Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P16_F_J08
         (624 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

L15314-5|AAK18968.1|  236|Caenorhabditis elegans Isopentenyl dip...   111   3e-25
AY597336-1|AAT08468.1|  236|Caenorhabditis elegans isopentenyl-d...   111   3e-25

>L15314-5|AAK18968.1|  236|Caenorhabditis elegans Isopentenyl
           diphosphate isomeraseprotein 1 protein.
          Length = 236

 Score =  111 bits (268), Expect = 3e-25
 Identities = 65/206 (31%), Positives = 103/206 (50%), Gaps = 7/206 (3%)
 Frame = +3

Query: 27  KDICLLVDEKDNFIGTATKRECHKVGPDGDVLLHRAFSVFLFNKRGDMFLQRRSSQKVTY 206
           ++ C+ VDE D  IG  +KRE H       ++LHRAFSVF F     + +Q+RS++K+T+
Sbjct: 32  REQCINVDENDRIIGGVSKREAHS---SYQLVLHRAFSVFSFTSDNKLLMQKRSAEKITF 88

Query: 207 PDYYTNACCSHPLYIDEKPEEIITAAR---RRMNHELGIPLDQLDPELFTFMTRVHYH-D 374
           P+ +TN CCSHPL+  ++ + +  A R   R++ HELGI    L+   F    +  Y  +
Sbjct: 89  PNLWTNTCCSHPLHTQQEMDGVPGAKRAAIRKLEHELGITGVSLNK--FQMAGKYIYRAE 146

Query: 375 PGDGVWGEHEIDHILFFQ--SDVKVKPNSDEISEYCFVPKAEFNSFLPTLEGPITPWFNM 548
             +  WGEHE+D+ L  +         N +E++E   V   E   ++       TPW  +
Sbjct: 147 MNNAPWGEHELDYALILRGIGAENCNINENEVAEVREVVLDELKLWMRKEPNSFTPWLKL 206

Query: 549 I-RRHRLKLWWDNLHRIKELAEPXKI 623
             +    + WW      +E  E   I
Sbjct: 207 FSQTETFEKWWTINKNTEESIEDTNI 232


>AY597336-1|AAT08468.1|  236|Caenorhabditis elegans
           isopentenyl-diphosphate isomerase protein.
          Length = 236

 Score =  111 bits (268), Expect = 3e-25
 Identities = 65/206 (31%), Positives = 103/206 (50%), Gaps = 7/206 (3%)
 Frame = +3

Query: 27  KDICLLVDEKDNFIGTATKRECHKVGPDGDVLLHRAFSVFLFNKRGDMFLQRRSSQKVTY 206
           ++ C+ VDE D  IG  +KRE H       ++LHRAFSVF F     + +Q+RS++K+T+
Sbjct: 32  REQCINVDENDRIIGGVSKREAHS---SYQLVLHRAFSVFSFTSDNKLLMQKRSAEKITF 88

Query: 207 PDYYTNACCSHPLYIDEKPEEIITAAR---RRMNHELGIPLDQLDPELFTFMTRVHYH-D 374
           P+ +TN CCSHPL+  ++ + +  A R   R++ HELGI    L+   F    +  Y  +
Sbjct: 89  PNLWTNTCCSHPLHTQQEMDGVPGAKRAAIRKLEHELGITGVSLNK--FQMAGKYIYRAE 146

Query: 375 PGDGVWGEHEIDHILFFQ--SDVKVKPNSDEISEYCFVPKAEFNSFLPTLEGPITPWFNM 548
             +  WGEHE+D+ L  +         N +E++E   V   E   ++       TPW  +
Sbjct: 147 MNNAPWGEHELDYALILRGIGAENCNINENEVAEVREVVLDELKLWMRKEPNSFTPWLKL 206

Query: 549 I-RRHRLKLWWDNLHRIKELAEPXKI 623
             +    + WW      +E  E   I
Sbjct: 207 FSQTETFEKWWTINKNTEESIEDTNI 232


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,491,989
Number of Sequences: 27780
Number of extensions: 346330
Number of successful extensions: 949
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 898
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 943
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1363963182
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)