Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P16_F_J12
(707 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
02_05_0955 - 33056171-33057256 34 0.096
01_06_0036 + 25786530-25786756,25788000-25788076,25788538-257886... 33 0.17
11_01_0727 - 6010537-6010548,6011029-6011606,6011709-6011774,601... 33 0.29
09_04_0239 + 15954995-15956242 32 0.51
07_03_0503 + 18839863-18841209 32 0.51
09_04_0413 + 17372852-17373787 31 1.2
12_01_0913 + 8882193-8883510,8887633-8887865,8889619-8889871,889... 30 1.6
09_04_0240 + 15958110-15958305,15959586-15960763 30 1.6
09_04_0421 + 17417851-17418840 30 2.1
07_03_0659 + 20395422-20396765 30 2.1
01_01_0379 - 2956396-2957409 30 2.1
08_02_0997 + 23409932-23410894 29 2.7
05_07_0219 - 28474661-28475146,28475979-28476644 29 2.7
06_01_1196 + 10289708-10289823,10290828-10291541,10291614-102920... 29 3.6
09_04_0410 + 17362751-17363698 29 4.8
09_04_0409 + 17359459-17360622 28 6.3
06_01_0781 + 5846501-5847490 28 6.3
01_06_1701 - 39290537-39291077,39292110-39292801 28 6.3
>02_05_0955 - 33056171-33057256
Length = 361
Score = 34.3 bits (75), Expect = 0.096
Identities = 19/49 (38%), Positives = 27/49 (55%), Gaps = 5/49 (10%)
Frame = +3
Query: 393 GDERGCPVVFFVHGGNYKSGSASA-----YGGQHLTQKDTILVTAQYRL 524
GD R P+V +VHGG + +GSASA Y + ++V+ YRL
Sbjct: 85 GDGRRLPLVVYVHGGAFCTGSASARMFHDYAESLSARAAAVVVSVDYRL 133
>01_06_0036 +
25786530-25786756,25788000-25788076,25788538-25788625,
25788706-25788786,25788866-25788940,25789048-25789149,
25789589-25789726,25791559-25791585,25791696-25791786,
25792423-25792584
Length = 355
Score = 33.5 bits (73), Expect = 0.17
Identities = 29/99 (29%), Positives = 46/99 (46%), Gaps = 3/99 (3%)
Frame = +3
Query: 366 LNVFAPKMPGDERGCPVVFFVHGGNYKSGSASAYG---GQHLTQKDTILVTAQYRLGSLG 536
L+++ PK R CPVV FV GG + G A+G G+ L ++ I+ YR G
Sbjct: 132 LDLYIPK--DINRPCPVVAFVTGGAWIIG-YKAWGSLLGRRLAERGIIVACIDYRNFPQG 188
Query: 537 YLSTDERDAAGNVGLFDLHAVMAXIQDYITFFGGDPTRV 653
+ DA+ + + + + I +GGDP R+
Sbjct: 189 TIGDMVSDASQGI---------SYVCNNIASYGGDPNRI 218
>11_01_0727 -
6010537-6010548,6011029-6011606,6011709-6011774,
6011867-6011964,6013238-6013608
Length = 374
Score = 32.7 bits (71), Expect = 0.29
Identities = 14/33 (42%), Positives = 18/33 (54%)
Frame = +3
Query: 381 PKMPGDERGCPVVFFVHGGNYKSGSASAYGGQH 479
P PG +G P V +GGN + G AYGG +
Sbjct: 319 PTYPGSNQGAPGVNPGYGGNNRQGPGPAYGGDN 351
>09_04_0239 + 15954995-15956242
Length = 415
Score = 31.9 bits (69), Expect = 0.51
Identities = 18/46 (39%), Positives = 25/46 (54%), Gaps = 5/46 (10%)
Frame = +3
Query: 402 RGCPVVFFVHGGNYKSGSASA-----YGGQHLTQKDTILVTAQYRL 524
R P+V +VHGG + SGSASA Y + ++V+ YRL
Sbjct: 92 RRLPLVVYVHGGAFCSGSASAPPFHRYAESLAARAAAVVVSVDYRL 137
>07_03_0503 + 18839863-18841209
Length = 448
Score = 31.9 bits (69), Expect = 0.51
Identities = 17/56 (30%), Positives = 28/56 (50%), Gaps = 5/56 (8%)
Frame = +3
Query: 372 VFAPKMPGDERGCPVVFFVHGGNYKSGSA-----SAYGGQHLTQKDTILVTAQYRL 524
+F P G+ R P+V + HGG + +GSA Y + ++V+ +YRL
Sbjct: 82 LFLPGGGGEGRRLPLVLYFHGGAFVTGSAFGRLFHRYAASLAARAGALVVSVEYRL 137
>09_04_0413 + 17372852-17373787
Length = 311
Score = 30.7 bits (66), Expect = 1.2
Identities = 18/60 (30%), Positives = 25/60 (41%), Gaps = 5/60 (8%)
Frame = +3
Query: 360 LCLNVFAPKMPGDERGCPVVFFVHGGNYKSGSA-----SAYGGQHLTQKDTILVTAQYRL 524
L + VF P P + PV+ F HGG + SA Y + V+ +YRL
Sbjct: 56 LSVRVFLPARPDPSKKLPVLVFFHGGAFVIESAFSTTYHGYAASLAAAAGVVAVSVEYRL 115
>12_01_0913 +
8882193-8883510,8887633-8887865,8889619-8889871,
8891281-8891470,8891641-8891773,8891797-8891886
Length = 738
Score = 30.3 bits (65), Expect = 1.6
Identities = 18/52 (34%), Positives = 21/52 (40%), Gaps = 3/52 (5%)
Frame = +2
Query: 44 CSADLVSSRYSCCRRCAGVTSGTRCSCSFHPAT---WQKREARGSQRRQTRL 190
C + + C AG TS RC F PA+ W RE G RR L
Sbjct: 305 CDSYAKCGAFGLCDSNAGATSICRCVKGFSPASPAEWSMREYSGGCRRDVAL 356
>09_04_0240 + 15958110-15958305,15959586-15960763
Length = 457
Score = 30.3 bits (65), Expect = 1.6
Identities = 17/46 (36%), Positives = 25/46 (54%), Gaps = 5/46 (10%)
Frame = +3
Query: 402 RGCPVVFFVHGGNYKSGSASA-----YGGQHLTQKDTILVTAQYRL 524
R P+V +VHGG + +GSASA Y + ++V+ YRL
Sbjct: 114 RRLPLVVYVHGGAFCTGSASARMFHDYAESLSARAAAVVVSVDYRL 159
>09_04_0421 + 17417851-17418840
Length = 329
Score = 29.9 bits (64), Expect = 2.1
Identities = 19/64 (29%), Positives = 30/64 (46%), Gaps = 7/64 (10%)
Frame = +3
Query: 354 DCLCLNVFAPKMP--GDERGCPVVFFVHGGNYKSGSA-----SAYGGQHLTQKDTILVTA 512
D + ++ P P G R PV+ F HGG + GSA + + + I+V+
Sbjct: 59 DGVSARIYLPSTPASGYGRRLPVLVFFHGGGFCLGSAFDAATHGHANRLAARAGVIVVSV 118
Query: 513 QYRL 524
+YRL
Sbjct: 119 EYRL 122
>07_03_0659 + 20395422-20396765
Length = 447
Score = 29.9 bits (64), Expect = 2.1
Identities = 14/49 (28%), Positives = 26/49 (53%), Gaps = 5/49 (10%)
Frame = +3
Query: 393 GDERGCPVVFFVHGGNYKSGSA-----SAYGGQHLTQKDTILVTAQYRL 524
G R PV+ ++HGG++ + SA Y ++ ++V+ +YRL
Sbjct: 78 GSRRRLPVILYIHGGSFCTESAFCRTYHRYAASLASRAGALVVSVEYRL 126
>01_01_0379 - 2956396-2957409
Length = 337
Score = 29.9 bits (64), Expect = 2.1
Identities = 19/61 (31%), Positives = 27/61 (44%), Gaps = 5/61 (8%)
Frame = +3
Query: 360 LCLNVFAPKMPGDERGCPVVFFVHGGNYKSGSASAYGGQHLTQK-----DTILVTAQYRL 524
L L V+ P GD PV+ HGG Y G+ Q+ ++++A YRL
Sbjct: 64 LKLRVYRPPTAGDAERLPVLVCFHGGGYCLGTFEKPSFHCCCQRLASELRAVVLSADYRL 123
Query: 525 G 527
G
Sbjct: 124 G 124
>08_02_0997 + 23409932-23410894
Length = 320
Score = 29.5 bits (63), Expect = 2.7
Identities = 18/61 (29%), Positives = 30/61 (49%), Gaps = 6/61 (9%)
Frame = +3
Query: 360 LCLNVFAPKMPGDERGC-PVVFFVHGGNYKSGSAS-----AYGGQHLTQKDTILVTAQYR 521
L ++ P + G ER PVV ++HGG GSA+ + + + ++V+ YR
Sbjct: 56 LWARLYLPDLDGGERKLLPVVVYLHGGGLVVGSAADALEHGFANRLCARARALVVSVDYR 115
Query: 522 L 524
L
Sbjct: 116 L 116
>05_07_0219 - 28474661-28475146,28475979-28476644
Length = 383
Score = 29.5 bits (63), Expect = 2.7
Identities = 18/57 (31%), Positives = 27/57 (47%), Gaps = 3/57 (5%)
Frame = -2
Query: 691 DAALPPEPWPITTTRVGSPPKNVI*S*XQAITACRSNKPTFPAAS---LSSVLRYPK 530
D A PP P P++ T PP + S + TA + PT P + S+ L +P+
Sbjct: 71 DTAPPPSPPPLSATTPHPPPPSPATSSSRTATATATATPTSPTPTPPPTSATLLWPR 127
>06_01_1196 +
10289708-10289823,10290828-10291541,10291614-10292058,
10292329-10293642
Length = 862
Score = 29.1 bits (62), Expect = 3.6
Identities = 18/67 (26%), Positives = 35/67 (52%)
Frame = -1
Query: 689 CSAPTRTLAHYNNSSWITTKKRYIVLNXGHYSM*VKQTNVSSCISFISTKVS*RS*AILR 510
C +A YNN+S+I + + I G ++ + TN+S+ + I+ S RS ++
Sbjct: 489 CHLKYLRIARYNNASYIYSLPKSIGRLDGLQTLDLDSTNISTLPTQITKLRSLRSLRCMK 548
Query: 509 RHQYSIF 489
++ +S F
Sbjct: 549 QYDFSSF 555
>09_04_0410 + 17362751-17363698
Length = 315
Score = 28.7 bits (61), Expect = 4.8
Identities = 16/60 (26%), Positives = 27/60 (45%), Gaps = 5/60 (8%)
Frame = +3
Query: 360 LCLNVFAPKMPGDERGCPVVFFVHGGNYKSGSASA-----YGGQHLTQKDTILVTAQYRL 524
L + ++ PK+ + PV+ F HGG + SA + Y ++V+ YRL
Sbjct: 58 LSVRLYLPKIQEPSKKLPVLVFFHGGGFLIESADSSTYHNYVNPFAAAAGVVVVSVDYRL 117
>09_04_0409 + 17359459-17360622
Length = 387
Score = 28.3 bits (60), Expect = 6.3
Identities = 17/58 (29%), Positives = 26/58 (44%), Gaps = 5/58 (8%)
Frame = +3
Query: 366 LNVFAPKMPGDERGCPVVFFVHGGNYKSGSASA-----YGGQHLTQKDTILVTAQYRL 524
+ +F PK+ + PVV F HGG + SA + Y ++V+ YRL
Sbjct: 134 VRLFLPKLQEPSKKLPVVVFFHGGAFFIESAGSETYHNYVNSLAAAAGVLVVSVDYRL 191
>06_01_0781 + 5846501-5847490
Length = 329
Score = 28.3 bits (60), Expect = 6.3
Identities = 20/61 (32%), Positives = 29/61 (47%), Gaps = 6/61 (9%)
Frame = +3
Query: 360 LCLNVFAPKMPGDERG-CPVVFFVHGGNYKSGSAS-----AYGGQHLTQKDTILVTAQYR 521
L +F P G +G PVV + HGG Y GSA+ +Y + + + V +YR
Sbjct: 63 LWARLFLPPGGGAPQGKLPVVVYYHGGAYVVGSAADPFTHSYLNGLVAEAGILAVALEYR 122
Query: 522 L 524
L
Sbjct: 123 L 123
>01_06_1701 - 39290537-39291077,39292110-39292801
Length = 410
Score = 28.3 bits (60), Expect = 6.3
Identities = 16/46 (34%), Positives = 23/46 (50%), Gaps = 5/46 (10%)
Frame = +3
Query: 402 RGCPVVFFVHGGNYKSGSASAYGGQHLTQK-----DTILVTAQYRL 524
R P+V HGG + SGS+S+ ++ D I+V YRL
Sbjct: 130 RRLPIVVQFHGGGFVSGSSSSAANDAFCRRVAKMCDAIVVAVGYRL 175
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,640,952
Number of Sequences: 37544
Number of extensions: 421714
Number of successful extensions: 1155
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 1104
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1155
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1827423340
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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