Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P16_F_J14
(636 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
04_04_1272 - 32288142-32288456,32288538-32288670,32288780-322890... 31 0.58
06_01_0318 - 2284481-2284594,2285340-2286044,2286589-2286609,228... 30 1.3
05_07_0286 - 28988294-28988383,28988486-28989007,28989117-289897... 29 3.1
01_05_0147 + 18597194-18597643,18598347-18598681,18600073-186001... 29 3.1
12_02_0139 - 14277389-14279119 29 4.1
09_06_0064 + 20627265-20627538,20628062-20628274,20628772-206288... 29 4.1
07_03_0015 - 12447947-12448393 29 4.1
10_08_0154 + 15266430-15266953,15267748-15267820,15267893-152679... 28 5.4
05_01_0396 - 3121189-3121226,3121552-3121609,3121938-3122060,312... 28 5.4
03_05_0623 - 26208309-26208343,26208931-26210220,26210350-26210419 28 5.4
12_01_0906 + 8799284-8799441,8800865-8801690,8801933-8802055,880... 28 7.1
12_01_0044 + 349798-350173,350745-350905,351527-351662,352110-35... 28 7.1
05_05_0368 + 24449793-24451199,24451867-24451927,24452256-24452710 27 9.4
02_05_0844 - 32144417-32144764,32145588-32145686,32146218-321464... 27 9.4
01_06_1714 - 39368509-39369153,39369607-39369850,39369995-393701... 27 9.4
01_05_0239 - 19712962-19713381 27 9.4
01_03_0237 + 14068713-14069315,14069654-14069914 27 9.4
>04_04_1272 -
32288142-32288456,32288538-32288670,32288780-32289020,
32289124-32289340,32289557-32289681,32290873-32292157
Length = 771
Score = 31.5 bits (68), Expect = 0.58
Identities = 9/25 (36%), Positives = 19/25 (76%)
Frame = -1
Query: 402 GIPVAISGSDHDQLADDLGEALRVG 328
G+P+++SG DH ++ D+L +++G
Sbjct: 686 GLPLSVSGPDHTEMEDELARCVQIG 710
>06_01_0318 -
2284481-2284594,2285340-2286044,2286589-2286609,
2287186-2287257,2287762-2287842,2288059-2288133,
2288197-2288484
Length = 451
Score = 30.3 bits (65), Expect = 1.3
Identities = 19/48 (39%), Positives = 25/48 (52%), Gaps = 1/48 (2%)
Frame = +3
Query: 240 HRETSADRRMAEERGTDRGIRRGN*RS-HPDRPGELRQDRQQAGRGRS 380
H++ DR E+R DR RR + S + DR G R+DR GRS
Sbjct: 305 HKDREHDRHAREDR--DRDYRRSSYSSRNVDRQGRERRDRDSDRHGRS 350
>05_07_0286 -
28988294-28988383,28988486-28989007,28989117-28989758,
28990554-28990597,28990836-28991016
Length = 492
Score = 29.1 bits (62), Expect = 3.1
Identities = 21/87 (24%), Positives = 39/87 (44%)
Frame = +1
Query: 133 SVPKRRVLKNFAHISQAPPDTVHHTTGSQLELECLIIGKPAPIVEWLKNGEPIEEYEEAT 312
+V +R L+ FA + +APP T + E+ ++G+P P P + + +
Sbjct: 75 AVQQRSHLERFAALDEAPPPAPEETVVTGGEMVDYMLGQPPPTT-------PGPQSQVSF 127
Query: 313 NEVILTDPESFAKIVSKLVVVAPTDGD 393
+++ +D FA KL + P D
Sbjct: 128 DKLTFSDVLQFADFGPKLALNQPAASD 154
>01_05_0147 +
18597194-18597643,18598347-18598681,18600073-18600147,
18600325-18600427,18601554-18601642,18602953-18603064,
18604093-18604146,18604271-18604319,18606236-18606347,
18606389-18606436,18607000-18607327
Length = 584
Score = 29.1 bits (62), Expect = 3.1
Identities = 23/79 (29%), Positives = 36/79 (45%)
Frame = +3
Query: 135 RSQA*GSEELRAYIAGASRHRASYHWLAIRAGMSDHRETSADRRMAEERGTDRGIRRGN* 314
RS++ GS+ +A + + RHR +H + R+ S R+ +RR R + RRG
Sbjct: 56 RSRSSGSKRRKAS-SSSRRHRHHHHKSSGRSRRS--RDDDDERRRRRRRRDEERGRRGGD 112
Query: 315 RSHPDRPGELRQDRQQAGR 371
S G DR + R
Sbjct: 113 ASESSGSGSEEPDRAEEAR 131
>12_02_0139 - 14277389-14279119
Length = 576
Score = 28.7 bits (61), Expect = 4.1
Identities = 14/30 (46%), Positives = 18/30 (60%), Gaps = 1/30 (3%)
Frame = +1
Query: 130 PSVPKRRVLK-NFAHISQAPPDTVHHTTGS 216
P+V RRVL NFA + + PP + H GS
Sbjct: 79 PTVDPRRVLSGNFAPVDELPPTSCHVIRGS 108
>09_06_0064 +
20627265-20627538,20628062-20628274,20628772-20628827,
20629417-20629533,20629701-20629820,20629910-20630004,
20630092-20630185,20630406-20630537,20631190-20631302,
20631423-20631657,20631950-20632028,20632029-20632161,
20632780-20632821,20632902-20632950,20633443-20633525,
20633686-20633802,20633893-20633956,20634334-20634486,
20635043-20635126,20635207-20635401,20635507-20635578,
20635599-20635610
Length = 843
Score = 28.7 bits (61), Expect = 4.1
Identities = 15/39 (38%), Positives = 21/39 (53%)
Frame = +3
Query: 207 HWLAIRAGMSDHRETSADRRMAEERGTDRGIRRGN*RSH 323
+W I +SDH D+ +A E GTD RRG+ +H
Sbjct: 569 YWFKI---LSDHLPDLVDKAVASEGGTDDAKRRGDAFAH 604
>07_03_0015 - 12447947-12448393
Length = 148
Score = 28.7 bits (61), Expect = 4.1
Identities = 11/21 (52%), Positives = 12/21 (57%)
Frame = -3
Query: 496 EASPSLISPPRHRQCTQWWWR 434
EA P PPR C +WWWR
Sbjct: 32 EARPRATLPPR---CRRWWWR 49
>10_08_0154 +
15266430-15266953,15267748-15267820,15267893-15267949,
15268248-15268303,15269584-15269797,15270497-15270538,
15270661-15270735,15270820-15270903,15271880-15271944,
15272436-15272655,15272820-15272908,15273326-15273440,
15273519-15273554
Length = 549
Score = 28.3 bits (60), Expect = 5.4
Identities = 17/52 (32%), Positives = 21/52 (40%), Gaps = 2/52 (3%)
Frame = +3
Query: 228 GMSDHRETSADRRMAEERGTDRGIRRGN*--RSHPDRPGELRQDRQQAGRGR 377
G D S R E+R DR RG R H DR ++R RG+
Sbjct: 39 GRDDEERGSKRSRSGEDRDRDRDRHRGGGGGREHRDRDDGKEKERSSRSRGK 90
>05_01_0396 -
3121189-3121226,3121552-3121609,3121938-3122060,
3122170-3122323,3122590-3122678,3123185-3123410,
3123575-3123760,3123859-3123914,3124381-3124464,
3124547-3124627,3124773-3125045,3125143-3125263,
3126094-3126230,3126406-3126697,3127401-3127585
Length = 700
Score = 28.3 bits (60), Expect = 5.4
Identities = 17/43 (39%), Positives = 22/43 (51%)
Frame = -2
Query: 437 ALSRLSPALAAQVYRSPSVGATTTSLLTILAKLSGSVRMTSLV 309
A S L A +V R+PS GAT + + GS RM SL+
Sbjct: 257 AESILFAGKAIRVLRNPSPGATLQESMNQSQNVKGSYRMQSLI 299
>03_05_0623 - 26208309-26208343,26208931-26210220,26210350-26210419
Length = 464
Score = 28.3 bits (60), Expect = 5.4
Identities = 18/43 (41%), Positives = 22/43 (51%), Gaps = 1/43 (2%)
Frame = -1
Query: 447 SGGGAVSLEPRAGRAGIPVAISGSDHDQLADDLGEA-LRVGQD 322
S GGA +PR G G VA +G+ L DL A +VG D
Sbjct: 360 SNGGASQQQPRGGGGGWCVASAGATEADLQADLDYACAQVGVD 402
>12_01_0906 +
8799284-8799441,8800865-8801690,8801933-8802055,
8802144-8802210,8802611-8802714,8802798-8802900,
8803103-8803401,8804009-8804263,8805471-8805776,
8805866-8806194,8806829-8806916,8807027-8807164,
8807438-8807458
Length = 938
Score = 27.9 bits (59), Expect = 7.1
Identities = 15/31 (48%), Positives = 17/31 (54%)
Frame = +3
Query: 240 HRETSADRRMAEERGTDRGIRRGN*RSHPDR 332
HR + RR +ER DRG R RS PDR
Sbjct: 156 HRRDESSRRQRDERRRDRGGREERRRS-PDR 185
>12_01_0044 +
349798-350173,350745-350905,351527-351662,352110-352206,
352344-352444,352658-352821,353461-353582,353667-353718
Length = 402
Score = 27.9 bits (59), Expect = 7.1
Identities = 13/36 (36%), Positives = 18/36 (50%), Gaps = 1/36 (2%)
Frame = -3
Query: 229 PALIASQWYDARCREAPAIY-ARSSSEPYAWERKAH 125
P+ A +W ARCR PA+ E W R+A+
Sbjct: 37 PSTAAPRWRPARCRGKPAVEDVVHDDEEETWRREAN 72
>05_05_0368 + 24449793-24451199,24451867-24451927,24452256-24452710
Length = 640
Score = 27.5 bits (58), Expect = 9.4
Identities = 11/25 (44%), Positives = 14/25 (56%), Gaps = 2/25 (8%)
Frame = -3
Query: 493 ASPSLISP--PRHRQCTQWWWRCLA 425
A P+ P + RQC WW RC+A
Sbjct: 538 ARPATAKPGTAQWRQCVAWWRRCMA 562
>02_05_0844 -
32144417-32144764,32145588-32145686,32146218-32146410,
32147049-32147107,32147189-32147263,32147557-32147670,
32147776-32147895,32148204-32148216,32148421-32148512,
32149078-32149164,32149254-32149328,32149630-32149680,
32149852-32149947,32150135-32150221,32150312-32150368,
32150475-32150600,32150709-32150949,32151028-32151114,
32151260-32151637,32152847-32153187
Length = 912
Score = 27.5 bits (58), Expect = 9.4
Identities = 15/47 (31%), Positives = 26/47 (55%)
Frame = +1
Query: 235 LIIGKPAPIVEWLKNGEPIEEYEEATNEVILTDPESFAKIVSKLVVV 375
L+ + I++WLK + E+T +L+ ESF K +S+L V+
Sbjct: 305 LVSNWESEIIKWLKGRVQLLALCESTRADVLSGIESFLKPLSRLQVL 351
>01_06_1714 -
39368509-39369153,39369607-39369850,39369995-39370191,
39370607-39370708,39370826-39371026,39371138-39371381,
39371813-39371983,39372450-39372751
Length = 701
Score = 27.5 bits (58), Expect = 9.4
Identities = 18/52 (34%), Positives = 24/52 (46%)
Frame = +1
Query: 124 SAPSVPKRRVLKNFAHISQAPPDTVHHTTGSQLELECLIIGKPAPIVEWLKN 279
+A +P R L+ H Q P + H TG I KPA +V WLK+
Sbjct: 71 AADQLPSYRGLR-IGHTLQVPSYSRHPRTGDWYPA----INKPAGVVHWLKH 117
>01_05_0239 - 19712962-19713381
Length = 139
Score = 27.5 bits (58), Expect = 9.4
Identities = 11/33 (33%), Positives = 16/33 (48%), Gaps = 1/33 (3%)
Frame = -3
Query: 202 DARCREAPAI-YARSSSEPYAWERKAHWIGCCP 107
+A CR + R S P AWE+ ++ CP
Sbjct: 54 NAHCRRISGFQHTREESIPEAWEQLQEYVAACP 86
>01_03_0237 + 14068713-14069315,14069654-14069914
Length = 287
Score = 27.5 bits (58), Expect = 9.4
Identities = 11/24 (45%), Positives = 16/24 (66%)
Frame = +3
Query: 240 HRETSADRRMAEERGTDRGIRRGN 311
HR+ + D + EERG RG +RG+
Sbjct: 51 HRQRAVDAGVEEERGKRRGRKRGS 74
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.315 0.132 0.391
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,893,113
Number of Sequences: 37544
Number of extensions: 379531
Number of successful extensions: 1371
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 1330
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1371
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1561213104
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)
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