Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P16_F_J13
         (586 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY463910-1|AAR24352.1|  843|Apis mellifera metabotropic glutamat...    26   0.24 
AB161181-1|BAD08343.1|  933|Apis mellifera metabotropic glutamat...    26   0.24 
DQ026037-1|AAY87896.1|  431|Apis mellifera nicotinic acetylcholi...    24   1.3  
AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul...    22   5.1  
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A...    22   5.1  
AY242387-1|AAO72539.2|  693|Apis mellifera prophenoloxidase prot...    21   6.7  
AB267886-1|BAF46356.1|  567|Apis mellifera ecdysteroid receptor ...    21   6.7  

>AY463910-1|AAR24352.1|  843|Apis mellifera metabotropic glutamate
           receptor 1 protein.
          Length = 843

 Score = 26.2 bits (55), Expect = 0.24
 Identities = 17/49 (34%), Positives = 24/49 (48%), Gaps = 5/49 (10%)
 Frame = +3

Query: 60  QVKL---LAERLYGISVLDLTELN--GYDDKNYKLTEDPNMKNPLITNH 191
           Q+KL   L E   G   ++L   N  G+DD    LT D N +NP  + +
Sbjct: 236 QIKLVEGLEEEAEGAITVELQSENIPGFDDYMASLTPDTNRRNPWFSEY 284


>AB161181-1|BAD08343.1|  933|Apis mellifera metabotropic glutamate
           receptor protein.
          Length = 933

 Score = 26.2 bits (55), Expect = 0.24
 Identities = 17/49 (34%), Positives = 24/49 (48%), Gaps = 5/49 (10%)
 Frame = +3

Query: 60  QVKL---LAERLYGISVLDLTELN--GYDDKNYKLTEDPNMKNPLITNH 191
           Q+KL   L E   G   ++L   N  G+DD    LT D N +NP  + +
Sbjct: 326 QIKLVEGLEEEAEGAITVELQSENIPGFDDYMASLTPDTNRRNPWFSEY 374


>DQ026037-1|AAY87896.1|  431|Apis mellifera nicotinic acetylcholine
           receptor alpha9subunit protein.
          Length = 431

 Score = 23.8 bits (49), Expect = 1.3
 Identities = 16/89 (17%), Positives = 39/89 (43%), Gaps = 1/89 (1%)
 Frame = -3

Query: 566 ILEFLQLW-DHREHPHVLSADQTGVIEVLQFVIQISDKFSELIQESFGQGTVLQELSRHV 390
           +L    LW D R    +++A     + ++  ++ +SD   +L   S     +L      +
Sbjct: 268 LLTLTVLWLDSRSTERMIAAS----VNLICHILCMSDLHWQLPHNSTNPPNILLYYRDSL 323

Query: 389 LQQSYGVFLASQVLDRVQVTEDIPYWLGT 303
               + + L + +    +++ ++PYW+ T
Sbjct: 324 ALSVFALILTALLRKMQEMSIEVPYWIST 352


>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
           AbsCAM-Ig7B protein.
          Length = 1923

 Score = 21.8 bits (44), Expect = 5.1
 Identities = 8/53 (15%), Positives = 27/53 (50%)
 Frame = +3

Query: 393 VPGELLKNCPLSEALLYQLGEFVANLDNKLQNFNHSGLVSRQHMWMLSMVPEL 551
           V G+++ +  +S  ++   GE+    +N+     H+  ++   +  + ++P++
Sbjct: 476 VHGDVISHVNISHVMVEDGGEYSCMAENRAGKVTHAARLNVYGLPYIRLIPKV 528


>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
           AbsCAM-Ig7A protein.
          Length = 1919

 Score = 21.8 bits (44), Expect = 5.1
 Identities = 8/53 (15%), Positives = 27/53 (50%)
 Frame = +3

Query: 393 VPGELLKNCPLSEALLYQLGEFVANLDNKLQNFNHSGLVSRQHMWMLSMVPEL 551
           V G+++ +  +S  ++   GE+    +N+     H+  ++   +  + ++P++
Sbjct: 476 VHGDVISHVNISHVMVEDGGEYSCMAENRAGKVTHAARLNVYGLPYIRLIPKV 528


>AY242387-1|AAO72539.2|  693|Apis mellifera prophenoloxidase
           protein.
          Length = 693

 Score = 21.4 bits (43), Expect = 6.7
 Identities = 8/13 (61%), Positives = 9/13 (69%)
 Frame = +2

Query: 35  YPSDNRPRAGEAT 73
           YP D +PRAG  T
Sbjct: 643 YPFDRQPRAGVET 655


>AB267886-1|BAF46356.1|  567|Apis mellifera ecdysteroid receptor A
           isoform protein.
          Length = 567

 Score = 21.4 bits (43), Expect = 6.7
 Identities = 12/31 (38%), Positives = 16/31 (51%)
 Frame = +3

Query: 177 LITNHSPYGYVLKIMNSIDSQNVGVVEAQNE 269
           ++T  SPYGYV  I    +     +V  QNE
Sbjct: 318 ILTPVSPYGYVKPISPEQEELIHRLVYFQNE 348


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 141,636
Number of Sequences: 438
Number of extensions: 3213
Number of successful extensions: 8
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 16993167
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)