Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P16_F_J13
(586 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC1235.14 |ght5||hexose transporter Ght5 |Schizosaccharomyces ... 27 1.5
SPBC713.06 |adl1|lig3|DNA ligase |Schizosaccharomyces pombe|chr ... 27 2.0
SPAC9.11 |||sequence orphan|Schizosaccharomyces pombe|chr 1|||Ma... 27 2.0
SPBC17D11.04c |||histone acetyltransferase complex subunit Nto1 ... 27 2.7
SPBPJ4664.04 |||coatomer alpha subunit |Schizosaccharomyces pomb... 25 6.2
SPBC2F12.05c |||sterol binding ankyrin repeat protein|Schizosacc... 25 6.2
SPAC589.03c |||sequence orphan|Schizosaccharomyces pombe|chr 1||... 25 6.2
SPAC20G8.09c |||N-acetyltransferase Nat10 |Schizosaccharomyces p... 25 8.1
SPAC1A6.07 |||sequence orphan|Schizosaccharomyces pombe|chr 1|||... 25 8.1
SPAC56E4.04c |cut6||acetyl-CoA carboxylase|Schizosaccharomyces p... 25 8.1
SPBC1347.01c |rev1|SPBC215.16c|deoxycytidyl transferase Rev1 |Sc... 25 8.1
SPAC24H6.09 |gef1||RhoGEF Gef1|Schizosaccharomyces pombe|chr 1||... 25 8.1
>SPCC1235.14 |ght5||hexose transporter Ght5 |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 546
Score = 27.5 bits (58), Expect = 1.5
Identities = 14/65 (21%), Positives = 33/65 (50%), Gaps = 2/65 (3%)
Frame = -3
Query: 500 GVIEVLQFVIQISDKFSELIQESFGQGTVLQELSRHVLQQS--YGVFLASQVLDRVQVTE 327
G+ + F + +D+++ + +S+ + Q L ++ +G FL+S ++DR+
Sbjct: 29 GITNMRDFQSRFADRYNP-VTDSYSYSSARQGLITGMVNVGSFFGCFLSSPLMDRIGKRT 87
Query: 326 DIPYW 312
I +W
Sbjct: 88 SIMFW 92
>SPBC713.06 |adl1|lig3|DNA ligase |Schizosaccharomyces pombe|chr
2|||Manual
Length = 774
Score = 27.1 bits (57), Expect = 2.0
Identities = 15/43 (34%), Positives = 23/43 (53%), Gaps = 4/43 (9%)
Frame = +3
Query: 126 YDDKNYKLTEDPNMKNPLITNH----SPYGYVLKIMNSIDSQN 242
+ + +LT+ PN L+T+H S Y Y LK+ DS+N
Sbjct: 33 FSKREAQLTDTPNK---LLTDHDQSASDYAYALKLQQLFDSEN 72
>SPAC9.11 |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 328
Score = 27.1 bits (57), Expect = 2.0
Identities = 19/53 (35%), Positives = 28/53 (52%), Gaps = 1/53 (1%)
Frame = +3
Query: 333 HLHSIEDLGGKKHAVRL-LEYVPGELLKNCPLSEALLYQLGEFVANLDNKLQN 488
HL +E + V+L L+Y L K ++ LL Q E ++NL +KLQN
Sbjct: 272 HLSRLEKIRELLTFVQLELKYYVEPLKKELQETKTLLAQKEEEISNLKDKLQN 324
>SPBC17D11.04c |||histone acetyltransferase complex subunit Nto1
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 767
Score = 26.6 bits (56), Expect = 2.7
Identities = 14/43 (32%), Positives = 23/43 (53%)
Frame = +3
Query: 150 TEDPNMKNPLITNHSPYGYVLKIMNSIDSQNVGVVEAQNEIMN 278
T+ +++ L+T S YVLK + + +NV V Q E +N
Sbjct: 50 TQYAGLRDSLVTYKSENSYVLKALLNAKIENVKPVGVQTENIN 92
>SPBPJ4664.04 |||coatomer alpha subunit |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1207
Score = 25.4 bits (53), Expect = 6.2
Identities = 17/67 (25%), Positives = 30/67 (44%), Gaps = 2/67 (2%)
Frame = +3
Query: 51 DHEQVKLLAER--LYGISVLDLTELNGYDDKNYKLTEDPNMKNPLITNHSPYGYVLKIMN 224
D+EQV L + L G +++ + GY + + EDP+ + L L++
Sbjct: 614 DYEQVLHLIQNSNLVGQAIIAYLQKKGYPEIALQFVEDPSTRFELALECGNLETALELAR 673
Query: 225 SIDSQNV 245
+ID V
Sbjct: 674 TIDRPEV 680
>SPBC2F12.05c |||sterol binding ankyrin repeat
protein|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1310
Score = 25.4 bits (53), Expect = 6.2
Identities = 10/22 (45%), Positives = 13/22 (59%)
Frame = -3
Query: 362 ASQVLDRVQVTEDIPYWLGTGH 297
A +V VQ T+D P W+ GH
Sbjct: 1143 AHEVKGSVQSTDDTPKWMVNGH 1164
>SPAC589.03c |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 168
Score = 25.4 bits (53), Expect = 6.2
Identities = 10/26 (38%), Positives = 17/26 (65%)
Frame = +3
Query: 327 FGHLHSIEDLGGKKHAVRLLEYVPGE 404
+G LH I++LGG + + L+E V +
Sbjct: 71 YGLLHDIKELGGTEEDLELIEDVESD 96
>SPAC20G8.09c |||N-acetyltransferase Nat10 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1033
Score = 25.0 bits (52), Expect = 8.1
Identities = 13/42 (30%), Positives = 21/42 (50%)
Frame = +3
Query: 390 YVPGELLKNCPLSEALLYQLGEFVANLDNKLQNFNHSGLVSR 515
++ G LK L E + Y +G+ + NKL + + VSR
Sbjct: 449 HISGRTLKEISLDEPIRYAMGDRIELWLNKLLCLDAASYVSR 490
>SPAC1A6.07 |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 636
Score = 25.0 bits (52), Expect = 8.1
Identities = 12/33 (36%), Positives = 16/33 (48%)
Frame = +2
Query: 35 YPSDNRPRAGEATGRASLRDIRAGPDRAERLRR 133
YP+ P A R +LRD A P+ LR+
Sbjct: 539 YPAPPVPSVNNAGARLTLRDSGAAPEATYSLRQ 571
>SPAC56E4.04c |cut6||acetyl-CoA carboxylase|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 2280
Score = 25.0 bits (52), Expect = 8.1
Identities = 12/37 (32%), Positives = 17/37 (45%)
Frame = +3
Query: 318 RNIFGHLHSIEDLGGKKHAVRLLEYVPGELLKNCPLS 428
RN HL S +D G V + Y+P + P+S
Sbjct: 1826 RNGISHLTSQDDFDGISKIVNWISYIPDKRNNPVPIS 1862
>SPBC1347.01c |rev1|SPBC215.16c|deoxycytidyl transferase Rev1
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 935
Score = 25.0 bits (52), Expect = 8.1
Identities = 14/46 (30%), Positives = 25/46 (54%)
Frame = +3
Query: 51 DHEQVKLLAERLYGISVLDLTELNGYDDKNYKLTEDPNMKNPLITN 188
D+E+ K + G + DL+ L+ NY+L ++PN++N N
Sbjct: 184 DNEKDKTKESKAKGF-LDDLSGLSASSLHNYQLLKNPNVRNSTTQN 228
>SPAC24H6.09 |gef1||RhoGEF Gef1|Schizosaccharomyces pombe|chr
1|||Manual
Length = 753
Score = 25.0 bits (52), Expect = 8.1
Identities = 14/40 (35%), Positives = 20/40 (50%)
Frame = -1
Query: 460 TNSPS*YRRASDRGQFFKSSPGTYSSSLTACFLPPRSSIE 341
T+S RR S G F + SS+ T+ +LP S+ E
Sbjct: 183 TSSNGTSRRVSGLGSFMAQNSSETSSNRTSAYLPGSSTDE 222
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,131,931
Number of Sequences: 5004
Number of extensions: 40898
Number of successful extensions: 152
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 146
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 152
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 252150250
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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