Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P16_F_J15
(625 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC4F6.18c |arf1||ADP-ribosylation factor Arf1|Schizosaccharomy... 142 4e-35
SPBC1539.08 |||ADP-ribosylation factor, Arf family|Schizosacchar... 128 6e-31
SPAC22F3.05c |alp41||ADP-ribosylation factor Alp41|Schizosacchar... 103 2e-23
SPBC31F10.06c |sar1||ADP-ribosylation factor Sar1|Schizosaccharo... 64 2e-11
SPBC1703.10 |ypt1||GTPase Ypt1|Schizosaccharomyces pombe|chr 2||... 34 0.019
SPAC1B3.11c |ypt4||GTPase Ypt4|Schizosaccharomyces pombe|chr 1||... 32 0.077
SPAC9E9.07c |ypt2||GTPase Ypt2 |Schizosaccharomyces pombe|chr 1|... 31 0.14
SPAC4C5.02c |ryh1|hos1|GTPase Ryh1|Schizosaccharomyces pombe|chr... 30 0.31
SPAC18G6.03 |ypt3||GTPase Ypt3|Schizosaccharomyces pombe|chr 1||... 30 0.31
SPAC6F6.15 |ypt5||GTPase Ypt5|Schizosaccharomyces pombe|chr 1|||... 29 0.41
SPBC1289.03c |spi1||Ran GTPase Spi1|Schizosaccharomyces pombe|ch... 29 0.72
SPAC20G4.02c |fus1||formin Fus1|Schizosaccharomyces pombe|chr 1|... 27 1.7
SPAPB1A10.10c |ypt71||GTPase Ypt71|Schizosaccharomyces pombe|chr... 27 1.7
SPAC1F7.04 |rho1||Rho family GTPase Rho1|Schizosaccharomyces pom... 26 5.1
SPBC21D10.09c |||ubiquitin-protein ligase E3 |Schizosaccharomyce... 25 6.7
SPAC16A10.04 |rho4||Rho family GTPase Rho4|Schizosaccharomyces p... 25 6.7
SPAC23H3.13c |gpa2|git8|heterotrimeric G protein alpha-2 subunit... 25 8.9
SPBC405.04c |ypt7||GTPase Ypt7|Schizosaccharomyces pombe|chr 2||... 25 8.9
SPBC19F8.05 |||sequence orphan|Schizosaccharomyces pombe|chr 2||... 25 8.9
>SPBC4F6.18c |arf1||ADP-ribosylation factor Arf1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 180
Score = 142 bits (344), Expect = 4e-35
Identities = 61/131 (46%), Positives = 92/131 (70%)
Frame = +3
Query: 3 GSNVEEVVWKXLRFVMWDLGGQQSLXSAWNTYYTNSEFVIMVIDSTDRQRLGISREELHR 182
G NVE V ++ + F +WD+GGQ + W Y+ N++ +I V+DS DR+R+ + EEL R
Sbjct: 50 GFNVETVEYRNISFTVWDVGGQDKIRPLWRHYFQNTQGIIFVVDSNDRERISEAHEELQR 109
Query: 183 MLVHEELSKACLLVFANKQDVKGSMTAAEISEQLDLTSIKQHPWHIQACCALTGEGLHLG 362
ML +EL A LLVFANKQD+ +M AAEI+++L L S++ W+IQA CA +G+GL+ G
Sbjct: 110 MLNEDELRDALLLVFANKQDLPNAMNAAEITDKLGLHSLRHRQWYIQATCATSGDGLYEG 169
Query: 363 LEWIASRIKKK 395
LEW+++ +K +
Sbjct: 170 LEWLSTNLKNQ 180
>SPBC1539.08 |||ADP-ribosylation factor, Arf
family|Schizosaccharomyces pombe|chr 2|||Manual
Length = 184
Score = 128 bits (309), Expect = 6e-31
Identities = 55/131 (41%), Positives = 85/131 (64%)
Frame = +3
Query: 3 GSNVEEVVWKXLRFVMWDLGGQQSLXSAWNTYYTNSEFVIMVIDSTDRQRLGISREELHR 182
G NVE V +K ++F +WD+GGQ + W Y+T ++ +I V+DS D R+ +R+ELHR
Sbjct: 54 GFNVETVTYKNIKFNVWDVGGQDKIRPLWRHYFTGTKGLIFVVDSADSNRISEARQELHR 113
Query: 183 MLVHEELSKACLLVFANKQDVKGSMTAAEISEQLDLTSIKQHPWHIQACCALTGEGLHLG 362
++ E+ LLV ANKQD+ G+++ A+I++ L L +K W++Q CALTG+GL G
Sbjct: 114 IISDREMRDCLLLVLANKQDLPGALSPAQITDVLQLDKLKDRLWNVQPTCALTGDGLLEG 173
Query: 363 LEWIASRIKKK 395
L W++ K K
Sbjct: 174 LAWLSQNAKLK 184
>SPAC22F3.05c |alp41||ADP-ribosylation factor
Alp41|Schizosaccharomyces pombe|chr 1|||Manual
Length = 186
Score = 103 bits (247), Expect = 2e-23
Identities = 48/130 (36%), Positives = 79/130 (60%)
Frame = +3
Query: 3 GSNVEEVVWKXLRFVMWDLGGQQSLXSAWNTYYTNSEFVIMVIDSTDRQRLGISREELHR 182
G + + + LRF +WD+GGQ++L + W Y+ ++E +I V+DS D RL R L
Sbjct: 49 GFQIRTLEVEGLRFTIWDIGGQKTLRNFWKNYFESTEAIIWVVDSLDDLRLEECRNTLQE 108
Query: 183 MLVHEELSKACLLVFANKQDVKGSMTAAEISEQLDLTSIKQHPWHIQACCALTGEGLHLG 362
+LV E+L +LV ANK DV G++++ EIS+ L+++ K W I + ALTG +
Sbjct: 109 LLVEEKLLFTSILVLANKSDVSGALSSEEISKILNISKYKSSHWRIFSVSALTGLNIKDA 168
Query: 363 LEWIASRIKK 392
+ W+A+ +K+
Sbjct: 169 ISWLANDLKE 178
>SPBC31F10.06c |sar1||ADP-ribosylation factor
Sar1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 190
Score = 64.1 bits (149), Expect = 2e-11
Identities = 38/134 (28%), Positives = 63/134 (47%), Gaps = 10/134 (7%)
Frame = +3
Query: 15 EEVVWKXLRFVMWDLGGQQSLXSAWNTYYTNSEFVIMVIDSTDRQRLGISREELHRMLVH 194
EE+ +RF +DLGG Q W Y+ ++ ++D D +RL S+ EL +L
Sbjct: 57 EELAIGNVRFTTFDLGGHQQARRLWRDYFPEVNGIVYLVDCCDFERLSESKAELDALLAM 116
Query: 195 EELSKACLLVFANKQDVKGSMTAAEISEQLDL--TSIKQ--------HPWHIQACCALTG 344
EEL++ L+ NK D G+++ E+ L L T+ K P + C +
Sbjct: 117 EELARVPFLILGNKIDAPGAISEDELKAALGLYQTTGKGVSKPVPGIRPIEVFMCSVVLR 176
Query: 345 EGLHLGLEWIASRI 386
+G G +W+A +
Sbjct: 177 QGYGEGFKWLAQYV 190
>SPBC1703.10 |ypt1||GTPase Ypt1|Schizosaccharomyces pombe|chr
2|||Manual
Length = 203
Score = 33.9 bits (74), Expect = 0.019
Identities = 20/76 (26%), Positives = 37/76 (48%)
Frame = +3
Query: 18 EVVWKXLRFVMWDLGGQQSLXSAWNTYYTNSEFVIMVIDSTDRQRLGISREELHRMLVHE 197
E+ K ++ +WD GQ+ + ++YY + +I+V D TD+ ++ L + +
Sbjct: 51 ELEGKTVKLQIWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQDSFNNVKQWLQEIDRYA 110
Query: 198 ELSKACLLVFANKQDV 245
LLV NK D+
Sbjct: 111 VEGVNRLLV-GNKSDM 125
>SPAC1B3.11c |ypt4||GTPase Ypt4|Schizosaccharomyces pombe|chr
1|||Manual
Length = 234
Score = 31.9 bits (69), Expect = 0.077
Identities = 20/76 (26%), Positives = 35/76 (46%), Gaps = 3/76 (3%)
Frame = +3
Query: 30 KXLRFVMWDLGGQQSLXSAWNTYYTNSEFVIMVIDSTDRQRLGISREELHRMLVHEEL-- 203
K ++ +WD GQ+ S YY + ++V D T++ S EEL L
Sbjct: 60 KRIKLQIWDTAGQEKFRSVARNYYRGAAGAVLVYDVTNKD----SFEELSSWLSDIRAMA 115
Query: 204 -SKACLLVFANKQDVK 248
S C+++ +K D++
Sbjct: 116 PSTICVVLAGSKSDLQ 131
>SPAC9E9.07c |ypt2||GTPase Ypt2 |Schizosaccharomyces pombe|chr
1|||Manual
Length = 200
Score = 31.1 bits (67), Expect = 0.14
Identities = 11/44 (25%), Positives = 24/44 (54%)
Frame = +3
Query: 18 EVVWKXLRFVMWDLGGQQSLXSAWNTYYTNSEFVIMVIDSTDRQ 149
E+ K ++ +WD GQ+ + YY + ++++ D TD++
Sbjct: 52 ELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLLYDVTDKK 95
>SPAC4C5.02c |ryh1|hos1|GTPase Ryh1|Schizosaccharomyces pombe|chr
1|||Manual
Length = 201
Score = 29.9 bits (64), Expect = 0.31
Identities = 17/72 (23%), Positives = 33/72 (45%)
Frame = +3
Query: 30 KXLRFVMWDLGGQQSLXSAWNTYYTNSEFVIMVIDSTDRQRLGISREELHRMLVHEELSK 209
+ +R +WD GQ+ S +Y +S I+V D T+ ++ E+ + E
Sbjct: 58 RTVRLQLWDTAGQERFRSLIPSYIRDSSVAIIVYDITNHNSF-VNTEKWIEDVRAERGDD 116
Query: 210 ACLLVFANKQDV 245
+++ NK D+
Sbjct: 117 VIIVLVGNKTDL 128
>SPAC18G6.03 |ypt3||GTPase Ypt3|Schizosaccharomyces pombe|chr
1|||Manual
Length = 214
Score = 29.9 bits (64), Expect = 0.31
Identities = 16/72 (22%), Positives = 32/72 (44%)
Frame = +3
Query: 30 KXLRFVMWDLGGQQSLXSAWNTYYTNSEFVIMVIDSTDRQRLGISREELHRMLVHEELSK 209
K ++ +WD GQ+ + + YY + ++V D T + L + H + S
Sbjct: 57 KKIKAQIWDTAGQERYRAITSAYYRGAVGALIVYDITKQSSFDNVGRWLKELREHAD-SN 115
Query: 210 ACLLVFANKQDV 245
+++ NK D+
Sbjct: 116 IVIMLVGNKTDL 127
>SPAC6F6.15 |ypt5||GTPase Ypt5|Schizosaccharomyces pombe|chr
1|||Manual
Length = 211
Score = 29.5 bits (63), Expect = 0.41
Identities = 19/78 (24%), Positives = 33/78 (42%)
Frame = +3
Query: 36 LRFVMWDLGGQQSLXSAWNTYYTNSEFVIMVIDSTDRQRLGISREELHRMLVHEELSKAC 215
++ +WD GQ+ S YY N+ I+V D T L ++ + + L +
Sbjct: 64 VKLEIWDTAGQERYKSLAPMYYRNANCAIVVYDITQAASLEKAKSWI-KELQRQAPEGIV 122
Query: 216 LLVFANKQDVKGSMTAAE 269
+ + NK D+ A E
Sbjct: 123 IALAGNKLDLAQERRAVE 140
>SPBC1289.03c |spi1||Ran GTPase Spi1|Schizosaccharomyces pombe|chr
2|||Manual
Length = 216
Score = 28.7 bits (61), Expect = 0.72
Identities = 12/35 (34%), Positives = 18/35 (51%)
Frame = +3
Query: 42 FVMWDLGGQQSLXSAWNTYYTNSEFVIMVIDSTDR 146
F +WD GQ+ L + YY + I++ D T R
Sbjct: 60 FNVWDTAGQEKLGGLRDGYYIQGQCGIIMFDVTSR 94
>SPAC20G4.02c |fus1||formin Fus1|Schizosaccharomyces pombe|chr
1|||Manual
Length = 1372
Score = 27.5 bits (58), Expect = 1.7
Identities = 14/39 (35%), Positives = 22/39 (56%)
Frame = +3
Query: 63 GQQSLXSAWNTYYTNSEFVIMVIDSTDRQRLGISREELH 179
G S+ S + T TNS+ V+ D+TD +S+ EL+
Sbjct: 520 GYSSVTSGYGT--TNSKKVVASYDNTDDNEYSVSKSELY 556
>SPAPB1A10.10c |ypt71||GTPase Ypt71|Schizosaccharomyces pombe|chr
1|||Manual
Length = 208
Score = 27.5 bits (58), Expect = 1.7
Identities = 18/94 (19%), Positives = 37/94 (39%), Gaps = 3/94 (3%)
Frame = +3
Query: 30 KXLRFVMWDLGGQQSLXSAWNTYYTNSEFVIMVIDSTDRQRLGISREELHRMLVHEELSK 209
K + +WD GQ+ S +Y ++ ++V + + + S E + +++
Sbjct: 55 KLVTLQLWDTAGQERFQSLGMAFYRGADCCVIVYNVNNSKSFD-SVENWRQEFLYQTSQD 113
Query: 210 AC---LLVFANKQDVKGSMTAAEISEQLDLTSIK 302
C ++ N+ D S A + LD K
Sbjct: 114 ECAFPFIIVGNQIDKDASKRAVSLHRALDYCKSK 147
>SPAC1F7.04 |rho1||Rho family GTPase Rho1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 202
Score = 25.8 bits (54), Expect = 5.1
Identities = 25/98 (25%), Positives = 42/98 (42%)
Frame = +3
Query: 18 EVVWKXLRFVMWDLGGQQSLXSAWNTYYTNSEFVIMVIDSTDRQRLGISREELHRMLVHE 197
EV + + +WD GQ+ Y +S +++ L +E+ ++H
Sbjct: 48 EVDGRHVELALWDTAGQEDYDRLRPLSYPDSHVILICFAVDSPDSLDNVQEKWISEVLHF 107
Query: 198 ELSKACLLVFANKQDVKGSMTAAEISEQLDLTSIKQHP 311
S LLV A K D++ +I E+L T+ QHP
Sbjct: 108 CSSLPILLV-ACKADLRND---PKIIEELSKTN--QHP 139
>SPBC21D10.09c |||ubiquitin-protein ligase E3 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1610
Score = 25.4 bits (53), Expect = 6.7
Identities = 12/23 (52%), Positives = 15/23 (65%)
Frame = +1
Query: 484 SINFIL*LVLKYFLFIDYYDNHL 552
+I IL L+YFL D+ DNHL
Sbjct: 692 TIKNILFTTLEYFLTNDWVDNHL 714
>SPAC16A10.04 |rho4||Rho family GTPase Rho4|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 203
Score = 25.4 bits (53), Expect = 6.7
Identities = 17/90 (18%), Positives = 34/90 (37%)
Frame = +3
Query: 30 KXLRFVMWDLGGQQSLXSAWNTYYTNSEFVIMVIDSTDRQRLGISREELHRMLVHEELSK 209
K + +WD GQ+ Y NS +++ L E+ + + H +
Sbjct: 62 KVIELALWDTAGQEEYDRLRPLSYPNSNVILLCFSIDCPASLNNVTEKWYPEVQH-FCPR 120
Query: 210 ACLLVFANKQDVKGSMTAAEISEQLDLTSI 299
+++ K D++ A E+ LT +
Sbjct: 121 TPIVLVGLKADLRKDRNATEVLRTQGLTPV 150
>SPAC23H3.13c |gpa2|git8|heterotrimeric G protein alpha-2 subunit
Gpa2 |Schizosaccharomyces pombe|chr 1|||Manual
Length = 354
Score = 25.0 bits (52), Expect = 8.9
Identities = 14/57 (24%), Positives = 25/57 (43%)
Frame = +3
Query: 36 LRFVMWDLGGQQSLXSAWNTYYTNSEFVIMVIDSTDRQRLGISREELHRMLVHEELS 206
L+ M+D+GGQ++ W + N +I + D + R R + E +S
Sbjct: 192 LQIRMFDVGGQRTERRKWIYCFENVNSIIFCVSLNDYDKKLYERAAPERNRLVESIS 248
>SPBC405.04c |ypt7||GTPase Ypt7|Schizosaccharomyces pombe|chr
2|||Manual
Length = 205
Score = 25.0 bits (52), Expect = 8.9
Identities = 9/35 (25%), Positives = 17/35 (48%)
Frame = +3
Query: 30 KXLRFVMWDLGGQQSLXSAWNTYYTNSEFVIMVID 134
K + +WD GQ+ S +Y ++ ++V D
Sbjct: 55 KVVTLQLWDTAGQERFQSLGVAFYRGADCCVLVYD 89
>SPBC19F8.05 |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 218
Score = 25.0 bits (52), Expect = 8.9
Identities = 11/26 (42%), Positives = 15/26 (57%)
Frame = +3
Query: 231 NKQDVKGSMTAAEISEQLDLTSIKQH 308
+K+D E E+ D+TSIKQH
Sbjct: 170 SKRDGDNMRLFIETEEEADMTSIKQH 195
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,303,781
Number of Sequences: 5004
Number of extensions: 42811
Number of successful extensions: 96
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 95
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 96
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 275671126
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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