Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P16_F_J08
(624 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
07_03_0796 + 21572131-21572204,21573427-21573482,21573580-215736... 170 7e-43
05_04_0307 + 20066169-20066410,20066803-20066858,20067490-200675... 167 8e-42
02_05_1044 + 33728623-33728768,33728814-33728993,33729446-337295... 39 0.004
01_01_0357 - 2816650-2817897 29 3.0
06_01_1001 + 7783072-7783493,7783530-7784212,7784582-7784592 29 4.0
06_01_0268 + 1989069-1989293,1989938-1990020,1990136-1990357,199... 28 5.2
07_03_0618 + 19998470-19998970,19999079-19999517,19999617-199998... 28 6.9
06_01_0560 - 3977456-3977527,3978069-3978182,3978264-3978335,397... 28 6.9
05_07_0328 + 29286109-29286120,29286982-29287146,29288427-292885... 28 6.9
03_02_0284 - 7092506-7092927,7093249-7093414,7093996-7094187,709... 27 9.2
01_05_0735 - 24749975-24750601,24751411-24751541,24752150-247523... 27 9.2
>07_03_0796 +
21572131-21572204,21573427-21573482,21573580-21573671,
21574103-21574205,21574297-21574434,21574654-21574907
Length = 238
Score = 170 bits (414), Expect = 7e-43
Identities = 82/199 (41%), Positives = 124/199 (62%), Gaps = 11/199 (5%)
Frame = +3
Query: 30 DICLLVDEKDNFIGTATKRECHKVGP-DGDVLLHRAFSVFLFNKRGDMFLQRRSSQKVTY 206
D C+LVDE+DN +G +K CH + + + LLHRAFSVFLFN + ++ LQ+RS+ KVT+
Sbjct: 24 DECILVDEQDNVVGHESKYNCHLMEKIESENLLHRAFSVFLFNSKYELLLQQRSATKVTF 83
Query: 207 PDYYTNACCSHPLY-----IDEKPEEIITAARRRMNHELGIPLDQLDPELFTFMTRVHYH 371
P +TN CCSHPLY I E + AA+R++ ELGIP + + + FT + R+ Y
Sbjct: 84 PLVWTNTCCSHPLYRESELIQENYLGVRNAAQRKLLDELGIPAEDVPVDQFTPLGRMLYK 143
Query: 372 DPGDGVWGEHEIDHILFFQSDVKVKPNSDEISEYCFVPKAEFNSFLPTLEG-----PITP 536
P DG WGEHE+D++LF DVKV PN DE+++ +V + + + + ++P
Sbjct: 144 APSDGKWGEHELDYLLFIVRDVKVVPNPDEVADVKYVSREQLKELIRKADAGEEGLKLSP 203
Query: 537 WFNMIRRHRLKLWWDNLHR 593
WF ++ + L WWD++ +
Sbjct: 204 WFRLVVDNFLMGWWDHVEK 222
>05_04_0307 +
20066169-20066410,20066803-20066858,20067490-20067581,
20068400-20068502,20068623-20068760,20068898-20069148
Length = 293
Score = 167 bits (405), Expect = 8e-42
Identities = 85/206 (41%), Positives = 129/206 (62%), Gaps = 11/206 (5%)
Frame = +3
Query: 9 RQXL*SKDICLLVDEKDNFIGTATKRECHKVGP-DGDVLLHRAFSVFLFNKRGDMFLQRR 185
+Q L +D C+LVDE+DN IG +K CH + + +LHRAFSVFLFN + ++ LQ+R
Sbjct: 73 QQRLMFEDECILVDEQDNVIGHDSKYNCHLMEKINSGHVLHRAFSVFLFNSKYELLLQQR 132
Query: 186 SSQKVTYPDYYTNACCSHPLY-----IDEKPEEIITAARRRMNHELGIPLDQLDPELFTF 350
S+ KVT+P +TN CCSHPLY I++K + AA+R++ ELGI ++L + F
Sbjct: 133 SATKVTFPLVWTNTCCSHPLYRESELIEDKSLGVRNAAQRKLFDELGIQAEELPVDQFIP 192
Query: 351 MTRVHYHDPGDGVWGEHEIDHILFFQSDVKVKPNSDEISEYCFVPKAEFNSFLPTL---E 521
+ R+ Y P DG WGEHE+D++LF DV++ PN +E+++ +V + E L E
Sbjct: 193 LGRMLYKAPSDGKWGEHELDYLLFMVRDVELSPNPEEVADVKYVNRDELKELLKKADAGE 252
Query: 522 GPI--TPWFNMIRRHRLKLWWDNLHR 593
G I +PWF ++ + L WWD++ +
Sbjct: 253 GGIKLSPWFRLVVDNFLMRWWDHVEQ 278
>02_05_1044 +
33728623-33728768,33728814-33728993,33729446-33729523,
33729834-33729930,33730206-33730339,33730944-33731025,
33731631-33731717,33731875-33731981,33732674-33732845,
33733018-33733259,33733482-33733563,33733954-33734019,
33734040-33734159,33734935-33735012,33735083-33735178,
33735791-33735897,33736031-33736199,33736402-33736452,
33736567-33736650,33736946-33737040,33737175-33737265,
33737342-33737488,33737614-33737676
Length = 857
Score = 38.7 bits (86), Expect = 0.004
Identities = 30/92 (32%), Positives = 49/92 (53%), Gaps = 2/92 (2%)
Frame = +3
Query: 84 RECHKVGPDGDVLLHRAFSVFLFNKR-GDMFLQRRSSQKVTYPDYYTNACCSHPLYIDEK 260
R +V DGD HRA V+++++ G++ LQRR+ K T+P + + H D
Sbjct: 47 RIASEVHRDGDY--HRAVHVWIYSESTGELLLQRRADCKDTWPGQWDISSAGHISAGDSS 104
Query: 261 PEEIITAARRRMNHELGIPLDQLDPE-LFTFM 353
+++A+R ++ ELGI L E LF F+
Sbjct: 105 ----LSSAQRELDEELGIKLPSDAFELLFVFL 132
>01_01_0357 - 2816650-2817897
Length = 415
Score = 29.1 bits (62), Expect = 3.0
Identities = 11/20 (55%), Positives = 15/20 (75%)
Frame = +3
Query: 510 PTLEGPITPWFNMIRRHRLK 569
P EGP+ PWF +RRH+L+
Sbjct: 130 PASEGPLQPWF--LRRHQLR 147
>06_01_1001 + 7783072-7783493,7783530-7784212,7784582-7784592
Length = 371
Score = 28.7 bits (61), Expect = 4.0
Identities = 11/20 (55%), Positives = 12/20 (60%)
Frame = -1
Query: 267 PRASHLCTVDGCSKHLCSNR 208
P A+ LC VDGC H C R
Sbjct: 140 PLAAVLCAVDGCGHHDCHGR 159
>06_01_0268 +
1989069-1989293,1989938-1990020,1990136-1990357,
1990434-1990621,1990711-1990835,1990988-1991039,
1991585-1991874,1992229-1992307,1992527-1992657
Length = 464
Score = 28.3 bits (60), Expect = 5.2
Identities = 19/41 (46%), Positives = 21/41 (51%), Gaps = 3/41 (7%)
Frame = +3
Query: 324 QLDPELFTFMTRVHYHDP---GDGVWGEHEIDHILFFQSDV 437
QL P FT TRV P + WGE EI L+F SDV
Sbjct: 131 QLHPS-FTNPTRVVEQPPFELSESGWGEFEIAITLYFHSDV 170
>07_03_0618 +
19998470-19998970,19999079-19999517,19999617-19999804,
19999944-20000264
Length = 482
Score = 27.9 bits (59), Expect = 6.9
Identities = 23/63 (36%), Positives = 26/63 (41%), Gaps = 7/63 (11%)
Frame = +3
Query: 366 YHDP-GDGVWGEHEIDHI--LFFQSDVKVKP----NSDEISEYCFVPKAEFNSFLPTLEG 524
YH P G V+ I H+ FF +K P N I YCFVP S P E
Sbjct: 369 YHIPKGWQVFHAQSITHLDGKFFNDPIKFDPTRFDNQSLIPPYCFVPFGGGPSMCPGNEF 428
Query: 525 PIT 533
P T
Sbjct: 429 PRT 431
>06_01_0560 -
3977456-3977527,3978069-3978182,3978264-3978335,
3978428-3978497,3978608-3978705,3978791-3978992,
3979074-3979141,3979960-3980358
Length = 364
Score = 27.9 bits (59), Expect = 6.9
Identities = 15/36 (41%), Positives = 20/36 (55%), Gaps = 4/36 (11%)
Frame = -2
Query: 344 KQFRVQLI*WDSQ----FMVHPTSGCRYDFLGLLIY 249
K+F +Q WD + F++H T GC YD G L Y
Sbjct: 274 KEFMIQPP-WDLEIGDAFIIHYTYGCDYDMKGKLTY 308
>05_07_0328 +
29286109-29286120,29286982-29287146,29288427-29288589,
29288625-29288903,29289047-29289122,29289725-29289787,
29292116-29292164,29292413-29292504,29293017-29293068,
29293209-29293271,29293382-29293431,29293941-29294016,
29294444-29294656,29294763-29294869,29294966-29295074,
29295489-29295689,29295773-29296033,29296154-29296171,
29296287-29296397,29296755-29297030,29297108-29297382,
29297814-29298165,29298371-29298655,29298715-29299261,
29301658-29301781,29301871-29301946,29302062-29302136,
29302300-29302353,29302833-29302892,29302977-29303093,
29303228-29303361,29303480-29303682,29303879-29303976,
29304358-29304461,29304537-29304702,29304803-29304925,
29305047-29305129,29305217-29305358,29305523-29305549,
29305784-29305854,29305930-29306518
Length = 2046
Score = 27.9 bits (59), Expect = 6.9
Identities = 14/37 (37%), Positives = 21/37 (56%)
Frame = -1
Query: 267 PRASHLCTVDGCSKHLCSNRDMLLFGLISSEGTYHLS 157
PR+ LCT++G S LC+ D LF + + T L+
Sbjct: 802 PRSVLLCTLEGVSYLLCALGDGHLFSFLLNASTGELT 838
>03_02_0284 -
7092506-7092927,7093249-7093414,7093996-7094187,
7094289-7094510
Length = 333
Score = 27.5 bits (58), Expect = 9.2
Identities = 9/17 (52%), Positives = 13/17 (76%)
Frame = +3
Query: 324 QLDPELFTFMTRVHYHD 374
Q DP +F +TR+H+HD
Sbjct: 54 QDDPRIFASLTRLHFHD 70
>01_05_0735 -
24749975-24750601,24751411-24751541,24752150-24752336,
24753801-24753898,24754182-24754689
Length = 516
Score = 27.5 bits (58), Expect = 9.2
Identities = 13/42 (30%), Positives = 23/42 (54%)
Frame = -3
Query: 172 NISPLLLKRKTLNALWSSTSPSGPTL*HSLFVAVPMKLSFSS 47
+I +LL L +++S SP+GP + + V + L+F S
Sbjct: 190 SIGTILLAADCLEIMYTSLSPNGPLKLYHFIIIVAVALAFLS 231
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,122,254
Number of Sequences: 37544
Number of extensions: 432566
Number of successful extensions: 1308
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 1260
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1302
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1513903616
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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