Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P16_F_J13
(586 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
BC132753-1|AAI32754.1| 226|Homo sapiens LOC123688 protein protein. 96 9e-20
AK126453-1|BAC86556.1| 172|Homo sapiens protein ( Homo sapiens ... 77 5e-14
Y00762-1|CAA68731.1| 457|Homo sapiens protein ( Human mRNA for ... 31 3.0
X02502-1|CAA26344.1| 457|Homo sapiens acetylcholine receptor pr... 31 3.0
S77094-1|AAD14247.1| 457|Homo sapiens nicotinic acetylcholine r... 31 3.0
BC006314-1|AAH06314.1| 269|Homo sapiens CHRNA1 protein protein. 31 3.0
AC018890-1|AAY14687.1| 457|Homo sapiens unknown protein. 31 3.0
BX538319-1|CAD98093.1| 1290|Homo sapiens hypothetical protein pr... 30 5.2
BC115022-1|AAI15023.1| 1551|Homo sapiens ROBO1 protein protein. 30 5.2
BC115020-1|AAI15021.1| 1606|Homo sapiens ROBO1 protein protein. 30 5.2
BC112336-1|AAI12337.1| 1607|Homo sapiens ROBO1 protein protein. 30 5.2
AF040990-1|AAC39575.1| 1651|Homo sapiens roundabout 1 protein. 30 5.2
AF391100-1|AAL14103.1| 1657|Homo sapiens alsin protein. 30 6.9
AC007279-1|AAY15058.1| 1598|Homo sapiens unknown protein. 30 6.9
AB053305-1|BAB69014.1| 1657|Homo sapiens ALS2 protein. 30 6.9
AB046783-1|BAB13389.2| 1658|Homo sapiens KIAA1563 protein protein. 30 6.9
AK001237-1|BAA91573.1| 589|Homo sapiens protein ( Homo sapiens ... 29 9.1
>BC132753-1|AAI32754.1| 226|Homo sapiens LOC123688 protein protein.
Length = 226
Score = 95.9 bits (228), Expect = 9e-20
Identities = 62/185 (33%), Positives = 88/185 (47%), Gaps = 7/185 (3%)
Frame = +3
Query: 39 RPIIDHEQVKLLAERLYGISVLDLTELNGYDDKNYKLTEDPNMKNPLITNHSPYGYVLKI 218
+P EQ L E ++G+ V + L YDD+N+ + T P YVLKI
Sbjct: 14 KPTFSEEQASALVESVFGLKVSKVRPLPSYDDQNFHVYVSK-------TKDGPTEYVLKI 66
Query: 219 MNSIDSQNVGVVEAQNEIMNFLATRSVTCPKPVRNIFGHLHSIE--DLGG--KKHAVRLL 386
N+ S+N ++E QN I+ FL + S+ D G K + VRLL
Sbjct: 67 SNTKASKNPDLIEVQNHIIMFLKAAGFPTASVCHTKGDNTASLVSVDSGSEIKSYLVRLL 126
Query: 387 EYVPGELLKNCPLSEALLYQLGEFVANLDNKLQNFNH---SGLVSRQHMWMLSMVPELEK 557
Y+PG + P+S LLY++G+ A LD LQ F+H S L +W L VP LEK
Sbjct: 127 TYLPGRPIAELPVSPQLLYEIGKLAAKLDKTLQRFHHPKLSSLHRENFIWNLKNVPLLEK 186
Query: 558 FKYVI 572
+ Y +
Sbjct: 187 YLYAL 191
>AK126453-1|BAC86556.1| 172|Homo sapiens protein ( Homo sapiens
cDNA FLJ44489 fis, clone UTERU2035114. ).
Length = 172
Score = 77.0 bits (181), Expect = 5e-14
Identities = 50/153 (32%), Positives = 72/153 (47%), Gaps = 4/153 (2%)
Frame = +3
Query: 39 RPIIDHEQVKLLAERLYGISVLDLTELNGYDDKNYKLTEDPNMKNPLITNHSPYGYVLKI 218
+P EQ L E ++G+ V + L YDD+N+ + T P YVLKI
Sbjct: 14 KPTFSEEQASALVESVFGLKVSKVRPLPSYDDQNFHVYVSK-------TKDGPTEYVLKI 66
Query: 219 MNSIDSQNVGVVEAQNEIMNFLATRSVTCPKPVRNIFGHLHSIE--DLGG--KKHAVRLL 386
N+ S+N ++E QN I+ FL + S+ D G K + VRLL
Sbjct: 67 SNTKASKNPDLIEVQNHIIMFLKAAGFPTASVCHTKGDNTASLVSVDSGSEIKSYLVRLL 126
Query: 387 EYVPGELLKNCPLSEALLYQLGEFVANLDNKLQ 485
Y+PG + P+S LLY++G+ A LD LQ
Sbjct: 127 TYLPGRPIAELPVSPQLLYEIGKLAAKLDKTLQ 159
>Y00762-1|CAA68731.1| 457|Homo sapiens protein ( Human mRNA for
muscle acetylcholine receptor alpha-subunit. ).
Length = 457
Score = 31.1 bits (67), Expect = 3.0
Identities = 23/71 (32%), Positives = 34/71 (47%)
Frame = +3
Query: 6 AXLLLEPGQVIRPIIDHEQVKLLAERLYGISVLDLTELNGYDDKNYKLTEDPNMKNPLIT 185
A L + V+RP+ DH QV + L I ++++ E+N N +L + N L
Sbjct: 29 AKLFKDYSSVVRPVEDHRQVVEVTVGLQLIQLINVDEVNQIVTTNVRLKQQWVDYN-LKW 87
Query: 186 NHSPYGYVLKI 218
N YG V KI
Sbjct: 88 NPDDYGGVKKI 98
>X02502-1|CAA26344.1| 457|Homo sapiens acetylcholine receptor
protein.
Length = 457
Score = 31.1 bits (67), Expect = 3.0
Identities = 23/71 (32%), Positives = 34/71 (47%)
Frame = +3
Query: 6 AXLLLEPGQVIRPIIDHEQVKLLAERLYGISVLDLTELNGYDDKNYKLTEDPNMKNPLIT 185
A L + V+RP+ DH QV + L I ++++ E+N N +L + N L
Sbjct: 29 AKLFKDYSSVVRPVEDHRQVVEVTVGLQLIQLINVDEVNQIVTTNVRLKQQWVDYN-LKW 87
Query: 186 NHSPYGYVLKI 218
N YG V KI
Sbjct: 88 NPDDYGGVKKI 98
>S77094-1|AAD14247.1| 457|Homo sapiens nicotinic acetylcholine
receptor alpha subunit|AChR protein.
Length = 457
Score = 31.1 bits (67), Expect = 3.0
Identities = 23/71 (32%), Positives = 34/71 (47%)
Frame = +3
Query: 6 AXLLLEPGQVIRPIIDHEQVKLLAERLYGISVLDLTELNGYDDKNYKLTEDPNMKNPLIT 185
A L + V+RP+ DH QV + L I ++++ E+N N +L + N L
Sbjct: 29 AKLFKDYSSVVRPVEDHRQVVEVTVGLQLIQLINVDEVNQIVTTNVRLKQQWVDYN-LKW 87
Query: 186 NHSPYGYVLKI 218
N YG V KI
Sbjct: 88 NPDDYGGVKKI 98
>BC006314-1|AAH06314.1| 269|Homo sapiens CHRNA1 protein protein.
Length = 269
Score = 31.1 bits (67), Expect = 3.0
Identities = 23/71 (32%), Positives = 34/71 (47%)
Frame = +3
Query: 6 AXLLLEPGQVIRPIIDHEQVKLLAERLYGISVLDLTELNGYDDKNYKLTEDPNMKNPLIT 185
A L + V+RP+ DH QV + L I ++++ E+N N +L + N L
Sbjct: 29 AKLFKDYSSVVRPVEDHRQVVEVTVGLQLIQLINVDEVNQIVTTNVRLKQQWVDYN-LKW 87
Query: 186 NHSPYGYVLKI 218
N YG V KI
Sbjct: 88 NPDDYGGVKKI 98
>AC018890-1|AAY14687.1| 457|Homo sapiens unknown protein.
Length = 457
Score = 31.1 bits (67), Expect = 3.0
Identities = 23/71 (32%), Positives = 34/71 (47%)
Frame = +3
Query: 6 AXLLLEPGQVIRPIIDHEQVKLLAERLYGISVLDLTELNGYDDKNYKLTEDPNMKNPLIT 185
A L + V+RP+ DH QV + L I ++++ E+N N +L + N L
Sbjct: 29 AKLFKDYSSVVRPVEDHRQVVEVTVGLQLIQLINVDEVNQIVTTNVRLKQQWVDYN-LKW 87
Query: 186 NHSPYGYVLKI 218
N YG V KI
Sbjct: 88 NPDDYGGVKKI 98
>BX538319-1|CAD98093.1| 1290|Homo sapiens hypothetical protein
protein.
Length = 1290
Score = 30.3 bits (65), Expect = 5.2
Identities = 16/53 (30%), Positives = 28/53 (52%)
Frame = -3
Query: 380 SYGVFLASQVLDRVQVTEDIPYWLGTGHGASGQKIHNLILGLNNADVLRVNRI 222
+YG+ SQ+ D V+ + +P G H +++ N +L L+N VL + I
Sbjct: 278 AYGISDPSQISDPVKTQDVLPTSQGVDHKQVQRELGNAVLHLHNPTVLSSSSI 330
>BC115022-1|AAI15023.1| 1551|Homo sapiens ROBO1 protein protein.
Length = 1551
Score = 30.3 bits (65), Expect = 5.2
Identities = 16/53 (30%), Positives = 28/53 (52%)
Frame = -3
Query: 380 SYGVFLASQVLDRVQVTEDIPYWLGTGHGASGQKIHNLILGLNNADVLRVNRI 222
+YG+ SQ+ D V+ + +P G H +++ N +L L+N VL + I
Sbjct: 603 AYGISDPSQISDPVKTQDVLPTSQGVDHKQVQRELGNAVLHLHNPTVLSSSSI 655
>BC115020-1|AAI15021.1| 1606|Homo sapiens ROBO1 protein protein.
Length = 1606
Score = 30.3 bits (65), Expect = 5.2
Identities = 16/53 (30%), Positives = 28/53 (52%)
Frame = -3
Query: 380 SYGVFLASQVLDRVQVTEDIPYWLGTGHGASGQKIHNLILGLNNADVLRVNRI 222
+YG+ SQ+ D V+ + +P G H +++ N +L L+N VL + I
Sbjct: 603 AYGISDPSQISDPVKTQDVLPTSQGVDHKQVQRELGNAVLHLHNPTVLSPSSI 655
>BC112336-1|AAI12337.1| 1607|Homo sapiens ROBO1 protein protein.
Length = 1607
Score = 30.3 bits (65), Expect = 5.2
Identities = 16/53 (30%), Positives = 28/53 (52%)
Frame = -3
Query: 380 SYGVFLASQVLDRVQVTEDIPYWLGTGHGASGQKIHNLILGLNNADVLRVNRI 222
+YG+ SQ+ D V+ + +P G H +++ N +L L+N VL + I
Sbjct: 603 AYGISDPSQISDPVKTQDVLPTSQGVDHKQVQRELGNAVLHLHNPTVLSSSSI 655
>AF040990-1|AAC39575.1| 1651|Homo sapiens roundabout 1 protein.
Length = 1651
Score = 30.3 bits (65), Expect = 5.2
Identities = 16/53 (30%), Positives = 28/53 (52%)
Frame = -3
Query: 380 SYGVFLASQVLDRVQVTEDIPYWLGTGHGASGQKIHNLILGLNNADVLRVNRI 222
+YG+ SQ+ D V+ + +P G H +++ N +L L+N VL + I
Sbjct: 639 AYGISDPSQISDPVKTQDVLPTSQGVDHKQVQRELGNAVLHLHNPTVLSSSSI 691
>AF391100-1|AAL14103.1| 1657|Homo sapiens alsin protein.
Length = 1657
Score = 29.9 bits (64), Expect = 6.9
Identities = 13/30 (43%), Positives = 18/30 (60%)
Frame = -3
Query: 539 HREHPHVLSADQTGVIEVLQFVIQISDKFS 450
HR+ P +LS QT +E L+F+ Q FS
Sbjct: 1332 HRDSPEILSRSQTQTLESLEFIPQHVGAFS 1361
>AC007279-1|AAY15058.1| 1598|Homo sapiens unknown protein.
Length = 1598
Score = 29.9 bits (64), Expect = 6.9
Identities = 13/30 (43%), Positives = 18/30 (60%)
Frame = -3
Query: 539 HREHPHVLSADQTGVIEVLQFVIQISDKFS 450
HR+ P +LS QT +E L+F+ Q FS
Sbjct: 1273 HRDSPEILSRSQTQTLESLEFIPQHVGAFS 1302
>AB053305-1|BAB69014.1| 1657|Homo sapiens ALS2 protein.
Length = 1657
Score = 29.9 bits (64), Expect = 6.9
Identities = 13/30 (43%), Positives = 18/30 (60%)
Frame = -3
Query: 539 HREHPHVLSADQTGVIEVLQFVIQISDKFS 450
HR+ P +LS QT +E L+F+ Q FS
Sbjct: 1332 HRDSPEILSRSQTQTLESLEFIPQHVGAFS 1361
>AB046783-1|BAB13389.2| 1658|Homo sapiens KIAA1563 protein protein.
Length = 1658
Score = 29.9 bits (64), Expect = 6.9
Identities = 13/30 (43%), Positives = 18/30 (60%)
Frame = -3
Query: 539 HREHPHVLSADQTGVIEVLQFVIQISDKFS 450
HR+ P +LS QT +E L+F+ Q FS
Sbjct: 1333 HRDSPEILSRSQTQTLESLEFIPQHVGAFS 1362
>AK001237-1|BAA91573.1| 589|Homo sapiens protein ( Homo sapiens
cDNA FLJ10375 fis, clone NT2RM2001950. ).
Length = 589
Score = 29.5 bits (63), Expect = 9.1
Identities = 29/97 (29%), Positives = 49/97 (50%), Gaps = 1/97 (1%)
Frame = -3
Query: 581 RVLDHILEFLQLWDHREHPHVLSADQTGVIEVLQFVIQISDKFSELIQESFGQGTVLQEL 402
R+ + EFL W E+ + SA Q +I + V + F+ L +F VL+++
Sbjct: 304 RLYRYAAEFLTSW---ENHRLESAYQNHLI-LKVLVFNFLNCFASLFYIAF----VLKDM 355
Query: 401 SRHVLQQSYGVFL-ASQVLDRVQVTEDIPYWLGTGHG 294
+L+QS L SQ+L+++ + +PYWL HG
Sbjct: 356 K--LLRQSLATLLITSQILNQI-MESFLPYWLQRKHG 389
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 76,870,691
Number of Sequences: 237096
Number of extensions: 1577502
Number of successful extensions: 4050
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 3877
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4047
length of database: 76,859,062
effective HSP length: 86
effective length of database: 56,468,806
effective search space used: 6098631048
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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