Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P16_F_J13
(586 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
04_04_0333 - 24481029-24481109,24481185-24481253,24481785-244818... 30 1.2
11_01_0471 - 3648871-3649078,3649841-3649926,3650111-3650155,365... 29 2.7
08_02_0098 - 12324664-12324822,12325430-12325543,12325649-123259... 29 2.7
03_02_0860 - 11864510-11864732,11864867-11865191,11866213-11867779 29 2.7
02_04_0036 + 19097693-19098106 29 3.6
07_03_0524 - 19037638-19038294 28 6.3
04_04_1251 + 32083164-32083284,32083448-32083614,32083719-320837... 28 6.3
03_02_0025 + 5084003-5084303,5084449-5084639,5084793-5084873,508... 28 6.3
09_04_0006 - 13632902-13633026,13634013-13634179,13634286-136344... 27 8.3
07_03_0011 + 12370624-12370684,12372573-12372718,12372793-123731... 27 8.3
07_01_1103 + 10141766-10143583 27 8.3
>04_04_0333 -
24481029-24481109,24481185-24481253,24481785-24481853,
24481923-24481944,24482302-24482393,24482688-24482803,
24482899-24483042,24483287-24483476
Length = 260
Score = 30.3 bits (65), Expect = 1.2
Identities = 20/62 (32%), Positives = 31/62 (50%), Gaps = 2/62 (3%)
Frame = +3
Query: 24 PGQVIRPIIDHEQVKLLAERLYGISVLDLTELN--GYDDKNYKLTEDPNMKNPLITNHSP 197
PG + +++ VK+ RL +SVLD L+ YD + K E + +PL N +P
Sbjct: 111 PGMLDHIMVETTGVKVALNRLAVVSVLDAHTLSVMPYDPSSMKSIEHAIISSPLGINPTP 170
Query: 198 YG 203
G
Sbjct: 171 DG 172
>11_01_0471 -
3648871-3649078,3649841-3649926,3650111-3650155,
3650306-3650815,3651700-3653757
Length = 968
Score = 29.1 bits (62), Expect = 2.7
Identities = 10/29 (34%), Positives = 18/29 (62%)
Frame = +1
Query: 412 RTVPCPKLSCISSENLSLIWITNCRTSIT 498
R V C +L C + +++ +W+ +CR S T
Sbjct: 620 RIVLCVRLLCNTGDDVRKVWLQSCRQSFT 648
>08_02_0098 -
12324664-12324822,12325430-12325543,12325649-12325921,
12326124-12326354,12326444-12326594,12326680-12326759,
12326839-12326913,12326992-12327093,12328000-12328121,
12329726-12329791,12330158-12330201,12330850-12330898,
12330967-12331087,12334631-12334735
Length = 563
Score = 29.1 bits (62), Expect = 2.7
Identities = 22/84 (26%), Positives = 39/84 (46%), Gaps = 5/84 (5%)
Frame = +3
Query: 90 GISVLDLTELNGYDDKNYKLTEDPNMKNPLITNHSPYGYVLKIMNSIDSQNVGVVEAQ-- 263
G+ L+ T NG +K Y +P + P++T S + I++S S +E Q
Sbjct: 92 GLCQLEFT--NGQVEKRYLSRTEPKLPVPIVTCESALWRGVSILDSDSSGITMELELQWD 149
Query: 264 ---NEIMNFLATRSVTCPKPVRNI 326
N +++ T ++ P V+NI
Sbjct: 150 GNPNIVLDIQTTLGISLPVQVKNI 173
>03_02_0860 - 11864510-11864732,11864867-11865191,11866213-11867779
Length = 704
Score = 29.1 bits (62), Expect = 2.7
Identities = 25/75 (33%), Positives = 39/75 (52%), Gaps = 1/75 (1%)
Frame = +3
Query: 297 VTCPKPVRNIFGHLHSIEDLGGKKHAVRLLEYVPGELLKNCPLSEALLYQLGEFV-ANLD 473
+ C KP RNI+G L ++ DL G++ AV L +L+ C L + +G V D
Sbjct: 280 IKCEKPNRNIYGFLATV-DLDGRR-AVSL--GTSNIMLRGCELKNT-AWAIGVAVYTGRD 334
Query: 474 NKLQNFNHSGLVSRQ 518
K+ N+SG S++
Sbjct: 335 TKVM-LNNSGAPSKR 348
>02_04_0036 + 19097693-19098106
Length = 137
Score = 28.7 bits (61), Expect = 3.6
Identities = 16/50 (32%), Positives = 25/50 (50%), Gaps = 2/50 (4%)
Frame = +3
Query: 309 KPVRNIFG--HLHSIEDLGGKKHAVRLLEYVPGELLKNCPLSEALLYQLG 452
+PV +F H HS+ GG++ A RL+ + G + +A QLG
Sbjct: 68 RPVEGLFRYCHRHSVSAAGGERRAFRLVRFA-GAASEEIRRGDATFQQLG 116
>07_03_0524 - 19037638-19038294
Length = 218
Score = 27.9 bits (59), Expect = 6.3
Identities = 16/45 (35%), Positives = 21/45 (46%)
Frame = -2
Query: 420 DSSSRALPARTPAVLRRVSCLPGPR*SAGDRRYSVLAWDRSRSEW 286
D++ R P A RR S LPG AG + A +R R+ W
Sbjct: 172 DAAVRRAPGHDHARSRRTSVLPGRPTVAGKSLRLLTAEERKRASW 216
>04_04_1251 +
32083164-32083284,32083448-32083614,32083719-32083721,
32084323-32084532,32084818-32084977,32085080-32085314,
32085405-32085555
Length = 348
Score = 27.9 bits (59), Expect = 6.3
Identities = 16/45 (35%), Positives = 22/45 (48%), Gaps = 1/45 (2%)
Frame = +2
Query: 284 GHSLRDLSQASTEYLRSPALYRGPGRQETRRKTAGVR-AGRALEE 415
GH L + S + +YL SPA PG+ + K + A R EE
Sbjct: 142 GHVLDESSWSDVDYLSSPANKTSPGKAYSLSKVLSEKEASRVAEE 186
>03_02_0025 +
5084003-5084303,5084449-5084639,5084793-5084873,
5084972-5085319,5085409-5086293
Length = 601
Score = 27.9 bits (59), Expect = 6.3
Identities = 11/34 (32%), Positives = 17/34 (50%)
Frame = -3
Query: 302 GHGASGQKIHNLILGLNNADVLRVNRIHDLEHVA 201
GHG G + N + + DVL V R H + ++
Sbjct: 359 GHGGGGVRCKNSLFRVKEGDVLVVPRFHPMAQIS 392
>09_04_0006 -
13632902-13633026,13634013-13634179,13634286-13634437,
13634564-13634672,13635096-13635280,13635372-13635687,
13635796-13635903,13635994-13636139,13636223-13636237
Length = 440
Score = 27.5 bits (58), Expect = 8.3
Identities = 13/37 (35%), Positives = 22/37 (59%)
Frame = +3
Query: 39 RPIIDHEQVKLLAERLYGISVLDLTELNGYDDKNYKL 149
+ I+DH+QV LL + Y IS+ + +DKN+ +
Sbjct: 251 KKILDHDQVVLLGDLNYRISLEEAETRLLVEDKNWSI 287
>07_03_0011 +
12370624-12370684,12372573-12372718,12372793-12373129,
12374323-12374452,12375346-12375406,12375572-12375618,
12376873-12376950,12377195-12377345,12377495-12377558,
12377735-12377893,12378007-12378128,12378952-12378981,
12379050-12379124,12379563-12379644,12379809-12379938,
12381417-12382164,12382833-12383054,12383127-12383276,
12384851-12384904,12384985-12385058,12386130-12386204,
12386365-12386584
Length = 1071
Score = 27.5 bits (58), Expect = 8.3
Identities = 13/38 (34%), Positives = 20/38 (52%), Gaps = 1/38 (2%)
Frame = +3
Query: 309 KPVRNIFGHLHSIEDLGGKKHAVRLLEYVP-GELLKNC 419
+PV++ GH HS K V +++ P G LL +C
Sbjct: 443 RPVKSFSGHQHSSPAFSKKNSEVNAIKWDPTGSLLASC 480
>07_01_1103 + 10141766-10143583
Length = 605
Score = 27.5 bits (58), Expect = 8.3
Identities = 17/46 (36%), Positives = 25/46 (54%)
Frame = -1
Query: 424 RGQFFKSSPGTYSSSLTACFLPPRSSIECR*PKIFRTGLGQVTERV 287
RG+ S GT S+ L C LPP+++ P+I TG+ + E V
Sbjct: 248 RGRAAPQSAGTESALLEECVLPPQTA-----PQITGTGVALLDEVV 288
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,298,126
Number of Sequences: 37544
Number of extensions: 280216
Number of successful extensions: 1007
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 990
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1007
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1376330256
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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