Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P16_F_J14
         (636 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC9.03c |brr2|spp41|U5 snRNP complex subunit Brr2 |Schizosacch...    26   4.0  
SPAC4A8.07c |||sphingoid long chain base |Schizosaccharomyces po...    26   4.0  
SPAC110.04c |pss1|ssp1, SPAP14E8.01c|heat shock protein Pss1|Sch...    26   4.0  
SPBC887.02 |||ClC chloride channel|Schizosaccharomyces pombe|chr...    25   6.9  
SPAC4H3.14c |||sequence orphan|Schizosaccharomyces pombe|chr 1||...    25   9.1  

>SPAC9.03c |brr2|spp41|U5 snRNP complex subunit Brr2
            |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2176

 Score = 26.2 bits (55), Expect = 4.0
 Identities = 26/110 (23%), Positives = 45/110 (40%), Gaps = 1/110 (0%)
 Frame = +1

Query: 73   GLNASAIDSTKLDNSLSSAPSVPKRRVLKNFAHISQAPPDTVHHTTGSQLELECLIIGKP 252
            GL+ S  ++  L   L ++P     + + NF+   +  P T+H  + S      L++   
Sbjct: 1527 GLSVSVANARDLGEWLGTSP-----QCIFNFSPKDRPNPLTIHLQSFSITHFPSLMLAMS 1581

Query: 253  APIVEWLKNGEPIEEYEEATNEVILTDPESFAK-IVSKLVVVAPTDGDRY 399
             PI   LKN        +  + ++ T     AK +   LV  +  D D Y
Sbjct: 1582 KPIYRSLKN-----FISQRKSTIVFTPDRKVAKQLAFDLVTFSMADEDEY 1626


>SPAC4A8.07c |||sphingoid long chain base |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 458

 Score = 26.2 bits (55), Expect = 4.0
 Identities = 13/41 (31%), Positives = 20/41 (48%)
 Frame = +1

Query: 268 WLKNGEPIEEYEEATNEVILTDPESFAKIVSKLVVVAPTDG 390
           W    EP+     +  EV+LT  +  AK ++K + V   DG
Sbjct: 125 WESEAEPVFSSAHSICEVVLTRRKDHAKSIAKNLDVGSYDG 165


>SPAC110.04c |pss1|ssp1, SPAP14E8.01c|heat shock protein
           Pss1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 720

 Score = 26.2 bits (55), Expect = 4.0
 Identities = 19/54 (35%), Positives = 28/54 (51%)
 Frame = +1

Query: 217 QLELECLIIGKPAPIVEWLKNGEPIEEYEEATNEVILTDPESFAKIVSKLVVVA 378
           +L+L  +++ + A IVE  +  EP+E   E   E    +P    K V KLV VA
Sbjct: 488 RLDLHGILVVEQAYIVEEQEVEEPVETSPEEEAEKKTDEPVKMRK-VKKLVKVA 540


>SPBC887.02 |||ClC chloride channel|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 667

 Score = 25.4 bits (53), Expect = 6.9
 Identities = 10/22 (45%), Positives = 15/22 (68%)
 Frame = +2

Query: 50  WR*FRCNAASMRALLIARNWTT 115
           W  F C+A+S+ AL + R+W T
Sbjct: 252 WYEFLCSASSVVALQLIRSWHT 273


>SPAC4H3.14c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 345

 Score = 25.0 bits (52), Expect = 9.1
 Identities = 11/21 (52%), Positives = 14/21 (66%)
 Frame = +1

Query: 292 EEYEEATNEVILTDPESFAKI 354
           EEYEE  NE +  DP+  A+I
Sbjct: 188 EEYEELRNECLKHDPQLDAEI 208


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.315    0.132    0.391 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,353,237
Number of Sequences: 5004
Number of extensions: 43493
Number of successful extensions: 144
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 141
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 144
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 283719918
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)