjct: 241 SNNNNNNNYGN--SWGTNDNDGNSWKGSGNSNGNSDNWGG 278


>Z35598-9|CAA84658.1|  549|Caenorhabditis elegans Hypothetical
           protein F10F2.9 protein.
          Length = 549

 Score = 27.9 bits (59), Expect = 8.6
 Identities = 13/40 (32%), Positives = 25/40 (62%), Gaps = 1/40 (2%)
 Frame = +2

Query: 335 SRYDTSSIYGSWRSYGTTNDDGSTWANAAN-DGNETAYDG 451
           S  + ++ YG+  S+GT ++DG++W  + N +GN   + G
Sbjct: 241 SNNNNNNNYGN--SWGTNDNDGNSWKGSGNSNGNSDNWGG 278


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,243,882
Number of Sequences: 27780
Number of extensions: 297732
Number of successful extensions: 882
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 823
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 880
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1882685842
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)