Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P16_F_J08
(624 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC106.15 |idi1||isopentenyl-diphosphate delta-isomerase Idi1|S... 168 5e-43
SPCC965.14c |||cytosine deaminase |Schizosaccharomyces pombe|chr... 29 0.72
SPBC4.03c |||COPII-coated vesicle component Sfb3 |Schizosaccharo... 29 0.72
SPBC336.12c |cdc10||MBF transcription factor complex subunit Cdc... 28 1.3
SPAC22E12.09c |krp1|krp|kexin|Schizosaccharomyces pombe|chr 1|||... 26 3.8
SPBC3E7.06c |||membrane transporter|Schizosaccharomyces pombe|ch... 26 3.8
SPBC2G2.01c |liz1|SPBC4B4.13c|pantothenate transporter |Schizosa... 25 6.7
SPBPB10D8.04c |||membrane transporter |Schizosaccharomyces pombe... 25 8.9
SPBPB10D8.05c |||membrane transporter |Schizosaccharomyces pombe... 25 8.9
SPBC17G9.11c |pyr1||pyruvate carboxylase|Schizosaccharomyces pom... 25 8.9
SPBPB10D8.06c |||membrane transporter |Schizosaccharomyces pombe... 25 8.9
SPCC1281.01 |ags1|mok1, SPCC338.01c, SPCC17A7.01|alpha-1,4-gluca... 25 8.9
SPBPB10D8.07c |||membrane transporter |Schizosaccharomyces pombe... 25 8.9
>SPBC106.15 |idi1||isopentenyl-diphosphate delta-isomerase
Idi1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 227
Score = 168 bits (409), Expect = 5e-43
Identities = 76/195 (38%), Positives = 117/195 (60%), Gaps = 8/195 (4%)
Frame = +3
Query: 27 KDICLLVDEKDNFIGTATKRECHKVGPDGDVLLHRAFSVFLFNKRGDMFLQRRSSQKVTY 206
+++C++VDE D + TK+ECH + LLHRAFS+F+F+++ + LQ+R+ +K+T+
Sbjct: 19 EEVCIVVDENDVPLRYGTKKECHLMENINKGLLHRAFSMFIFDEQNRLLLQQRAEEKITF 78
Query: 207 PDYYTNACCSHPLYI--------DEKPEEIITAARRRMNHELGIPLDQLDPELFTFMTRV 362
P +TN CCSHPL + E E + AA+R++ HELGI + + F F+TR+
Sbjct: 79 PSLWTNTCCSHPLDVAGERGNTLPEAVEGVKNAAQRKLFHELGIQAKYIPKDKFQFLTRI 138
Query: 363 HYHDPGDGVWGEHEIDHILFFQSDVKVKPNSDEISEYCFVPKAEFNSFLPTLEGPITPWF 542
HY P G WGEHEID+ILFF+ V++ N +E+ Y +V E + TPWF
Sbjct: 139 HYLAPSTGAWGEHEIDYILFFKGKVELDINPNEVQAYKYVTMEELKEMFSDPQYGFTPWF 198
Query: 543 NMIRRHRLKLWWDNL 587
+I H + WW ++
Sbjct: 199 KLICEHFMFKWWQDV 213
>SPCC965.14c |||cytosine deaminase |Schizosaccharomyces pombe|chr
3|||Manual
Length = 162
Score = 28.7 bits (61), Expect = 0.72
Identities = 15/31 (48%), Positives = 18/31 (58%)
Frame = +3
Query: 36 CLLVDEKDNFIGTATKRECHKVGPDGDVLLH 128
C++VDE DN I +A R PDGDV H
Sbjct: 34 CIIVDENDNVIMSAGNRV-----PDGDVTQH 59
>SPBC4.03c |||COPII-coated vesicle component Sfb3
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 891
Score = 28.7 bits (61), Expect = 0.72
Identities = 25/95 (26%), Positives = 39/95 (41%), Gaps = 2/95 (2%)
Frame = +3
Query: 249 IDEKPEEIITAARRRMNHELGIPLDQLDPELFTFMTRVHYHDPGDGV--WGEHEIDHILF 422
++ +PE + ++ + I D P F FM V Y G+ I +IL+
Sbjct: 263 VESRPELNVGTIDFKVGKDYWIKEDPPKPARFVFMIDVSYEASSKGLPKVAAEAIRNILY 322
Query: 423 FQSDVKVKPNSDEISEYCFVPKAEFNSFLPTLEGP 527
V + PN +I+ CF F + P LE P
Sbjct: 323 --GPVPLDPNV-KIAIVCFDRSVNFFNLSPNLEQP 354
>SPBC336.12c |cdc10||MBF transcription factor complex subunit
Cdc10|Schizosaccharomyces pombe|chr 2|||Manual
Length = 767
Score = 27.9 bits (59), Expect = 1.3
Identities = 19/59 (32%), Positives = 28/59 (47%)
Frame = -3
Query: 604 SSLMRCKLSHQSFNRWRRIMLNHGVIGPSKVGRNELNSALGTKQYSEISSEFGLTLTSL 428
SS + L+ SFN R + NH PSK +N +++ + SS F L LT +
Sbjct: 180 SSSISKNLNTSSFNT-RSPLRNHNFSNPSKSSKNGVHTINNMQSSPSPSSSFLLPLTQI 237
>SPAC22E12.09c |krp1|krp|kexin|Schizosaccharomyces pombe|chr
1|||Manual
Length = 709
Score = 26.2 bits (55), Expect = 3.8
Identities = 9/17 (52%), Positives = 13/17 (76%)
Frame = +3
Query: 342 FTFMTRVHYHDPGDGVW 392
+TFMT H+ +P +GVW
Sbjct: 543 WTFMTVQHWAEPPEGVW 559
>SPBC3E7.06c |||membrane transporter|Schizosaccharomyces pombe|chr
2|||Manual
Length = 577
Score = 26.2 bits (55), Expect = 3.8
Identities = 11/39 (28%), Positives = 20/39 (51%)
Frame = -3
Query: 499 LNSALGTKQYSEISSEFGLTLTSLWKNSMWSISCSPHTP 383
L++ + Y++I +EFG W + + ISC+ P
Sbjct: 104 LDNTIVASTYTKIGAEFGKFSQVSWTATAYMISCTAFQP 142
>SPBC2G2.01c |liz1|SPBC4B4.13c|pantothenate transporter
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 514
Score = 25.4 bits (53), Expect = 6.7
Identities = 17/53 (32%), Positives = 24/53 (45%)
Frame = -3
Query: 592 RCKLSHQSFNRWRRIMLNHGVIGPSKVGRNELNSALGTKQYSEISSEFGLTLT 434
R K S Q + + H + K+G+N+ S T EISS GL +T
Sbjct: 449 RIKRSIQDAKDFDDVFTEHESLELKKIGKNDEESLNTTNAVKEISSP-GLVIT 500
>SPBPB10D8.04c |||membrane transporter |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 379
Score = 25.0 bits (52), Expect = 8.9
Identities = 10/17 (58%), Positives = 13/17 (76%)
Frame = +3
Query: 486 KAEFNSFLPTLEGPITP 536
K EF++FLPT+ PI P
Sbjct: 146 KIEFSTFLPTILLPIVP 162
>SPBPB10D8.05c |||membrane transporter |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 379
Score = 25.0 bits (52), Expect = 8.9
Identities = 10/17 (58%), Positives = 13/17 (76%)
Frame = +3
Query: 486 KAEFNSFLPTLEGPITP 536
K EF++FLPT+ PI P
Sbjct: 146 KIEFSTFLPTILLPIVP 162
>SPBC17G9.11c |pyr1||pyruvate carboxylase|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1185
Score = 25.0 bits (52), Expect = 8.9
Identities = 10/27 (37%), Positives = 17/27 (62%)
Frame = -3
Query: 583 LSHQSFNRWRRIMLNHGVIGPSKVGRN 503
+SH S WR+++L++G +K RN
Sbjct: 540 VSHPSEKGWRKLLLDNGPAAFAKAVRN 566
>SPBPB10D8.06c |||membrane transporter |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 379
Score = 25.0 bits (52), Expect = 8.9
Identities = 10/17 (58%), Positives = 13/17 (76%)
Frame = +3
Query: 486 KAEFNSFLPTLEGPITP 536
K EF++FLPT+ PI P
Sbjct: 146 KIEFSTFLPTILLPIVP 162
>SPCC1281.01 |ags1|mok1, SPCC338.01c, SPCC17A7.01|alpha-1,4-glucan
synthase Ags1|Schizosaccharomyces pombe|chr 3|||Manual
Length = 2410
Score = 25.0 bits (52), Expect = 8.9
Identities = 15/42 (35%), Positives = 25/42 (59%)
Frame = -3
Query: 580 SHQSFNRWRRIMLNHGVIGPSKVGRNELNSALGTKQYSEISS 455
S +SF RR + G+ P+K+ NEL+S GT++ +S+
Sbjct: 1903 SERSFFHERRA-IKLGLQKPNKLHVNELSSHSGTEESESLSN 1943
>SPBPB10D8.07c |||membrane transporter |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 379
Score = 25.0 bits (52), Expect = 8.9
Identities = 10/17 (58%), Positives = 13/17 (76%)
Frame = +3
Query: 486 KAEFNSFLPTLEGPITP 536
K EF++FLPT+ PI P
Sbjct: 146 KIEFSTFLPTILLPIVP 162
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,737,267
Number of Sequences: 5004
Number of extensions: 59456
Number of successful extensions: 189
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 184
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 188
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 275671126
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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