Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P16_F_J06
(736 letters)
Database: uniref50
1,657,284 sequences; 575,637,011 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
UniRef50_P49821 Cluster: NADH dehydrogenase [ubiquinone] flavopr... 364 1e-99
UniRef50_A1ZAW7 Cluster: CG11423-PA; n=2; Drosophila melanogaste... 339 4e-92
UniRef50_Q4UKA6 Cluster: NADH-quinone oxidoreductase subunit F; ... 255 7e-67
UniRef50_A1Z9Z7 Cluster: CG8102-PA, isoform A; n=4; Sophophora|R... 242 7e-63
UniRef50_Q1IZW8 Cluster: NADH-quinone oxidoreductase, F subunit;... 184 2e-45
UniRef50_Q1IS37 Cluster: NADH-quinone oxidoreductase, F subunit;... 184 2e-45
UniRef50_Q8F7Q4 Cluster: NADH dehydrogenase I, F subunit; n=9; B... 180 4e-44
UniRef50_Q56222 Cluster: NADH-quinone oxidoreductase subunit 1; ... 179 6e-44
UniRef50_P56913 Cluster: NADH-quinone oxidoreductase subunit F 2... 177 2e-43
UniRef50_Q9WY70 Cluster: NADP-reducing hydrogenase, subunit C; n... 173 4e-42
UniRef50_A2DV30 Cluster: Respiratory-chain NADH dehydrogenase 51... 173 4e-42
UniRef50_A5UVG4 Cluster: NADH-quinone oxidoreductase, F subunit;... 169 6e-41
UniRef50_Q2S5I8 Cluster: Respiratory-chain NADH dehydrogenase 51... 168 1e-40
UniRef50_Q9I0J7 Cluster: NADH-quinone oxidoreductase subunit F; ... 167 2e-40
UniRef50_A7CUG0 Cluster: NADH dehydrogenase; n=1; Opitutaceae ba... 165 1e-39
UniRef50_Q9XAQ9 Cluster: NADH-quinone oxidoreductase subunit F; ... 164 2e-39
UniRef50_A6FCN1 Cluster: NuoF2 NADH I CHAIN F; n=1; Moritella sp... 163 4e-39
UniRef50_Q2LYA9 Cluster: NADH:ubiquinone oxidoreductase, NADH-bi... 162 9e-39
UniRef50_Q7XZ61 Cluster: NADH dehydrogenase; n=1; Griffithsia ja... 162 9e-39
UniRef50_Q2LS97 Cluster: NADH-quinone oxidoreductase chain F; n=... 159 7e-38
UniRef50_Q8RBC9 Cluster: NADH:ubiquinone oxidoreductase, NADH-bi... 159 9e-38
UniRef50_Q2AG83 Cluster: 4Fe-4S ferredoxin, iron-sulfur binding:... 158 1e-37
UniRef50_Q2C5T6 Cluster: NADH dehydrogenase I, F subunit; n=2; V... 156 5e-37
UniRef50_A4MHV7 Cluster: NADH dehydrogenase; n=5; Bacteria|Rep: ... 156 6e-37
UniRef50_O66841 Cluster: NADH-quinone oxidoreductase subunit F; ... 155 8e-37
UniRef50_Q2LQE7 Cluster: NADH-quinone oxidoreductase chain F; n=... 155 1e-36
UniRef50_A1ALP4 Cluster: NADH dehydrogenase; n=1; Pelobacter pro... 154 2e-36
UniRef50_O27592 Cluster: NADP-reducing hydrogenase, subunit C; n... 152 7e-36
UniRef50_Q6AQG1 Cluster: Probable NADP-reducing hydrogenase, 51 ... 147 2e-34
UniRef50_Q746S7 Cluster: NADH dehydrogenase I, F subunit; n=7; D... 146 6e-34
UniRef50_Q2AFM4 Cluster: Respiratory-chain NADH dehydrogenase do... 146 6e-34
UniRef50_Q9ZBV8 Cluster: Putative respiratory chain oxidoreducta... 144 2e-33
UniRef50_Q3A639 Cluster: NADH:ubiquinone oxidoreductase, NADH-bi... 144 2e-33
UniRef50_Q7WMR8 Cluster: NAD-dependent formate dehydrogenase bet... 144 3e-33
UniRef50_A3ETZ6 Cluster: NADH ubiquinone oxidoreductase; n=1; Le... 142 8e-33
UniRef50_A5FSK8 Cluster: NADH dehydrogenase; n=3; Dehalococcoide... 141 1e-32
UniRef50_Q8ABI5 Cluster: NADH:ubiquinone oxidoreductase subunit;... 140 4e-32
UniRef50_Q6MDR1 Cluster: Probable NADH-ubiquinone oxidoreductase... 140 4e-32
UniRef50_P74024 Cluster: Hydrogenase subunit; n=13; Bacteria|Rep... 138 1e-31
UniRef50_Q835I8 Cluster: NAD-dependent formate dehydrogenase, be... 136 4e-31
UniRef50_Q3ZXP7 Cluster: Hydrogenase subunit HymB; n=7; Bacteria... 136 5e-31
UniRef50_A5FXJ6 Cluster: NADH dehydrogenase; n=1; Acidiphilium c... 135 9e-31
UniRef50_A6GJI0 Cluster: Putative NADH dehydrogenase I chain F; ... 134 2e-30
UniRef50_O94500 Cluster: Iron sulfur cluster assembly protein; n... 132 6e-30
UniRef50_Q6N1Z2 Cluster: NADH-ubiquinone dehydrogenase chain F; ... 131 1e-29
UniRef50_A0NMW4 Cluster: NADH:ubiquinone oxidoreductase, NADH-bi... 129 8e-29
UniRef50_A0RMD3 Cluster: NADH-quinone oxidoreductase chain f; n=... 128 1e-28
UniRef50_Q47HE6 Cluster: NADH dehydrogenase (Ubiquinone), 24 kDa... 126 6e-28
UniRef50_A6PMG7 Cluster: NADH dehydrogenase (Quinone) precursor;... 126 7e-28
UniRef50_Q4AEJ7 Cluster: Hydrogen dehydrogenase; n=1; Chlorobium... 125 1e-27
UniRef50_Q1V283 Cluster: NAD-dependent formate dehydrogenase bet... 123 4e-27
UniRef50_Q603S6 Cluster: NAD-reducing hydrogenase, alpha subunit... 118 1e-25
UniRef50_A1WBG0 Cluster: NADH dehydrogenase (Quinone) precursor;... 116 6e-25
UniRef50_A0K164 Cluster: NADH dehydrogenase; n=2; Actinomycetale... 110 3e-23
UniRef50_A1HDX5 Cluster: NADH dehydrogenase; n=4; Ralstonia pick... 108 1e-22
UniRef50_A3EW61 Cluster: NADH ubiquinone oxidoreductase; n=1; Le... 107 4e-22
UniRef50_A1SU84 Cluster: Hydrogenase, NADP-reducing subunit C; n... 107 4e-22
UniRef50_Q5P4U3 Cluster: Formate dehydrogenase, NAD(P) reducing,... 100 7e-20
UniRef50_Q1PZQ6 Cluster: Similar to NADH dehydrogenase I chain F... 98 2e-19
UniRef50_Q67JR5 Cluster: NADH dehydrogenase subunit; n=1; Symbio... 95 1e-18
UniRef50_UPI0000384AE3 Cluster: COG1894: NADH:ubiquinone oxidore... 95 2e-18
UniRef50_A7IMB3 Cluster: NADH dehydrogenase; n=3; Proteobacteria... 91 3e-17
UniRef50_A5X3H0 Cluster: HtxX; n=1; Xanthobacter flavus|Rep: Htx... 81 3e-14
UniRef50_O96948 Cluster: Hydrogenase; n=14; Eukaryota|Rep: Hydro... 79 1e-13
UniRef50_A3Q2V2 Cluster: Respiratory-chain NADH dehydrogenase do... 68 3e-10
UniRef50_Q51696 Cluster: Putative uncharacterized protein ORF2; ... 60 4e-08
UniRef50_A5N6H2 Cluster: RnfC related NADH dehydrogenase; n=2; C... 59 1e-07
UniRef50_A1SNE6 Cluster: Respiratory-chain NADH dehydrogenase do... 58 3e-07
UniRef50_A7G5W1 Cluster: NADH dehydrogenase family protein; n=4;... 55 2e-06
UniRef50_Q44SY7 Cluster: Electron transport complex, RnfABCDGE t... 54 4e-06
UniRef50_Q9ACZ1 Cluster: Putative oxidoreductase; n=3; Streptomy... 54 5e-06
UniRef50_Q73PG1 Cluster: Na(+)-translocating NADH-quinone reduct... 54 5e-06
UniRef50_Q92CR5 Cluster: Lin1106 protein; n=13; Listeria|Rep: Li... 53 8e-06
UniRef50_A1WT48 Cluster: Electron transport complex, RnfABCDGE t... 53 8e-06
UniRef50_A0LLS5 Cluster: Electron transport complex, RnfABCDGE t... 52 2e-05
UniRef50_Q67R12 Cluster: Na+-transporting NADH-quinone reductase... 51 3e-05
UniRef50_Q21I18 Cluster: Electron transport complex, RnfABCDGE t... 51 3e-05
UniRef50_Q0EPY6 Cluster: Electron transport complex, RnfABCDGE t... 51 3e-05
UniRef50_Q0AAG9 Cluster: Electron transport complex, RnfABCDGE t... 51 3e-05
UniRef50_A7BY78 Cluster: Electron transport complex protein rnfC... 50 6e-05
UniRef50_A1SQ39 Cluster: Respiratory-chain NADH dehydrogenase do... 50 6e-05
UniRef50_UPI0000E87BCA Cluster: predicted NADH:ubiquinone oxidor... 49 1e-04
UniRef50_Q896I5 Cluster: RnfC/nqrF; n=18; Clostridiales|Rep: Rnf... 49 1e-04
UniRef50_A6PV28 Cluster: Respiratory-chain NADH dehydrogenase do... 49 1e-04
UniRef50_A1I872 Cluster: Electron transport complex, RnfABCDGE t... 49 1e-04
UniRef50_A6TJY1 Cluster: Respiratory-chain NADH dehydrogenase do... 48 2e-04
UniRef50_Q9WY86 Cluster: Electron transport complex protein, put... 48 3e-04
UniRef50_A4CB98 Cluster: Electron transport complex protein RnfC... 48 3e-04
UniRef50_Q482U5 Cluster: Electron transport complex, RnfABCDGE t... 47 4e-04
UniRef50_A6NTM2 Cluster: Putative uncharacterized protein; n=1; ... 47 6e-04
UniRef50_Q0PIB6 Cluster: Ethanolamine utilization Fe-S center pr... 46 7e-04
UniRef50_Q8AA47 Cluster: Na+-transporting NADH:ubiquinone oxidor... 46 0.001
UniRef50_Q2SKU6 Cluster: Predicted NADH:ubiquinone oxidoreductas... 46 0.001
UniRef50_Q1Q5X5 Cluster: Conserved hypothetical iron sulfur prot... 46 0.001
UniRef50_A1AVH8 Cluster: Electron transport complex, RnfABCDGE t... 46 0.001
UniRef50_Q8RIJ6 Cluster: Nitrogen fixation iron-sulphur protein ... 45 0.002
UniRef50_Q31GU4 Cluster: NADH oxidoreductase, RnfABCDGE type, C ... 45 0.002
UniRef50_Q18V42 Cluster: Respiratory-chain NADH dehydrogenase do... 45 0.002
UniRef50_Q0VP39 Cluster: Electron transport complex protein rnfC... 45 0.002
UniRef50_Q603B2 Cluster: Electron transport complex, C subunit; ... 45 0.002
UniRef50_Q2J9U3 Cluster: Respiratory-chain NADH dehydrogenase do... 44 0.003
UniRef50_Q9KT88 Cluster: Electron transport complex protein rnfC... 44 0.003
UniRef50_A6TUS7 Cluster: Respiratory-chain NADH dehydrogenase do... 44 0.004
UniRef50_Q1FMT5 Cluster: Respiratory-chain NADH dehydrogenase do... 43 0.007
UniRef50_A1WUZ0 Cluster: Electron transport complex, RnfABCDGE t... 43 0.007
UniRef50_Q52716 Cluster: Electron transport complex protein rnfC... 43 0.007
UniRef50_A6FIW1 Cluster: Electron transport complex protein RnfC... 42 0.012
UniRef50_A4B3H4 Cluster: Electron transport complex protein RnfC... 42 0.012
UniRef50_Q1EUM7 Cluster: Respiratory-chain NADH dehydrogenase do... 42 0.016
UniRef50_Q02B56 Cluster: Respiratory-chain NADH dehydrogenase do... 42 0.016
UniRef50_A6NT39 Cluster: Putative uncharacterized protein; n=1; ... 42 0.016
UniRef50_A3DI53 Cluster: Electron transport complex, RnfABCDGE t... 42 0.016
UniRef50_A1U014 Cluster: Respiratory-chain NADH dehydrogenase do... 42 0.016
UniRef50_A5N7M5 Cluster: RnfC; n=1; Clostridium kluyveri DSM 555... 41 0.027
UniRef50_A5EVI2 Cluster: Electron transport complex protein, C s... 41 0.027
UniRef50_A7B0F4 Cluster: Putative uncharacterized protein; n=1; ... 41 0.036
UniRef50_Q9XDM9 Cluster: Propanediol utilization protein; n=15; ... 40 0.048
UniRef50_Q2BP71 Cluster: Electron transport complex protein RnfC... 40 0.048
UniRef50_Q1ZEG2 Cluster: Electron transport complex protein RnfC... 40 0.048
UniRef50_Q9CNP2 Cluster: Electron transport complex protein rnfC... 40 0.063
UniRef50_Q1VMJ2 Cluster: Formate dehydrogenase, beta subunit; n=... 40 0.084
UniRef50_A7GJH3 Cluster: Respiratory-chain NADH dehydrogenase fa... 40 0.084
UniRef50_A1WTR7 Cluster: Electron transport complex, RnfABCDGE t... 40 0.084
UniRef50_Q5P537 Cluster: Electron transport complex protein rnfC... 39 0.11
UniRef50_Q5NLH4 Cluster: NADH:ubiquinone oxidoreductase subunit;... 39 0.11
UniRef50_Q15RL3 Cluster: Electron transport complex, RnfABCDGE t... 39 0.15
UniRef50_A6PDB0 Cluster: Electron transport complex, RnfABCDGE t... 39 0.15
UniRef50_A6BIN7 Cluster: Putative uncharacterized protein; n=1; ... 39 0.15
UniRef50_Q3A7W8 Cluster: Predicted NADH:ubiquinone oxidoreductas... 38 0.26
UniRef50_Q2NSZ7 Cluster: Putative iron-sulfur binding NADH dehyd... 38 0.26
UniRef50_Q1N6T4 Cluster: Electron transport complex protein RnfC... 38 0.26
UniRef50_A1SSX3 Cluster: Electron transport complex, RnfABCDGE t... 38 0.26
UniRef50_Q9HYB8 Cluster: Electron transport complex protein rnfC... 38 0.34
UniRef50_Q89AW8 Cluster: Electron transport complex protein rnfC... 38 0.34
UniRef50_Q5FP48 Cluster: Outer membrane protein; n=2; Gluconobac... 36 0.78
UniRef50_Q1AWR7 Cluster: Respiratory-chain NADH dehydrogenase do... 36 0.78
UniRef50_A0L5G6 Cluster: Electron transport complex, RnfABCDGE t... 36 0.78
UniRef50_Q30W86 Cluster: Electron transfer protein; n=1; Desulfo... 36 1.4
UniRef50_Q3YL96 Cluster: CdiA; n=3; Escherichia coli|Rep: CdiA -... 35 1.8
UniRef50_A4RAI3 Cluster: Putative uncharacterized protein; n=1; ... 35 1.8
UniRef50_A7QGL6 Cluster: Chromosome chr12 scaffold_93, whole gen... 35 2.4
UniRef50_Q0HIH8 Cluster: Electron transport complex, RnfABCDGE t... 34 3.1
UniRef50_Q0F0I1 Cluster: Electron transport complex protein RnfC... 34 3.1
UniRef50_P57215 Cluster: Electron transport complex protein rnfC... 34 3.1
UniRef50_Q82NN9 Cluster: Putative uncharacterized protein; n=1; ... 34 4.2
UniRef50_A6VVJ2 Cluster: Electron transport complex, RnfABCDGE t... 34 4.2
UniRef50_A6M0M4 Cluster: Respiratory-chain NADH dehydrogenase do... 34 4.2
UniRef50_A0JX02 Cluster: Peptidase S9, prolyl oligopeptidase act... 34 4.2
UniRef50_Q6LTT0 Cluster: Hypothetical type I restriction-modific... 33 5.5
UniRef50_Q8C4U5 Cluster: 10 days neonate cerebellum cDNA, RIKEN ... 33 9.6
UniRef50_Q6AIR8 Cluster: Related to propanediol utilization prot... 33 9.6
UniRef50_Q03BW1 Cluster: ABC-type uncharacterized transport syst... 33 9.6
UniRef50_A6PKR4 Cluster: Putative uncharacterized protein precur... 33 9.6
UniRef50_A4W4W3 Cluster: Filamentous haemagglutinin family outer... 33 9.6
UniRef50_A1CNT7 Cluster: Fungal specific transcription factor do... 33 9.6
>UniRef50_P49821 Cluster: NADH dehydrogenase [ubiquinone]
flavoprotein 1, mitochondrial precursor; n=215; cellular
organisms|Rep: NADH dehydrogenase [ubiquinone]
flavoprotein 1, mitochondrial precursor - Homo sapiens
(Human)
Length = 464
Score = 364 bits (896), Expect = 1e-99
Identities = 162/195 (83%), Positives = 177/195 (90%), Gaps = 1/195 (0%)
Frame = +2
Query: 155 VPVRFQ-QTQAPSKDKYGPLADSDRVFTNLYGRHEWRLKGALARGDWYLTKEILLKGTDW 331
V VRF T AP K +G L D DR+FTNLYGRH+WRLKG+L+RGDWY TKEILLKG DW
Sbjct: 16 VSVRFSGDTTAPKKTSFGSLKDEDRIFTNLYGRHDWRLKGSLSRGDWYKTKEILLKGPDW 75
Query: 332 IVNEMKTSGLRGRGGAGFPTGMKWSFMNKPSDGRPKYLVVNADEGEPGTCKDREIMRHDP 511
I+ E+KTSGLRGRGGAGFPTG+KWSFMNKPSDGRPKYLVVNADEGEPGTCKDREI+RHDP
Sbjct: 76 ILGEIKTSGLRGRGGAGFPTGLKWSFMNKPSDGRPKYLVVNADEGEPGTCKDREILRHDP 135
Query: 512 HKLVEGCLIAGRAMGAQAAYIYIRGEFYNEASNLQVAIAEAYQAGLIGKNSCGSGYDFDI 691
HKL+EGCL+ GRAMGA+AAYIYIRGEFYNEASNLQVAI EAY+AGLIGKN+CGSGYDFD+
Sbjct: 136 HKLLEGCLVGGRAMGARAAYIYIRGEFYNEASNLQVAIREAYEAGLIGKNACGSGYDFDV 195
Query: 692 FVHRGAGAYICGEXT 736
FV RGAGAYICGE T
Sbjct: 196 FVVRGAGAYICGEET 210
>UniRef50_A1ZAW7 Cluster: CG11423-PA; n=2; Drosophila
melanogaster|Rep: CG11423-PA - Drosophila melanogaster
(Fruit fly)
Length = 702
Score = 339 bits (833), Expect = 4e-92
Identities = 146/183 (79%), Positives = 165/183 (90%)
Frame = +2
Query: 188 SKDKYGPLADSDRVFTNLYGRHEWRLKGALARGDWYLTKEILLKGTDWIVNEMKTSGLRG 367
+K +GPLAD+DR+FTNLYGRH+WRLK A+ RGDWY TKEI+ KG WIVNE+KTSGLRG
Sbjct: 251 TKTTFGPLADADRIFTNLYGRHDWRLKAAMKRGDWYKTKEIIAKGDKWIVNEIKTSGLRG 310
Query: 368 RGGAGFPTGMKWSFMNKPSDGRPKYLVVNADEGEPGTCKDREIMRHDPHKLVEGCLIAGR 547
RGGAGFP+G+KWSFM+KP DGRPK+LVVNADEGEPGTCKDREIMRHDPHKLVEGCLIAGR
Sbjct: 311 RGGAGFPSGLKWSFMHKPPDGRPKFLVVNADEGEPGTCKDREIMRHDPHKLVEGCLIAGR 370
Query: 548 AMGAQAAYIYIRGEFYNEASNLQVAIAEAYQAGLIGKNSCGSGYDFDIFVHRGAGAYICG 727
AMGA +IYIRGEFYNEA NLQ AI EAY+AG +GKN+CGSG+DFD++V RGAGAYICG
Sbjct: 371 AMGANTGFIYIRGEFYNEACNLQYAIIEAYKAGYLGKNACGSGFDFDLYVQRGAGAYICG 430
Query: 728 EXT 736
E T
Sbjct: 431 EET 433
>UniRef50_Q4UKA6 Cluster: NADH-quinone oxidoreductase subunit F;
n=11; Proteobacteria|Rep: NADH-quinone oxidoreductase
subunit F - Rickettsia felis (Rickettsia azadi)
Length = 422
Score = 255 bits (625), Expect = 7e-67
Identities = 116/176 (65%), Positives = 142/176 (80%)
Frame = +2
Query: 209 LADSDRVFTNLYGRHEWRLKGALARGDWYLTKEILLKGTDWIVNEMKTSGLRGRGGAGFP 388
L + D++FTNL+G+ LK + RGDW TK +L KG ++I+ E+K SGLRGRGGAGF
Sbjct: 2 LKEEDKIFTNLHGQQSHDLKSSKKRGDWDNTKALLDKGREFIIEEVKKSGLRGRGGAGFS 61
Query: 389 TGMKWSFMNKPSDGRPKYLVVNADEGEPGTCKDREIMRHDPHKLVEGCLIAGRAMGAQAA 568
TGMKWSFM K S +P YLVVNADE EPGTCKDR+I+R +PHKL+EGCL+A A+GA
Sbjct: 62 TGMKWSFMPKNS-AKPCYLVVNADESEPGTCKDRDILRFEPHKLIEGCLLASFAIGANDC 120
Query: 569 YIYIRGEFYNEASNLQVAIAEAYQAGLIGKNSCGSGYDFDIFVHRGAGAYICGEXT 736
YIYIRGEFYNEASN+Q A+ EAY+ GLIGKN+CGSG+D +I++HRGAGAYICGE T
Sbjct: 121 YIYIRGEFYNEASNIQRALDEAYKDGLIGKNACGSGFDCNIYLHRGAGAYICGEET 176
>UniRef50_A1Z9Z7 Cluster: CG8102-PA, isoform A; n=4; Sophophora|Rep:
CG8102-PA, isoform A - Drosophila melanogaster (Fruit
fly)
Length = 481
Score = 242 bits (592), Expect = 7e-63
Identities = 107/183 (58%), Positives = 134/183 (73%), Gaps = 1/183 (0%)
Frame = +2
Query: 191 KDKYGPLADSDRVFTNLYGRHEWRLKGALARGDWYLTKEILLKGTDWIVNEMKTSGLRGR 370
K K+GPL D DRVF NLYGRH+WRL GA RGDW+ T E+L +G +WI+ ++ SGLRGR
Sbjct: 52 KTKFGPLDDCDRVFQNLYGRHDWRLHGACQRGDWHRTAELLEQGPEWIMKQVSKSGLRGR 111
Query: 371 GGAGFPTGMKWSFMNKP-SDGRPKYLVVNADEGEPGTCKDREIMRHDPHKLVEGCLIAGR 547
GGAGF G+KW F+ + S+ PK ++VN EGEPGTCKDR+I+RH+PHKL+EG L+ G
Sbjct: 112 GGAGFYAGLKWEFLRQTKSEKVPKMVIVNCAEGEPGTCKDRDILRHEPHKLIEGILLVGV 171
Query: 548 AMGAQAAYIYIRGEFYNEASNLQVAIAEAYQAGLIGKNSCGSGYDFDIFVHRGAGAYICG 727
AMG A +YIR FYNEA NL A+AEAY GL+G + CG+G FD+ V RG Y+CG
Sbjct: 172 AMGCGRAIVYIRNRFYNEACNLHFALAEAYHHGLLGNSVCGTGIKFDVMVQRG-DRYLCG 230
Query: 728 EXT 736
E T
Sbjct: 231 EET 233
>UniRef50_Q1IZW8 Cluster: NADH-quinone oxidoreductase, F subunit;
n=1; Deinococcus geothermalis DSM 11300|Rep:
NADH-quinone oxidoreductase, F subunit - Deinococcus
geothermalis (strain DSM 11300)
Length = 446
Score = 184 bits (448), Expect = 2e-45
Identities = 87/160 (54%), Positives = 108/160 (67%)
Frame = +2
Query: 257 WRLKGALARGDWYLTKEILLKGTDWIVNEMKTSGLRGRGGAGFPTGMKWSFMNKPSDGRP 436
W L L G + + D ++ E+K SGLRGRGGAGF TG+KWSFM +DG+
Sbjct: 33 WTLDFYLRHGGYQGVRRAFALRPDAVIEEVKKSGLRGRGGAGFATGLKWSFMPL-NDGKQ 91
Query: 437 KYLVVNADEGEPGTCKDREIMRHDPHKLVEGCLIAGRAMGAQAAYIYIRGEFYNEASNLQ 616
Y++ NADE EPG+ KDR ++ DPH+L+EG LI G AM A YIYIRGE+ + A +
Sbjct: 92 HYIICNADESEPGSFKDRYLLSEDPHQLIEGMLIGGYAMRASVGYIYIRGEYVHAAGRVW 151
Query: 617 VAIAEAYQAGLIGKNSCGSGYDFDIFVHRGAGAYICGEXT 736
AI EA AGL+GKN GSG+DFD+ VHRGAGAYICGE T
Sbjct: 152 AAIREARAAGLLGKNVLGSGFDFDLQVHRGAGAYICGEET 191
>UniRef50_Q1IS37 Cluster: NADH-quinone oxidoreductase, F subunit;
n=9; Bacteria|Rep: NADH-quinone oxidoreductase, F
subunit - Acidobacteria bacterium (strain Ellin345)
Length = 439
Score = 184 bits (448), Expect = 2e-45
Identities = 88/172 (51%), Positives = 117/172 (68%)
Frame = +2
Query: 215 DSDRVFTNLYGRHEWRLKGALARGDWYLTKEILLKGTDWIVNEMKTSGLRGRGGAGFPTG 394
D +V ++ +G+ + L + ++ L D I+NE+K S LRGRGGAGFPTG
Sbjct: 9 DEVKVISSRWGKGATDIDRYLELDGYKAVQKALTMTPDAIINEVKASNLRGRGGAGFPTG 68
Query: 395 MKWSFMNKPSDGRPKYLVVNADEGEPGTCKDREIMRHDPHKLVEGCLIAGRAMGAQAAYI 574
+KWSF+ K S +PKY++ N DE EPGTCKDR I HDPH ++EG +IAG A+GA++AYI
Sbjct: 69 LKWSFVPKES-AKPKYILCNGDESEPGTCKDRLIFEHDPHGVIEGAIIAGLAVGAKSAYI 127
Query: 575 YIRGEFYNEASNLQVAIAEAYQAGLIGKNSCGSGYDFDIFVHRGAGAYICGE 730
Y+RGE+ + +Q AIA+AY G IGKN GSG DFD++ H GAGAY GE
Sbjct: 128 YLRGEYRYLSIIMQKAIADAYAKGFIGKNIFGSGKDFDVYWHGGAGAYEVGE 179
>UniRef50_Q8F7Q4 Cluster: NADH dehydrogenase I, F subunit; n=9;
Bacteria|Rep: NADH dehydrogenase I, F subunit -
Leptospira interrogans
Length = 443
Score = 180 bits (437), Expect = 4e-44
Identities = 81/145 (55%), Positives = 106/145 (73%)
Frame = +2
Query: 302 KEILLKGTDWIVNEMKTSGLRGRGGAGFPTGMKWSFMNKPSDGRPKYLVVNADEGEPGTC 481
K+ L D I+ E+K SGLRGRGGAGFPTG+KWSF+ K +PKY++ NADEGEPGT
Sbjct: 32 KKALQMKPDDIIAEVKKSGLRGRGGAGFPTGLKWSFIPKDIP-KPKYIICNADEGEPGTF 90
Query: 482 KDREIMRHDPHKLVEGCLIAGRAMGAQAAYIYIRGEFYNEASNLQVAIAEAYQAGLIGKN 661
KDR+++ + PH+++EG +I RA+G+ + YIRGEF A +Q AI EAY G +GKN
Sbjct: 91 KDRKLIENLPHQIIEGMIIGARAIGSNKGFFYIRGEFQKGAKAMQAAIDEAYSKGYLGKN 150
Query: 662 SCGSGYDFDIFVHRGAGAYICGEXT 736
GSG+DFD+ ++ GAGAYICGE T
Sbjct: 151 ILGSGFDFDLILYEGAGAYICGEET 175
>UniRef50_Q56222 Cluster: NADH-quinone oxidoreductase subunit 1;
n=6; Bacteria|Rep: NADH-quinone oxidoreductase subunit 1
- Thermus thermophilus (strain HB8 / ATCC 27634 / DSM
579)
Length = 438
Score = 179 bits (436), Expect = 6e-44
Identities = 86/161 (53%), Positives = 108/161 (67%), Gaps = 1/161 (0%)
Frame = +2
Query: 257 WRLKGALARGDWYLTKEILLKGT-DWIVNEMKTSGLRGRGGAGFPTGMKWSFMNKPSDGR 433
W L L G + K +L + T D ++ E+K SGLRGRGGAGFPTG+KWSFM K DG+
Sbjct: 27 WTLDYYLRHGGYETAKRVLKEKTPDEVIEEVKRSGLRGRGGAGFPTGLKWSFMPK-DDGK 85
Query: 434 PKYLVVNADEGEPGTCKDREIMRHDPHKLVEGCLIAGRAMGAQAAYIYIRGEFYNEASNL 613
YL+ NADE EPG+ KDR I+ PH L+EG ++AG A+ A YIY+RGE+ A L
Sbjct: 86 QHYLICNADESEPGSFKDRYILEDVPHLLIEGMILAGYAIRATVGYIYVRGEYRRAADRL 145
Query: 614 QVAIAEAYQAGLIGKNSCGSGYDFDIFVHRGAGAYICGEXT 736
+ AI EA G +GKN G+ + FD+ VHRGAGAYICGE T
Sbjct: 146 EQAIKEARARGYLGKNLFGTDFSFDLHVHRGAGAYICGEET 186
>UniRef50_P56913 Cluster: NADH-quinone oxidoreductase subunit F 2;
n=100; Proteobacteria|Rep: NADH-quinone oxidoreductase
subunit F 2 - Rhizobium meliloti (Sinorhizobium
meliloti)
Length = 421
Score = 177 bits (431), Expect = 2e-43
Identities = 81/137 (59%), Positives = 102/137 (74%)
Frame = +2
Query: 326 DWIVNEMKTSGLRGRGGAGFPTGMKWSFMNKPSDGRPKYLVVNADEGEPGTCKDREIMRH 505
D IV +K S LRGRGGAGFPTGMKWSF+ K + G+PKYL NADEGEPGT KDR IM
Sbjct: 40 DEIVELVKESNLRGRGGAGFPTGMKWSFVPKAA-GKPKYLCCNADEGEPGTFKDRIIMER 98
Query: 506 DPHKLVEGCLIAGRAMGAQAAYIYIRGEFYNEASNLQVAIAEAYQAGLIGKNSCGSGYDF 685
DPH+L+EG ++ A+GA+ AY+YIRGE+ ++ AIAEA++ G +G GSG++F
Sbjct: 99 DPHQLIEGLAVSAYAIGAETAYVYIRGEYVTAIRRMEQAIAEAHENGYLGIGILGSGFNF 158
Query: 686 DIFVHRGAGAYICGEXT 736
+ +HRGAGAYICGE T
Sbjct: 159 MVHIHRGAGAYICGEET 175
>UniRef50_Q9WY70 Cluster: NADP-reducing hydrogenase, subunit C; n=9;
Bacteria|Rep: NADP-reducing hydrogenase, subunit C -
Thermotoga maritima
Length = 545
Score = 173 bits (421), Expect = 4e-42
Identities = 81/159 (50%), Positives = 110/159 (69%)
Frame = +2
Query: 260 RLKGALARGDWYLTKEILLKGTDWIVNEMKTSGLRGRGGAGFPTGMKWSFMNKPSDGRPK 439
R++ +AR ++ + L I+ E+K SGLRGRGGAGFPTG+KW F K S + K
Sbjct: 124 RIEEYIARDGYFALAKALQMEPGEIIEEIKRSGLRGRGGAGFPTGLKWEFTYKASADQ-K 182
Query: 440 YLVVNADEGEPGTCKDREIMRHDPHKLVEGCLIAGRAMGAQAAYIYIRGEFYNEASNLQV 619
Y++ NADEGEPGT KDR IM DPH L+EG +IAG A+GA YIYIRGE+++ L+
Sbjct: 183 YVLCNADEGEPGTFKDRLIMEGDPHSLIEGMIIAGYAVGATKGYIYIRGEYHSSIEILKK 242
Query: 620 AIAEAYQAGLIGKNSCGSGYDFDIFVHRGAGAYICGEXT 736
A+ +AY+ G +G+N GSG++FD+ + GAGAY+ GE T
Sbjct: 243 AVEQAYEYGFLGENILGSGFNFDLKIRLGAGAYVAGEET 281
>UniRef50_A2DV30 Cluster: Respiratory-chain NADH dehydrogenase 51 Kd
subunit family protein; n=1; Trichomonas vaginalis
G3|Rep: Respiratory-chain NADH dehydrogenase 51 Kd
subunit family protein - Trichomonas vaginalis G3
Length = 425
Score = 173 bits (421), Expect = 4e-42
Identities = 82/172 (47%), Positives = 115/172 (66%)
Frame = +2
Query: 221 DRVFTNLYGRHEWRLKGALARGDWYLTKEILLKGTDWIVNEMKTSGLRGRGGAGFPTGMK 400
DR+FTN+ G E L+ + RGDW T++I+ G +I++E++ S LRGR GAG T K
Sbjct: 15 DRIFTNINGVDESDLQSCMKRGDWNDTQKIIANGKKYILDEVRKSELRGRSGAGLLTYKK 74
Query: 401 WSFMNKPSDGRPKYLVVNADEGEPGTCKDREIMRHDPHKLVEGCLIAGRAMGAQAAYIYI 580
W + S P YL +N +E EPGTCKDR+I++++P K++EG +A A+ Y+Y+
Sbjct: 75 WEEI-LTSKQLPHYLCINGNESEPGTCKDRQILQNEPQKIIEGAFLASYALDVHRCYVYV 133
Query: 581 RGEFYNEASNLQVAIAEAYQAGLIGKNSCGSGYDFDIFVHRGAGAYICGEXT 736
RG + EA LQ+AI EA +A LIGKN+ G+DF+I VH GAGAY+CGE T
Sbjct: 134 RGHYTKEAKRLQLAIDEAKKANLIGKNN-KFGWDFEINVHPGAGAYVCGEQT 184
>UniRef50_A5UVG4 Cluster: NADH-quinone oxidoreductase, F subunit;
n=9; Bacteria|Rep: NADH-quinone oxidoreductase, F
subunit - Roseiflexus sp. RS-1
Length = 449
Score = 169 bits (411), Expect = 6e-41
Identities = 78/135 (57%), Positives = 97/135 (71%)
Frame = +2
Query: 332 IVNEMKTSGLRGRGGAGFPTGMKWSFMNKPSDGRPKYLVVNADEGEPGTCKDREIMRHDP 511
IV +K SGLRGRGGAGFPTG+KW F+ P P+YL+ N DE EPGT + +I+ +P
Sbjct: 61 IVQTVKDSGLRGRGGAGFPTGVKWGFL--PKGVYPRYLLCNCDESEPGTFNNHQIIDRNP 118
Query: 512 HKLVEGCLIAGRAMGAQAAYIYIRGEFYNEASNLQVAIAEAYQAGLIGKNSCGSGYDFDI 691
H+L+EG I+ A+ A AYIYIRGEF A L+ AIA+AY+ G +G+N G GYD DI
Sbjct: 119 HQLIEGIAISAYAIEAHTAYIYIRGEFAAAARRLERAIAQAYERGFLGRNIFGKGYDLDI 178
Query: 692 FVHRGAGAYICGEXT 736
+VHRGAGAYICGE T
Sbjct: 179 YVHRGAGAYICGEET 193
>UniRef50_Q2S5I8 Cluster: Respiratory-chain NADH dehydrogenase 51 Kd
subunit family; n=2; Sphingobacteriales genera incertae
sedis|Rep: Respiratory-chain NADH dehydrogenase 51 Kd
subunit family - Salinibacter ruber (strain DSM 13855)
Length = 464
Score = 168 bits (409), Expect = 1e-40
Identities = 73/135 (54%), Positives = 102/135 (75%)
Frame = +2
Query: 332 IVNEMKTSGLRGRGGAGFPTGMKWSFMNKPSDGRPKYLVVNADEGEPGTCKDREIMRHDP 511
+ +E+K SGL GRGGAGFPTG+KW+FM +P D RP+++ VNADE EPGT KDR++M ++P
Sbjct: 68 VTDEVKASGLTGRGGAGFPTGIKWTFMPEP-DERPRFIGVNADESEPGTFKDRQVMEYNP 126
Query: 512 HKLVEGCLIAGRAMGAQAAYIYIRGEFYNEASNLQVAIAEAYQAGLIGKNSCGSGYDFDI 691
H ++EG L+AG A+ AY+YIRGE+ + +L+ + AY+AG +G+N GS + DI
Sbjct: 127 HLMLEGILLAGYALHIDTAYVYIRGEYTDWIVHLKEQLENAYEAGYVGENIMGSDFTMDI 186
Query: 692 FVHRGAGAYICGEXT 736
+H+GAGAYICGE T
Sbjct: 187 VLHKGAGAYICGEET 201
>UniRef50_Q9I0J7 Cluster: NADH-quinone oxidoreductase subunit F;
n=78; Bacteria|Rep: NADH-quinone oxidoreductase subunit
F - Pseudomonas aeruginosa
Length = 448
Score = 167 bits (407), Expect = 2e-40
Identities = 81/145 (55%), Positives = 98/145 (67%)
Frame = +2
Query: 302 KEILLKGTDWIVNEMKTSGLRGRGGAGFPTGMKWSFMNKPSDGRPKYLVVNADEGEPGTC 481
K + D IV +K SGL+GRGGAGFPTG+KW M K +YL+ NADE EP T
Sbjct: 48 KALTQMAQDDIVQTVKDSGLKGRGGAGFPTGVKWGLMPKDESLNIRYLLCNADEMEPNTW 107
Query: 482 KDREIMRHDPHKLVEGCLIAGRAMGAQAAYIYIRGEFYNEASNLQVAIAEAYQAGLIGKN 661
KDR +M PH LVEG LI+ RA+ A YI++RGE+ + A NL AI EA AGL+GKN
Sbjct: 108 KDRMLMEQLPHLLVEGMLISARALKAYRGYIFLRGEYVDAARNLNRAIDEAKAAGLLGKN 167
Query: 662 SCGSGYDFDIFVHRGAGAYICGEXT 736
GSG+DF++FVH GAG YICGE T
Sbjct: 168 ILGSGFDFELFVHTGAGRYICGEET 192
>UniRef50_A7CUG0 Cluster: NADH dehydrogenase; n=1; Opitutaceae
bacterium TAV2|Rep: NADH dehydrogenase - Opitutaceae
bacterium TAV2
Length = 478
Score = 165 bits (400), Expect = 1e-39
Identities = 79/154 (51%), Positives = 105/154 (68%)
Frame = +2
Query: 275 LARGDWYLTKEILLKGTDWIVNEMKTSGLRGRGGAGFPTGMKWSFMNKPSDGRPKYLVVN 454
L G + + K + + + + +E+K SG+RGRGGAGFP G+KW +++ S G+P YL+VN
Sbjct: 41 LRNGGYEILKRAVARKPEDLRDEVKKSGIRGRGGAGFPCGVKWGLVDRKS-GKPIYLIVN 99
Query: 455 ADEGEPGTCKDREIMRHDPHKLVEGCLIAGRAMGAQAAYIYIRGEFYNEASNLQVAIAEA 634
ADE EPGT KDR I+ DPH+L+EG +I+ A + AYIYIRGE A L+ AIAEA
Sbjct: 100 ADESEPGTFKDRYIIHQDPHQLIEGTIISCFANDVKQAYIYIRGEMPEGARILERAIAEA 159
Query: 635 YQAGLIGKNSCGSGYDFDIFVHRGAGAYICGEXT 736
+G N G+GY +I+VHRGAGAYICGE T
Sbjct: 160 RAKNFVGPNILGTGYSCEIYVHRGAGAYICGEET 193
>UniRef50_Q9XAQ9 Cluster: NADH-quinone oxidoreductase subunit F;
n=32; Bacteria|Rep: NADH-quinone oxidoreductase subunit
F - Streptomyces coelicolor
Length = 449
Score = 164 bits (399), Expect = 2e-39
Identities = 78/145 (53%), Positives = 99/145 (68%)
Frame = +2
Query: 302 KEILLKGTDWIVNEMKTSGLRGRGGAGFPTGMKWSFMNKPSDGRPKYLVVNADEGEPGTC 481
++ L D ++ +K SGLRGRGGAGFPTGMKW F+ + DG+P YLVVNADE EPGTC
Sbjct: 46 RKALAMAPDDLIAYVKESGLRGRGGAGFPTGMKWQFIPQ-GDGKPHYLVVNADESEPGTC 104
Query: 482 KDREIMRHDPHKLVEGCLIAGRAMGAQAAYIYIRGEFYNEASNLQVAIAEAYQAGLIGKN 661
KD ++ +PH L+EG +IA A+ + A+IY+RGE L A+ EAY AG +G+N
Sbjct: 105 KDIPLLFANPHSLIEGIVIACYAIRSSHAFIYLRGEVVPVLRRLHEAVREAYAAGFLGEN 164
Query: 662 SCGSGYDFDIFVHRGAGAYICGEXT 736
GSG D + VH GAGAYICGE T
Sbjct: 165 ILGSGLDLTLTVHAGAGAYICGEET 189
>UniRef50_A6FCN1 Cluster: NuoF2 NADH I CHAIN F; n=1; Moritella sp.
PE36|Rep: NuoF2 NADH I CHAIN F - Moritella sp. PE36
Length = 425
Score = 163 bits (396), Expect = 4e-39
Identities = 77/147 (52%), Positives = 100/147 (68%)
Frame = +2
Query: 296 LTKEILLKGTDWIVNEMKTSGLRGRGGAGFPTGMKWSFMNKPSDGRPKYLVVNADEGEPG 475
L K + D +++ +K S LRGRGGAGFPTG+KWSF+ K DG+ YL NADEGEPG
Sbjct: 30 LKKILTTYSPDKVIDAVKASNLRGRGGAGFPTGLKWSFVPK-DDGKIHYLCCNADEGEPG 88
Query: 476 TCKDREIMRHDPHKLVEGCLIAGRAMGAQAAYIYIRGEFYNEASNLQVAIAEAYQAGLIG 655
T KDR +M DPH+++EG +IA A+ A+ AYIYIRGE+ + AI AY G +G
Sbjct: 89 TFKDRLLMERDPHRVIEGMIIAAYAIRAEVAYIYIRGEYGLSIDMITQAIKAAYAKGYLG 148
Query: 656 KNSCGSGYDFDIFVHRGAGAYICGEXT 736
KN + + +I+VH+GAGAYICGE T
Sbjct: 149 KNIFNTDFCLNIYVHKGAGAYICGEET 175
>UniRef50_Q2LYA9 Cluster: NADH:ubiquinone oxidoreductase,
NADH-binding subunit; n=3; cellular organisms|Rep:
NADH:ubiquinone oxidoreductase, NADH-binding subunit -
Syntrophus aciditrophicus (strain SB)
Length = 637
Score = 162 bits (393), Expect = 9e-39
Identities = 74/155 (47%), Positives = 105/155 (67%), Gaps = 1/155 (0%)
Frame = +2
Query: 275 LARGDWY-LTKEILLKGTDWIVNEMKTSGLRGRGGAGFPTGMKWSFMNKPSDGRPKYLVV 451
+ARG + L K + + ++ E+KTSGLRGRGG GFPTG KW + ++G KY++
Sbjct: 175 IARGGYTALHKALTTMSPEDVILEVKTSGLRGRGGGGFPTGTKWESCRR-AEGEIKYVIC 233
Query: 452 NADEGEPGTCKDREIMRHDPHKLVEGCLIAGRAMGAQAAYIYIRGEFYNEASNLQVAIAE 631
N DEG+PG DR +M DPH ++EG +I A+GA YIY+R E+ +NLQ AI +
Sbjct: 234 NGDEGDPGAYMDRSLMEGDPHSVLEGMIIGAYAIGAHEGYIYVRNEYPLAVANLQHAIGQ 293
Query: 632 AYQAGLIGKNSCGSGYDFDIFVHRGAGAYICGEXT 736
A +AGL+GKN G+G++FDI + +GAGA++CGE T
Sbjct: 294 AREAGLLGKNILGTGFEFDIKIAKGAGAFVCGEST 328
>UniRef50_Q7XZ61 Cluster: NADH dehydrogenase; n=1; Griffithsia
japonica|Rep: NADH dehydrogenase - Griffithsia japonica
(Red alga)
Length = 170
Score = 162 bits (393), Expect = 9e-39
Identities = 73/117 (62%), Positives = 91/117 (77%), Gaps = 2/117 (1%)
Frame = +2
Query: 200 YGPLADSDRVFTNLYGRHEWRLKGALARGDWYLTKEILLKGTDWIVNEMKTSGLRGRGGA 379
+G L+D DR+FTNLY +WRLKGA+ RGDW++TK+++ G WI++E+K R GA
Sbjct: 54 HGGLSDKDRIFTNLYRDGDWRLKGAMKRGDWHMTKDLVQMGRSWILSEIKAVRPARRAGA 113
Query: 380 -GFPTGMKWSFMNKPS-DGRPKYLVVNADEGEPGTCKDREIMRHDPHKLVEGCLIAG 544
GFP+G+K+SFM S DGRP YLVVNADE EPGTCKDREI+R DPHKLVEGCL+ G
Sbjct: 114 PGFPSGLKYSFMPDGSPDGRPNYLVVNADESEPGTCKDREILRSDPHKLVEGCLLVG 170
>UniRef50_Q2LS97 Cluster: NADH-quinone oxidoreductase chain F; n=2;
Syntrophus aciditrophicus SB|Rep: NADH-quinone
oxidoreductase chain F - Syntrophus aciditrophicus
(strain SB)
Length = 638
Score = 159 bits (386), Expect = 7e-38
Identities = 76/153 (49%), Positives = 100/153 (65%), Gaps = 1/153 (0%)
Frame = +2
Query: 275 LARGDWYLTKEILLK-GTDWIVNEMKTSGLRGRGGAGFPTGMKWSFMNKPSDGRPKYLVV 451
L +G + K+ L + D ++ +K SGLRGRGGAGFP G+KWSF+ P KY++
Sbjct: 229 LEKGGYAAIKKALAEYQPDDVIAIVKDSGLRGRGGAGFPAGVKWSFL--PKGDMQKYVIC 286
Query: 452 NADEGEPGTCKDREIMRHDPHKLVEGCLIAGRAMGAQAAYIYIRGEFYNEASNLQVAIAE 631
NADEGEPGT KDR +M +PH L+EG ++ G A GA YIYIRGE+ LQ AI +
Sbjct: 287 NADEGEPGTYKDRILMEENPHGLLEGMMLCGYATGATVGYIYIRGEYRRSIERLQRAIDQ 346
Query: 632 AYQAGLIGKNSCGSGYDFDIFVHRGAGAYICGE 730
A + G++G N GS + FDIF+ G GAY+CGE
Sbjct: 347 AREKGILGDNIFGSSFRFDIFIKEGGGAYVCGE 379
>UniRef50_Q8RBC9 Cluster: NADH:ubiquinone oxidoreductase,
NADH-binding (51 kD) subunit; n=11; Bacteria|Rep:
NADH:ubiquinone oxidoreductase, NADH-binding (51 kD)
subunit - Thermoanaerobacter tengcongensis
Length = 596
Score = 159 bits (385), Expect = 9e-38
Identities = 74/159 (46%), Positives = 106/159 (66%), Gaps = 1/159 (0%)
Frame = +2
Query: 263 LKGALARGDWYLTKEILLKGT-DWIVNEMKTSGLRGRGGAGFPTGMKWSFMNKPSDGRPK 439
++ A+A + ++L + T + ++ E+K SGLRGRGG GFPTG+KW F K + PK
Sbjct: 130 IREAIAFDGYKALAKVLTEMTPEQVIEEVKKSGLRGRGGGGFPTGVKWEFAYKQKE-TPK 188
Query: 440 YLVVNADEGEPGTCKDREIMRHDPHKLVEGCLIAGRAMGAQAAYIYIRGEFYNEASNLQV 619
Y+V NADEG+PG DR I+ DPH ++E IAG A+GA YIY+R E+ L++
Sbjct: 189 YVVCNADEGDPGAFMDRSILEGDPHSVLEAMAIAGYAIGANHGYIYVRAEYPLAVKRLKI 248
Query: 620 AIAEAYQAGLIGKNSCGSGYDFDIFVHRGAGAYICGEXT 736
AI +A + GL+GK+ G+G+DFDI + GAGA++CGE T
Sbjct: 249 AIQQAREYGLLGKDIFGTGFDFDIEIRLGAGAFVCGEET 287
>UniRef50_Q2AG83 Cluster: 4Fe-4S ferredoxin, iron-sulfur
binding:Respiratory-chain NADH dehydrogenase domain, 51
kDa subunit; n=4; Bacteria|Rep: 4Fe-4S ferredoxin,
iron-sulfur binding:Respiratory-chain NADH dehydrogenase
domain, 51 kDa subunit - Halothermothrix orenii H 168
Length = 632
Score = 158 bits (384), Expect = 1e-37
Identities = 82/189 (43%), Positives = 115/189 (60%), Gaps = 3/189 (1%)
Frame = +2
Query: 179 QAPSKDKYGPL-ADSDRVFTNLYGRHEWR-LKGALARGDWY-LTKEILLKGTDWIVNEMK 349
+A S +K P A+ +R+ + G + L LA G + L+K +L + + E+
Sbjct: 136 EAYSNEKEIPFYANQNRIALSNCGNIDPEDLDDYLAHGGYKALSKALLEMSPEEVCKEVT 195
Query: 350 TSGLRGRGGAGFPTGMKWSFMNKPSDGRPKYLVVNADEGEPGTCKDREIMRHDPHKLVEG 529
SGLRGRGG GFPTG KW F + + KY++VN DEG+PG DR IM DPH+++EG
Sbjct: 196 ESGLRGRGGGGFPTGKKWEFAYREKADQ-KYVIVNGDEGDPGAFMDRSIMEGDPHRVIEG 254
Query: 530 CLIAGRAMGAQAAYIYIRGEFYNEASNLQVAIAEAYQAGLIGKNSCGSGYDFDIFVHRGA 709
IAG A GA YIY+R E+ L+ AI +AY GL+G++ GSG+DFD+ + GA
Sbjct: 255 ITIAGYATGATKGYIYVRAEYPLAVKRLRKAINDAYDQGLLGEDILGSGFDFDLMIKEGA 314
Query: 710 GAYICGEXT 736
GA++CGE T
Sbjct: 315 GAFVCGEET 323
>UniRef50_Q2C5T6 Cluster: NADH dehydrogenase I, F subunit; n=2;
Vibrionaceae|Rep: NADH dehydrogenase I, F subunit -
Photobacterium sp. SKA34
Length = 427
Score = 156 bits (379), Expect = 5e-37
Identities = 71/151 (47%), Positives = 100/151 (66%)
Frame = +2
Query: 284 GDWYLTKEILLKGTDWIVNEMKTSGLRGRGGAGFPTGMKWSFMNKPSDGRPKYLVVNADE 463
G + I+ + + ++ E+K SGLRG GG GFPTG+KW F+ K + P YLVVN DE
Sbjct: 24 GGYQSLNSIIGQPREPLLAELKASGLRGCGGGGFPTGVKWGFLAKDAS-HPVYLVVNLDE 82
Query: 464 GEPGTCKDREIMRHDPHKLVEGCLIAGRAMGAQAAYIYIRGEFYNEASNLQVAIAEAYQA 643
EPG+ KDR+++ DPH ++EG + + +GA A+++IRGE+ A L+ A+ EA A
Sbjct: 83 SEPGSFKDRQVLYRDPHTILEGVIASSYILGADKAFVFIRGEYREGAKGLEKAVQEARAA 142
Query: 644 GLIGKNSCGSGYDFDIFVHRGAGAYICGEXT 736
GL+G+N GSG+D D+ VH AG YICGE T
Sbjct: 143 GLVGENVMGSGWDLDVDVHLSAGRYICGEET 173
>UniRef50_A4MHV7 Cluster: NADH dehydrogenase; n=5; Bacteria|Rep:
NADH dehydrogenase - Geobacter bemidjiensis Bem
Length = 593
Score = 156 bits (378), Expect = 6e-37
Identities = 69/135 (51%), Positives = 93/135 (68%)
Frame = +2
Query: 332 IVNEMKTSGLRGRGGAGFPTGMKWSFMNKPSDGRPKYLVVNADEGEPGTCKDREIMRHDP 511
+++E+K SGLRGRGG GFPTGMKWSF S G KYL+ NADEG+PG DR I+ DP
Sbjct: 153 VIDEVKKSGLRGRGGGGFPTGMKWSFC-AASPGNHKYLICNADEGDPGAFMDRSILEGDP 211
Query: 512 HKLVEGCLIAGRAMGAQAAYIYIRGEFYNEASNLQVAIAEAYQAGLIGKNSCGSGYDFDI 691
+ ++EG +IA A+G A Y+Y+R E+ LQ A+ Y+ G +GKN G G+DFD+
Sbjct: 212 YCVIEGMMIAAYAIGCDAGYVYVRAEYPLAIDRLQKALDTCYEKGYLGKNIQGWGFDFDM 271
Query: 692 FVHRGAGAYICGEXT 736
+ +GAGA++CGE T
Sbjct: 272 RIKKGAGAFVCGEET 286
>UniRef50_O66841 Cluster: NADH-quinone oxidoreductase subunit F;
n=2; Aquifex aeolicus|Rep: NADH-quinone oxidoreductase
subunit F - Aquifex aeolicus
Length = 426
Score = 155 bits (377), Expect = 8e-37
Identities = 79/155 (50%), Positives = 101/155 (65%), Gaps = 1/155 (0%)
Frame = +2
Query: 275 LARGDWYLTKEILLKGTDWIVNEMKTSGLRGRGGAGFPTGMKWSF-MNKPSDGRPKYLVV 451
L G + ++ L + I++ + S LRGRGGAGFPTG KW F + P P+Y +
Sbjct: 35 LKDGGYQALEKALNMSPEEIIDWVDKSTLRGRGGAGFPTGKKWKFAVQNPG---PRYFIC 91
Query: 452 NADEGEPGTCKDREIMRHDPHKLVEGCLIAGRAMGAQAAYIYIRGEFYNEASNLQVAIAE 631
NADE EPGT KDR I+ DPH L+EG +I+ A+GA AYIYIRGE+ L+ AI E
Sbjct: 92 NADESEPGTFKDRIIIERDPHLLIEGIIISSYAIGANEAYIYIRGEYPAGYYILRDAIEE 151
Query: 632 AYQAGLIGKNSCGSGYDFDIFVHRGAGAYICGEXT 736
A + G +GKN GSG+D +I+V RGAGAYICGE T
Sbjct: 152 AKKKGFLGKNILGSGFDLEIYVARGAGAYICGEET 186
>UniRef50_Q2LQE7 Cluster: NADH-quinone oxidoreductase chain F; n=1;
Syntrophus aciditrophicus SB|Rep: NADH-quinone
oxidoreductase chain F - Syntrophus aciditrophicus
(strain SB)
Length = 574
Score = 155 bits (375), Expect = 1e-36
Identities = 77/135 (57%), Positives = 95/135 (70%)
Frame = +2
Query: 332 IVNEMKTSGLRGRGGAGFPTGMKWSFMNKPSDGRPKYLVVNADEGEPGTCKDREIMRHDP 511
I+ E+K + LRGRGGAGFP G+KW F+ K +D +P YL+ NADEGEPGT KDR+IM +DP
Sbjct: 211 ILEEVKKANLRGRGGAGFPAGVKWGFIPKDTD-KPVYLICNADEGEPGTYKDRQIMEYDP 269
Query: 512 HKLVEGCLIAGRAMGAQAAYIYIRGEFYNEASNLQVAIAEAYQAGLIGKNSCGSGYDFDI 691
H L+EG IA RA+GA+ A+IYIRGEF A L+ AI EA G + + DI
Sbjct: 270 HLLIEGMAIAARAIGARQAFIYIRGEFAWIADILEKAIGEAKADGQLS--------ELDI 321
Query: 692 FVHRGAGAYICGEXT 736
VHRGAGAY+CGE T
Sbjct: 322 IVHRGAGAYVCGEET 336
>UniRef50_A1ALP4 Cluster: NADH dehydrogenase; n=1; Pelobacter
propionicus DSM 2379|Rep: NADH dehydrogenase -
Pelobacter propionicus (strain DSM 2379)
Length = 427
Score = 154 bits (374), Expect = 2e-36
Identities = 83/174 (47%), Positives = 108/174 (62%), Gaps = 3/174 (1%)
Frame = +2
Query: 218 SDRVFTNL-YGRHEWRLKGALARGDWYLTKEIL--LKGTDWIVNEMKTSGLRGRGGAGFP 388
S+R+F N LK RG + + L L+ D + E+ SGLRGRGGAGFP
Sbjct: 3 SERIFFNFPVTADSHTLKAYQGRGGYQALENALKTLQPID-VEKEVMASGLRGRGGAGFP 61
Query: 389 TGMKWSFMNKPSDGRPKYLVVNADEGEPGTCKDREIMRHDPHKLVEGCLIAGRAMGAQAA 568
TG KWSF+NK + YL NADEGEPGT KDR I H+ H+L+EG ++A A+ + A
Sbjct: 62 TGSKWSFVNKKAP--VVYLCCNADEGEPGTFKDRWIFEHNSHQLIEGMILAAYALNVRNA 119
Query: 569 YIYIRGEFYNEASNLQVAIAEAYQAGLIGKNSCGSGYDFDIFVHRGAGAYICGE 730
+IYIRGEF L A++EAY+AG +G+N GS + DI V +G GAY+CGE
Sbjct: 120 FIYIRGEFDLSFRRLMDAMSEAYKAGYLGENILGSSFSCDIRVMQGGGAYVCGE 173
>UniRef50_O27592 Cluster: NADP-reducing hydrogenase, subunit C; n=4;
cellular organisms|Rep: NADP-reducing hydrogenase,
subunit C - Methanobacterium thermoautotrophicum
Length = 630
Score = 152 bits (369), Expect = 7e-36
Identities = 74/154 (48%), Positives = 99/154 (64%)
Frame = +2
Query: 275 LARGDWYLTKEILLKGTDWIVNEMKTSGLRGRGGAGFPTGMKWSFMNKPSDGRPKYLVVN 454
LA G + L D ++ E+K SGLRGRGGAGFPT +KWS + + KYL+ N
Sbjct: 152 LATGGYRGLMRALEMEPDEVIEEVKDSGLRGRGGAGFPTWLKWSLCRQEAS-EVKYLICN 210
Query: 455 ADEGEPGTCKDREIMRHDPHKLVEGCLIAGRAMGAQAAYIYIRGEFYNEASNLQVAIAEA 634
ADEG+PG +R ++ DPH L+EG LIA A+GA+ AYIY R E+ L+VAI++
Sbjct: 211 ADEGDPGAFMNRSLIEGDPHALLEGILIASYAVGAREAYIYCRAEYPLALERLRVAISDL 270
Query: 635 YQAGLIGKNSCGSGYDFDIFVHRGAGAYICGEXT 736
GL+GK+ GSG+D DI + GAGA++CGE T
Sbjct: 271 RNLGLLGKDILGSGFDLDIKIKEGAGAFVCGEET 304
>UniRef50_Q6AQG1 Cluster: Probable NADP-reducing hydrogenase, 51 kDa
subunit; n=1; Desulfotalea psychrophila|Rep: Probable
NADP-reducing hydrogenase, 51 kDa subunit - Desulfotalea
psychrophila
Length = 634
Score = 147 bits (357), Expect = 2e-34
Identities = 70/151 (46%), Positives = 96/151 (63%), Gaps = 1/151 (0%)
Frame = +2
Query: 287 DWYLTKE-ILLKGTDWIVNEMKTSGLRGRGGAGFPTGMKWSFMNKPSDGRPKYLVVNADE 463
D YL E L +G D ++ E+K S LRGRGG GFP KW K + G PKY+V NADE
Sbjct: 166 DGYLALEKSLQEGPDMVLTEIKKSALRGRGGGGFPAARKWEAGRKAT-GHPKYVVCNADE 224
Query: 464 GEPGTCKDREIMRHDPHKLVEGCLIAGRAMGAQAAYIYIRGEFYNEASNLQVAIAEAYQA 643
G+PG DR ++ DPH ++EG IAG +G++ YIY+R E+ + LQ AI +A +
Sbjct: 225 GDPGAFMDRSVLEGDPHAVLEGMAIAGLTIGSEKGYIYVRAEYPLAIARLQNAIDQAKEK 284
Query: 644 GLIGKNSCGSGYDFDIFVHRGAGAYICGEXT 736
L+G N G+ + FDI + +GAGA++CGE T
Sbjct: 285 NLLGANILGTDFSFDIELFQGAGAFVCGEST 315
>UniRef50_Q746S7 Cluster: NADH dehydrogenase I, F subunit; n=7;
Deltaproteobacteria|Rep: NADH dehydrogenase I, F subunit
- Geobacter sulfurreducens
Length = 423
Score = 146 bits (353), Expect = 6e-34
Identities = 69/128 (53%), Positives = 89/128 (69%)
Frame = +2
Query: 353 SGLRGRGGAGFPTGMKWSFMNKPSDGRPKYLVVNADEGEPGTCKDREIMRHDPHKLVEGC 532
+ LRGRGGAGFPTG KWSF+ + G P+YL+ N DE EPGT KDR ++ +P+ LVEG
Sbjct: 48 ANLRGRGGAGFPTGKKWSFVPRDIPG-PRYLICNCDEMEPGTYKDRILLEANPYSLVEGM 106
Query: 533 LIAGRAMGAQAAYIYIRGEFYNEASNLQVAIAEAYQAGLIGKNSCGSGYDFDIFVHRGAG 712
+A A+G A+I+IR + A N + AIAEA +AGL+GKN GSG+ D+ VH+ AG
Sbjct: 107 TLAAYAIGVAHAFIFIRRGYEEAAENCRRAIAEAKEAGLLGKNILGSGFSLDLDVHQSAG 166
Query: 713 AYICGEXT 736
YICGE T
Sbjct: 167 RYICGEET 174
>UniRef50_Q2AFM4 Cluster: Respiratory-chain NADH dehydrogenase
domain, 51 kDa subunit; n=2; Bacteria|Rep:
Respiratory-chain NADH dehydrogenase domain, 51 kDa
subunit - Halothermothrix orenii H 168
Length = 408
Score = 146 bits (353), Expect = 6e-34
Identities = 67/135 (49%), Positives = 89/135 (65%)
Frame = +2
Query: 332 IVNEMKTSGLRGRGGAGFPTGMKWSFMNKPSDGRPKYLVVNADEGEPGTCKDREIMRHDP 511
I+ E+K SGLRGRGGAGFPTG+KW K G KY++ N DEGEPGT KDR ++ + P
Sbjct: 34 IIEELKKSGLRGRGGAGFPTGLKWELALKEKAGE-KYIICNGDEGEPGTFKDRYLLENSP 92
Query: 512 HKLVEGCLIAGRAMGAQAAYIYIRGEFYNEASNLQVAIAEAYQAGLIGKNSCGSGYDFDI 691
K++EG LI +GA YIYIRGE+ + + I EA + G++G GS Y FD+
Sbjct: 93 LKVLEGILIGAYTIGAHQGYIYIRGEYALPINIFRQVIKEAKKRGILGNRVMGSDYSFDL 152
Query: 692 FVHRGAGAYICGEXT 736
+ +GAGAY+CG+ T
Sbjct: 153 KLIKGAGAYVCGDET 167
>UniRef50_Q9ZBV8 Cluster: Putative respiratory chain oxidoreductase;
n=2; Streptomyces|Rep: Putative respiratory chain
oxidoreductase - Streptomyces coelicolor
Length = 646
Score = 144 bits (350), Expect = 2e-33
Identities = 73/153 (47%), Positives = 89/153 (58%)
Frame = +2
Query: 278 ARGDWYLTKEILLKGTDWIVNEMKTSGLRGRGGAGFPTGMKWSFMNKPSDGRPKYLVVNA 457
A G + + G ++ E+ +GL GRGGA FPTG KW D P YLV NA
Sbjct: 263 AHGGYTALRRAFALGPAAVIREVTDAGLVGRGGAAFPTGRKWQATAAQPD-HPHYLVCNA 321
Query: 458 DEGEPGTCKDREIMRHDPHKLVEGCLIAGRAMGAQAAYIYIRGEFYNEASNLQVAIAEAY 637
DE EPGT KDR +M DP+ LVE IA A GA Y+Y+RGE+ + L AI +A
Sbjct: 322 DESEPGTFKDRVLMEGDPYALVEAMTIAAYATGAHRGYLYLRGEYPRALARLTHAIEQAR 381
Query: 638 QAGLIGKNSCGSGYDFDIFVHRGAGAYICGEXT 736
GL+G + G GY FDI + RGAGAYICGE T
Sbjct: 382 TRGLLGDDVLGQGYAFDIEIRRGAGAYICGEET 414
>UniRef50_Q3A639 Cluster: NADH:ubiquinone oxidoreductase,
NADH-binding (51 kD) subunit; n=1; Pelobacter
carbinolicus DSM 2380|Rep: NADH:ubiquinone
oxidoreductase, NADH-binding (51 kD) subunit -
Pelobacter carbinolicus (strain DSM 2380 / Gra Bd 1)
Length = 571
Score = 144 bits (349), Expect = 2e-33
Identities = 66/145 (45%), Positives = 91/145 (62%)
Frame = +2
Query: 302 KEILLKGTDWIVNEMKTSGLRGRGGAGFPTGMKWSFMNKPSDGRPKYLVVNADEGEPGTC 481
K + ++ ++NE SGLRGRGGAGFP G+KW F + KY++ NADEG+PG
Sbjct: 183 KALTEMSSEEVINEAIGSGLRGRGGAGFPIGLKWKFAAAEKNDI-KYILCNADEGDPGAF 241
Query: 482 KDREIMRHDPHKLVEGCLIAGRAMGAQAAYIYIRGEFYNEASNLQVAIAEAYQAGLIGKN 661
DR +M DPH ++EG +I +A+GA YIY R E+ L AI +A L+G+N
Sbjct: 242 MDRNVMESDPHSIIEGLIIGAKAIGAHQGYIYCRAEYPLAIETLNKAINQARALDLLGEN 301
Query: 662 SCGSGYDFDIFVHRGAGAYICGEXT 736
G+G+ FDI V+ GAGA++CGE T
Sbjct: 302 ILGTGFSFDISVYEGAGAFVCGEET 326
>UniRef50_Q7WMR8 Cluster: NAD-dependent formate dehydrogenase beta
subunit; n=107; Bacteria|Rep: NAD-dependent formate
dehydrogenase beta subunit - Bordetella bronchiseptica
(Alcaligenes bronchisepticus)
Length = 526
Score = 144 bits (348), Expect = 3e-33
Identities = 72/142 (50%), Positives = 92/142 (64%)
Frame = +2
Query: 311 LLKGTDWIVNEMKTSGLRGRGGAGFPTGMKWSFMNKPSDGRPKYLVVNADEGEPGTCKDR 490
L + IV+E+ SGLRGRGGA FPTG+KW + R KY+V NADEG+ GT DR
Sbjct: 140 LAMSAEQIVDEVSASGLRGRGGAAFPTGIKWKTVLTTPAPR-KYIVCNADEGDSGTFADR 198
Query: 491 EIMRHDPHKLVEGCLIAGRAMGAQAAYIYIRGEFYNEASNLQVAIAEAYQAGLIGKNSCG 670
+M DP+ L+EG IAG A+GA YIY+R E+ + + L+ AIA A + G +G + G
Sbjct: 199 LLMEGDPYSLIEGMTIAGLAVGATYGYIYVRSEYPHAIATLRQAIARAREVGWLGDDIHG 258
Query: 671 SGYDFDIFVHRGAGAYICGEXT 736
SG FD+ V GAGAYICGE T
Sbjct: 259 SGQRFDLEVREGAGAYICGEET 280
>UniRef50_A3ETZ6 Cluster: NADH ubiquinone oxidoreductase; n=1;
Leptospirillum sp. Group II UBA|Rep: NADH ubiquinone
oxidoreductase - Leptospirillum sp. Group II UBA
Length = 627
Score = 142 bits (344), Expect = 8e-33
Identities = 82/179 (45%), Positives = 103/179 (57%), Gaps = 2/179 (1%)
Frame = +2
Query: 206 PLADSDRVFTNLYGRHEWRLKGALARGDWYLTKEILLKGTDW--IVNEMKTSGLRGRGGA 379
PLA+ VFT L E R Y E LLK D +++ SG+ GRGG
Sbjct: 174 PLANEPVVFTGLRSG-ETRYLERYREDHGYRALEGLLKTGDAEAAFEQIRLSGVAGRGGG 232
Query: 380 GFPTGMKWSFMNKPSDGRPKYLVVNADEGEPGTCKDREIMRHDPHKLVEGCLIAGRAMGA 559
FP K + K + P+YLV NADEGEPGT KDR IM DPH L+EG IA R +GA
Sbjct: 233 AFPMYRKLDAVRK--NPPPRYLVCNADEGEPGTFKDRYIMERDPHSLIEGMAIAARIIGA 290
Query: 560 QAAYIYIRGEFYNEASNLQVAIAEAYQAGLIGKNSCGSGYDFDIFVHRGAGAYICGEXT 736
+ +IY+R E+ + L+ AIAEA AGL+G GS + F + ++RGAGAYICGE T
Sbjct: 291 EEGFIYLRSEYPHSFHILEKAIAEARSAGLLGPRILGSDFSFRLRLYRGAGAYICGEET 349
>UniRef50_A5FSK8 Cluster: NADH dehydrogenase; n=3;
Dehalococcoides|Rep: NADH dehydrogenase -
Dehalococcoides sp. BAV1
Length = 417
Score = 141 bits (342), Expect = 1e-32
Identities = 69/154 (44%), Positives = 94/154 (61%)
Frame = +2
Query: 275 LARGDWYLTKEILLKGTDWIVNEMKTSGLRGRGGAGFPTGMKWSFMNKPSDGRPKYLVVN 454
LA G + K+ L + ++ E+K S L GRGGA FPTG+KW K PKY+V N
Sbjct: 23 LADGGYQALKKALSMTPEEVIAEVKRSKLVGRGGAAFPTGLKWELTRKEK-ANPKYIVCN 81
Query: 455 ADEGEPGTCKDREIMRHDPHKLVEGCLIAGRAMGAQAAYIYIRGEFYNEASNLQVAIAEA 634
A EGEPGT KDR I+++DPH ++EG +IA A+G +I+ R + E Q AI +A
Sbjct: 82 ASEGEPGTFKDRLILKNDPHMVLEGFIIAAYAVGTSQGFIHAREVYTQEIELFQKAIDQA 141
Query: 635 YQAGLIGKNSCGSGYDFDIFVHRGAGAYICGEXT 736
+ G +G+N GS + DI ++ AGAYICGE T
Sbjct: 142 TERGFLGQNIMGSNFSLDIQFYKSAGAYICGEET 175
>UniRef50_Q8ABI5 Cluster: NADH:ubiquinone oxidoreductase subunit;
n=91; cellular organisms|Rep: NADH:ubiquinone
oxidoreductase subunit - Bacteroides thetaiotaomicron
Length = 635
Score = 140 bits (338), Expect = 4e-32
Identities = 68/155 (43%), Positives = 97/155 (62%), Gaps = 1/155 (0%)
Frame = +2
Query: 275 LARGDWYLTKEILL-KGTDWIVNEMKTSGLRGRGGAGFPTGMKWSFMNKPSDGRPKYLVV 451
+AR ++ + LL K +++ +K SGLRGRGG GFPTG+KW F +K KY+V
Sbjct: 173 IAREGYFALADCLLNKQPADVIDIIKRSGLRGRGGGGFPTGLKWEFASKQVSN-VKYVVC 231
Query: 452 NADEGEPGTCKDREIMRHDPHKLVEGCLIAGRAMGAQAAYIYIRGEFYNEASNLQVAIAE 631
NADEG+PG DR IM DPH +VE I G ++G+ +YIR E+ + L+ AI +
Sbjct: 232 NADEGDPGAFMDRSIMEGDPHSIVEAMCICGYSIGSSKGLVYIRAEYPLAINRLKKAIEQ 291
Query: 632 AYQAGLIGKNSCGSGYDFDIFVHRGAGAYICGEXT 736
A + GL+G + G+ + FDI + GAGA++CGE T
Sbjct: 292 AREYGLLGDHILGTDFSFDIEIRYGAGAFVCGEET 326
>UniRef50_Q6MDR1 Cluster: Probable NADH-ubiquinone oxidoreductase
chain F; n=1; Candidatus Protochlamydia amoebophila
UWE25|Rep: Probable NADH-ubiquinone oxidoreductase chain
F - Protochlamydia amoebophila (strain UWE25)
Length = 432
Score = 140 bits (338), Expect = 4e-32
Identities = 71/147 (48%), Positives = 93/147 (63%)
Frame = +2
Query: 296 LTKEILLKGTDWIVNEMKTSGLRGRGGAGFPTGMKWSFMNKPSDGRPKYLVVNADEGEPG 475
L K I +D ++ +K S LRGRGG GF TG+KWSF+ K KYLV N DE EPG
Sbjct: 31 LKKAISSISSDQLIEMVKQSWLRGRGGGGFQTGLKWSFVPKDCQ-ISKYLVCNCDESEPG 89
Query: 476 TCKDREIMRHDPHKLVEGCLIAGRAMGAQAAYIYIRGEFYNEASNLQVAIAEAYQAGLIG 655
T KDR I+ +DPH+L+EG ++A A+GA+ A+IY RGEF+ L++AI EA + G +
Sbjct: 90 TFKDRYIIENDPHQLIEGIILACYAIGAKQAFIYCRGEFFEGNKKLRLAIQEAKKRGYLE 149
Query: 656 KNSCGSGYDFDIFVHRGAGAYICGEXT 736
+ + I VH GAGAYI GE T
Sbjct: 150 APLGEANFSVSIIVHPGAGAYIAGEET 176
>UniRef50_P74024 Cluster: Hydrogenase subunit; n=13; Bacteria|Rep:
Hydrogenase subunit - Synechocystis sp. (strain PCC
6803)
Length = 533
Score = 138 bits (335), Expect = 1e-31
Identities = 64/135 (47%), Positives = 88/135 (65%)
Frame = +2
Query: 332 IVNEMKTSGLRGRGGAGFPTGMKWSFMNKPSDGRPKYLVVNADEGEPGTCKDREIMRHDP 511
++ EM SGLRGRGG G+PTG+KW+ + K G+ KY++ NADEG+PG DR ++ DP
Sbjct: 160 VIVEMNKSGLRGRGGGGYPTGLKWATVAK-MPGQQKYVICNADEGDPGAFMDRSVLESDP 218
Query: 512 HKLVEGCLIAGRAMGAQAAYIYIRGEFYNEASNLQVAIAEAYQAGLIGKNSCGSGYDFDI 691
H+++EG IA A+GA YIY+R E+ LQ AI +A + GL+G S DF I
Sbjct: 219 HRILEGMAIAAYAVGANHGYIYVRAEYPLAIQRLQKAIQQAKRYGLMGTQIFDSPIDFKI 278
Query: 692 FVHRGAGAYICGEXT 736
+ GAGA++CGE T
Sbjct: 279 DIRVGAGAFVCGEET 293
>UniRef50_Q835I8 Cluster: NAD-dependent formate dehydrogenase, beta
subunit, putative; n=1; Enterococcus faecalis|Rep:
NAD-dependent formate dehydrogenase, beta subunit,
putative - Enterococcus faecalis (Streptococcus
faecalis)
Length = 417
Score = 136 bits (330), Expect = 4e-31
Identities = 65/134 (48%), Positives = 88/134 (65%), Gaps = 1/134 (0%)
Frame = +2
Query: 332 IVNEMKTSGLRGRGGAGFPTGMKWSFMNKPSDGRPKYLVVNADEGEPGTCKDREIMRHDP 511
I+NE+ + LRGRGGA +P G KW + + G KY+V NADEGEPGT KD+ ++ DP
Sbjct: 30 ILNELDIAHLRGRGGAAYPLGKKWRHLYH-AKGTTKYIVCNADEGEPGTFKDKVLLSEDP 88
Query: 512 HKLVEGCLIAGRAMGAQAAYIYIRGEFYNEASNLQVAIAEAYQAGLIGKNSCG-SGYDFD 688
++EG +IAG A+A YIY+RGE+ Q A+ A QAG +G+N G G+++D
Sbjct: 89 LSVIEGMIIAGYLFSAKAGYIYMRGEYRRIQKTFQEALDNARQAGFLGENILGIEGFNYD 148
Query: 689 IFVHRGAGAYICGE 730
I + GAGAYICGE
Sbjct: 149 ITIISGAGAYICGE 162
>UniRef50_Q3ZXP7 Cluster: Hydrogenase subunit HymB; n=7;
Bacteria|Rep: Hydrogenase subunit HymB - Dehalococcoides
sp. (strain CBDB1)
Length = 640
Score = 136 bits (329), Expect = 5e-31
Identities = 64/147 (43%), Positives = 91/147 (61%)
Frame = +2
Query: 296 LTKEILLKGTDWIVNEMKTSGLRGRGGAGFPTGMKWSFMNKPSDGRPKYLVVNADEGEPG 475
L K + + ++ E+ + LRGRGG GFP G KW + +D KY++VN DEG+PG
Sbjct: 163 LVKTLFHMTPESVLEEVDKANLRGRGGGGFPAGKKWRTTHDAADP-VKYVLVNCDEGDPG 221
Query: 476 TCKDREIMRHDPHKLVEGCLIAGRAMGAQAAYIYIRGEFYNEASNLQVAIAEAYQAGLIG 655
DR IM +PH ++EG I A+GA+ YIY+R E+ NL A+ +A + GL+G
Sbjct: 222 AFMDRSIMEGNPHCVLEGLAIGAFAIGAKEGYIYVRAEYPLAVENLYAALRQAEEYGLLG 281
Query: 656 KNSCGSGYDFDIFVHRGAGAYICGEXT 736
KN GSG+DF + VH GAGA++ GE +
Sbjct: 282 KNILGSGFDFVVKVHEGAGAFVSGESS 308
>UniRef50_A5FXJ6 Cluster: NADH dehydrogenase; n=1; Acidiphilium
cryptum JF-5|Rep: NADH dehydrogenase - Acidiphilium
cryptum (strain JF-5)
Length = 434
Score = 135 bits (327), Expect = 9e-31
Identities = 70/179 (39%), Positives = 102/179 (56%), Gaps = 3/179 (1%)
Frame = +2
Query: 209 LADSDRVFTNLY--GRHEWRLKGALARGDWYLTKEILLKGTDWIVNEMKTSGLRGRGGAG 382
+A +DR T+ GR + G G + ++ + +V E+K + +RGRGGAG
Sbjct: 1 MAMADRPLTSYIQPGRQPLDIAGYERAGGYAAMRKAFGMSPESVVEEVKRAKVRGRGGAG 60
Query: 383 FPTGMKWSFMNKPSDG-RPKYLVVNADEGEPGTCKDREIMRHDPHKLVEGCLIAGRAMGA 559
FP G KW + +D R +YLV+NADE EPG+ KDR ++ PH ++EG +I A+ A
Sbjct: 61 FPAGRKWEGAPRGADAPRHRYLVINADEMEPGSFKDRLLLEAAPHLMIEGIIIGAFAVQA 120
Query: 560 QAAYIYIRGEFYNEASNLQVAIAEAYQAGLIGKNSCGSGYDFDIFVHRGAGAYICGEXT 736
+ AYI++RGE+ L A+AEA G +G + GSG+ I VH G YICGE +
Sbjct: 121 ETAYIFVRGEYVLAMERLSRAVAEAEARGYLGADILGSGFSLTIHVHGSGGRYICGEAS 179
>UniRef50_A6GJI0 Cluster: Putative NADH dehydrogenase I chain F;
n=1; Plesiocystis pacifica SIR-1|Rep: Putative NADH
dehydrogenase I chain F - Plesiocystis pacifica SIR-1
Length = 503
Score = 134 bits (325), Expect = 2e-30
Identities = 71/141 (50%), Positives = 91/141 (64%), Gaps = 1/141 (0%)
Frame = +2
Query: 317 KGTDWIVNEMKTSGLRGRGGAGFPTGMKWSFMNKPSDGRPKYLVVNADEGEPGTCKDREI 496
+G DWI+ ++KTSGL+GRGGAGFP +KW + ++ +Y+VVNADEGEPGT KDREI
Sbjct: 143 EGPDWIIEQLKTSGLQGRGGAGFPAHIKWHAVRTQAE-LTRYVVVNADEGEPGTFKDREI 201
Query: 497 MRHDPHKLVEGCLIAGRAMGAQAAYIYIRGEFYNEASNLQVAIAEAYQAGLIGKNSCGSG 676
M PH+++EG IA GA A+IY+RGEF + L+ AIAEA G
Sbjct: 202 MLRRPHRMIEGMAIAAWVAGAAKAFIYVRGEFRDCIRALEAAIAEA-----------GER 250
Query: 677 YDF-DIFVHRGAGAYICGEXT 736
D+ DI + G GAYICGE T
Sbjct: 251 LDWLDIEIVEGHGAYICGEET 271
>UniRef50_O94500 Cluster: Iron sulfur cluster assembly protein; n=1;
Schizosaccharomyces pombe|Rep: Iron sulfur cluster
assembly protein - Schizosaccharomyces pombe (Fission
yeast)
Length = 452
Score = 132 bits (320), Expect = 6e-30
Identities = 71/174 (40%), Positives = 105/174 (60%), Gaps = 5/174 (2%)
Frame = +2
Query: 224 RVFTNLYGRHEWRLKGALARGDWYLTKEILLKGTDWIVNEMKTSGLRGRGGAGFPTGMKW 403
R+F NL + R+ ALA G++ EIL I+ ++ S LRGRG GFPTG K
Sbjct: 33 RMFPNLIEKRIRRIDDALADGEYENLSEILKYDPLNIIELVQESELRGRGRYGFPTGEKM 92
Query: 404 SFMNKPSD---GRPK--YLVVNADEGEPGTCKDREIMRHDPHKLVEGCLIAGRAMGAQAA 568
+ K + GR + ++VNA E + G+ KDR ++RH+PHK++EG +IA RA+ A A
Sbjct: 93 LSLYKATSSERGRKEKPVVIVNAAENDIGSFKDRLLLRHEPHKIIEGAIIAARAVEASAC 152
Query: 569 YIYIRGEFYNEASNLQVAIAEAYQAGLIGKNSCGSGYDFDIFVHRGAGAYICGE 730
Y++IR ++Y E +Q I +AY L+GKN G+ ++ +H GAG+YI GE
Sbjct: 153 YLFIRKDYYEETVMMQKCIIQAYAKKLLGKNLLGTSIGLELLIHPGAGSYITGE 206
>UniRef50_Q6N1Z2 Cluster: NADH-ubiquinone dehydrogenase chain F;
n=8; Alphaproteobacteria|Rep: NADH-ubiquinone
dehydrogenase chain F - Rhodopseudomonas palustris
Length = 428
Score = 131 bits (317), Expect = 1e-29
Identities = 68/138 (49%), Positives = 87/138 (63%), Gaps = 3/138 (2%)
Frame = +2
Query: 332 IVNEMKTSGLRGRGGAGFPTGMKWSFMNKPSDGR---PKYLVVNADEGEPGTCKDREIMR 502
I+ ++ +GLRGRGGAGFPT KW FM S+ +YL VN DE EPG+ KDR +M
Sbjct: 43 IIAMVEAAGLRGRGGAGFPTANKWRFMRTGSERAGPGARYLCVNGDETEPGSFKDRLLME 102
Query: 503 HDPHKLVEGCLIAGRAMGAQAAYIYIRGEFYNEASNLQVAIAEAYQAGLIGKNSCGSGYD 682
PH+L+EG IA A+GA I +R E+ A+ L AIAEA AGL+G++ GSG+D
Sbjct: 103 ALPHQLIEGATIAAYAIGATEVIILVRDEYRAAAAALSRAIAEAEAAGLLGRDILGSGFD 162
Query: 683 FDIFVHRGAGAYICGEXT 736
+ VH AG YI GE T
Sbjct: 163 LTMRVHASAGRYIVGEET 180
>UniRef50_A0NMW4 Cluster: NADH:ubiquinone oxidoreductase,
NADH-binding (51 kD) subunit; n=2; Proteobacteria|Rep:
NADH:ubiquinone oxidoreductase, NADH-binding (51 kD)
subunit - Stappia aggregata IAM 12614
Length = 626
Score = 129 bits (311), Expect = 8e-29
Identities = 67/135 (49%), Positives = 87/135 (64%), Gaps = 2/135 (1%)
Frame = +2
Query: 332 IVNEMKTSGLRGRGGAGFPTGMKWSFMNKPSDGRPKYLVV-NADEGEPGTCKDREIMRHD 508
I++ ++ SGLRG GGAGF TG KW F S+ K+ V+ NADEGEPGT KDR ++
Sbjct: 228 IISAIEESGLRGCGGAGFTTGRKWRFA--ASERAEKHFVICNADEGEPGTFKDRVLLTER 285
Query: 509 PHKLVEGCLIAGRAMGAQAAYIYIRGEFYNEASNLQVAIAEAYQAGLIGKNSCG-SGYDF 685
PH L+EG IA RA+GA+ +Y+RGE+ L + E GL+GK+ G G+DF
Sbjct: 286 PHLLIEGMTIAARAVGAREGILYLRGEYVYLRELLLQVLEERRWRGLLGKDILGVKGFDF 345
Query: 686 DIFVHRGAGAYICGE 730
DI + GAGAYICGE
Sbjct: 346 DIRLQLGAGAYICGE 360
>UniRef50_A0RMD3 Cluster: NADH-quinone oxidoreductase chain f; n=1;
Campylobacter fetus subsp. fetus 82-40|Rep: NADH-quinone
oxidoreductase chain f - Campylobacter fetus subsp.
fetus (strain 82-40)
Length = 406
Score = 128 bits (310), Expect = 1e-28
Identities = 72/163 (44%), Positives = 96/163 (58%)
Frame = +2
Query: 248 RHEWRLKGALARGDWYLTKEILLKGTDWIVNEMKTSGLRGRGGAGFPTGMKWSFMNKPSD 427
++ +++ A A G + + IL + IV + SGLRG+GG G G KW M
Sbjct: 11 KNGYKIDVAKANGAYLNLENILKMDRNSIVEAVDKSGLRGKGGGGGSCGTKWKNMLAWES 70
Query: 428 GRPKYLVVNADEGEPGTCKDREIMRHDPHKLVEGCLIAGRAMGAQAAYIYIRGEFYNEAS 607
+ +YLVVN DE EPGTCKD+ I+ DPH L+EG +I+ A+GA+ AY+YIRGE+ E
Sbjct: 71 DK-RYLVVNGDESEPGTCKDKYILNLDPHLLIEGIIISSYALGAKRAYVYIRGEYEREFI 129
Query: 608 NLQVAIAEAYQAGLIGKNSCGSGYDFDIFVHRGAGAYICGEXT 736
L AI EA N G D +I V++GAGAYICGE T
Sbjct: 130 TLTNAIKEA-------ANELG---DLEIIVYKGAGAYICGEKT 162
>UniRef50_Q47HE6 Cluster: NADH dehydrogenase (Ubiquinone), 24 kDa
subunit:Respiratory-chain NADH dehydrogenase domain, 51
kDa subunit; n=1; Dechloromonas aromatica RCB|Rep: NADH
dehydrogenase (Ubiquinone), 24 kDa
subunit:Respiratory-chain NADH dehydrogenase domain, 51
kDa subunit - Dechloromonas aromatica (strain RCB)
Length = 632
Score = 126 bits (304), Expect = 6e-28
Identities = 62/135 (45%), Positives = 87/135 (64%), Gaps = 3/135 (2%)
Frame = +2
Query: 335 VNEMKTSGLRGRGGAGFPTGMKW-SFMNKP-SDGRPKYLVVNADEGEPGTCKDREIMRHD 508
++E+K + LRGRGGAGF TG+KW + N P G + +V NADEGEPGT KDR ++ +
Sbjct: 230 LDEIKRANLRGRGGAGFTTGLKWEACRNAPLKAGAQRIVVCNADEGEPGTFKDRVLLSRN 289
Query: 509 PHKLVEGCLIAGRAMGAQAAYIYIRGEFYNEASNLQVAIAEAYQAGLIGKNSCG-SGYDF 685
P + EG +A A+GA ++Y+RGE+ +L +A + L+GK+ G G DF
Sbjct: 290 PDLVFEGMTVAAYAVGATRGFVYLRGEYRYMLDHLNAVLAHRRREKLLGKDILGLPGADF 349
Query: 686 DIFVHRGAGAYICGE 730
DI +H GAGAY+CGE
Sbjct: 350 DIEIHVGAGAYVCGE 364
>UniRef50_A6PMG7 Cluster: NADH dehydrogenase (Quinone) precursor;
n=1; Victivallis vadensis ATCC BAA-548|Rep: NADH
dehydrogenase (Quinone) precursor - Victivallis vadensis
ATCC BAA-548
Length = 573
Score = 126 bits (303), Expect = 7e-28
Identities = 63/136 (46%), Positives = 88/136 (64%), Gaps = 1/136 (0%)
Frame = +2
Query: 332 IVNEMKTSGLRGRGGAGFPTGMKWSFMN-KPSDGRPKYLVVNADEGEPGTCKDREIMRHD 508
+V+E+K SGLRGRGG GFPTG KW F+ K +D K L+ NADEG+PG DR +M
Sbjct: 136 VVDEVKLSGLRGRGGGGFPTGNKWGFLAAKQAD--EKILICNADEGDPGAFMDRSLMESA 193
Query: 509 PHKLVEGCLIAGRAMGAQAAYIYIRGEFYNEASNLQVAIAEAYQAGLIGKNSCGSGYDFD 688
PH+++EG LIA A GA +IY R E+ +L++AIA+ Y+ K + +G + +
Sbjct: 194 PHQVLEGMLIAAYATGATKLFIYCRAEYPMAIKHLKIAIAQIYE----HKLNVVNGRELE 249
Query: 689 IFVHRGAGAYICGEXT 736
I + GAGA++CGE T
Sbjct: 250 IIIKEGAGAFVCGEET 265
>UniRef50_Q4AEJ7 Cluster: Hydrogen dehydrogenase; n=1; Chlorobium
phaeobacteroides BS1|Rep: Hydrogen dehydrogenase -
Chlorobium phaeobacteroides BS1
Length = 497
Score = 125 bits (301), Expect = 1e-27
Identities = 68/162 (41%), Positives = 97/162 (59%), Gaps = 5/162 (3%)
Frame = +2
Query: 260 RLKGALARGDWYL---TKEILLK-GTDWIVNEMKTSGLRGRGGAGFPTGMKWSFMNKPSD 427
R KGAL D+ L KEIL + I++ + S +RGRGGAGFPTG+KW F ++ +
Sbjct: 116 RRKGALLNHDYPLFSVIKEILPNTSAEEIIDIVSESNIRGRGGAGFPTGLKWKFGSR-AK 174
Query: 428 GRPKYLVVNADEGEPGTCKDREIMRHDPHKLVEGCLIAGRAMGAQAAYIYIRGEFYNEAS 607
G ++++ NADEGEPGT KDR ++ P + EG + AG A+GA +Y+R E+ +
Sbjct: 175 GERRFIICNADEGEPGTFKDRVLLTEYPEMVFEGMVTAGYAVGADLGLLYLRYEYKYMLN 234
Query: 608 NLQVAIAEAYQAGLIGKNSCG-SGYDFDIFVHRGAGAYICGE 730
L + + + +G N G +DFDI + GAGAYICGE
Sbjct: 235 YLNGVLDDMRKNNYLGTNIGGVENFDFDIRIQLGAGAYICGE 276
>UniRef50_Q1V283 Cluster: NAD-dependent formate dehydrogenase beta
subunit; n=2; Candidatus Pelagibacter ubique|Rep:
NAD-dependent formate dehydrogenase beta subunit -
Candidatus Pelagibacter ubique HTCC1002
Length = 552
Score = 123 bits (297), Expect = 4e-27
Identities = 63/174 (36%), Positives = 94/174 (54%), Gaps = 2/174 (1%)
Frame = +2
Query: 221 DRVFTNLYGRHEWRLKGALARGDWYLT--KEILLKGTDWIVNEMKTSGLRGRGGAGFPTG 394
++ F+ Y + + L+ D + K+ + I + S L GRGGAGFPTG
Sbjct: 140 EKFFSKSYASTSFLMDDKLSNLDQFKEQLKKFIATDKQEITKSLLDSNLTGRGGAGFPTG 199
Query: 395 MKWSFMNKPSDGRPKYLVVNADEGEPGTCKDREIMRHDPHKLVEGCLIAGRAMGAQAAYI 574
MKW F K + KY++ NADEG+ G DR ++ P K++ G +I G +G+ +
Sbjct: 200 MKWDFCRK-APSEKKYVICNADEGDSGAFSDRYLLEDQPLKVLFGMVICGYVIGSDEGVL 258
Query: 575 YIRGEFYNEASNLQVAIAEAYQAGLIGKNSCGSGYDFDIFVHRGAGAYICGEXT 736
YIRGE+ + AI +AGL+G+N G+ + FD+ + G GAYICGE T
Sbjct: 259 YIRGEYPKSIEAINGAINSLKKAGLLGENILGTKFSFDLNICIGQGAYICGEET 312
>UniRef50_Q603S6 Cluster: NAD-reducing hydrogenase, alpha subunit;
n=9; Proteobacteria|Rep: NAD-reducing hydrogenase, alpha
subunit - Methylococcus capsulatus
Length = 610
Score = 118 bits (284), Expect = 1e-25
Identities = 67/170 (39%), Positives = 96/170 (56%), Gaps = 13/170 (7%)
Frame = +2
Query: 260 RLKGALARGDWYLTKEILLKGTDWIVNEMKTSGLRGRGGAGFPTGMKWSFM--------- 412
RL G R L + + L + + E++TS LRGRGGAGF T KW F
Sbjct: 179 RLLGNPVRPGEALERTLALD-RETMFGEIETSQLRGRGGAGFNTAWKWRFCYEGPETAAV 237
Query: 413 ---NKPSDGRPKYLVVNADEGEPGTCKDREIMRHDPHKLVEGCLIAGRAMGAQAAYIYIR 583
+P+ G +Y+V NADEGEPGT KDR +++ ++ EG + +GA+ ++Y+R
Sbjct: 238 CPPGQPAAGIERYVVCNADEGEPGTFKDRVLLQSCADQVFEGMTVCAYLVGAKQGFLYLR 297
Query: 584 GEFYNEASNLQVAIAEAYQAGLIGKNSCG-SGYDFDIFVHRGAGAYICGE 730
GE+ L+ +A + GL+GK+ G G+DFDI + GAGAYICGE
Sbjct: 298 GEYLYLHDQLEAVLAARRRHGLLGKSILGREGFDFDIEIRLGAGAYICGE 347
>UniRef50_A1WBG0 Cluster: NADH dehydrogenase (Quinone) precursor;
n=6; Proteobacteria|Rep: NADH dehydrogenase (Quinone)
precursor - Acidovorax sp. (strain JS42)
Length = 640
Score = 116 bits (279), Expect = 6e-25
Identities = 64/149 (42%), Positives = 87/149 (58%), Gaps = 3/149 (2%)
Frame = +2
Query: 293 YLTKEILLKG---TDWIVNEMKTSGLRGRGGAGFPTGMKWSFMNKPSDGRPKYLVVNADE 463
Y T L+ G + ++ M+ SGLRG GGAGFP G KW + P+ + VN DE
Sbjct: 241 YQTAAALVNGEMDAEAVLAAMEDSGLRGLGGAGFPAGRKWRIVR--DQPAPRLMAVNIDE 298
Query: 464 GEPGTCKDREIMRHDPHKLVEGCLIAGRAMGAQAAYIYIRGEFYNEASNLQVAIAEAYQA 643
GEPGT KDR + DPH+ +EG LIA + +G +A YIY+R E++ + LQ A+ E
Sbjct: 299 GEPGTFKDRTYLERDPHRFLEGVLIAAQVVGTEAVYIYLRDEYHGCRALLQSALEE---- 354
Query: 644 GLIGKNSCGSGYDFDIFVHRGAGAYICGE 730
L ++ C + I + RGAGAYICGE
Sbjct: 355 -LRAESPCPLPH---IELRRGAGAYICGE 379
>UniRef50_A0K164 Cluster: NADH dehydrogenase; n=2;
Actinomycetales|Rep: NADH dehydrogenase - Arthrobacter
sp. (strain FB24)
Length = 566
Score = 110 bits (265), Expect = 3e-23
Identities = 55/151 (36%), Positives = 93/151 (61%), Gaps = 2/151 (1%)
Frame = +2
Query: 290 WYLTKEILLKGT-DWIVNEMKTSGLRGRGGAGFPTGMKW-SFMNKPSDGRPKYLVVNADE 463
W + ++ T + I+ ++ + LRGRGGAGF KW + ++ P+ P+ +V N DE
Sbjct: 186 WSVWPDVAASATPEDILLRVEAAQLRGRGGAGFRAAAKWRAALDHPA---PRVVVANGDE 242
Query: 464 GEPGTCKDREIMRHDPHKLVEGCLIAGRAMGAQAAYIYIRGEFYNEASNLQVAIAEAYQA 643
G+PG+ DR +M D H+++EG ++A A+GA +++R E+ A+ L+ A+ EA +A
Sbjct: 243 GDPGSYADRLLMEQDAHRVLEGLVLACFAVGATTGIVFVRSEYPLAAARLRNALHEARRA 302
Query: 644 GLIGKNSCGSGYDFDIFVHRGAGAYICGEXT 736
G +G + GSG+ ++ V GAG+Y+ GE T
Sbjct: 303 GHLGPDIAGSGFSLEVRVAEGAGSYVSGEET 333
>UniRef50_A1HDX5 Cluster: NADH dehydrogenase; n=4; Ralstonia
pickettii|Rep: NADH dehydrogenase - Ralstonia pickettii
12J
Length = 525
Score = 108 bits (260), Expect = 1e-22
Identities = 58/135 (42%), Positives = 79/135 (58%)
Frame = +2
Query: 332 IVNEMKTSGLRGRGGAGFPTGMKWSFMNKPSDGRPKYLVVNADEGEPGTCKDREIMRHDP 511
+VN + S LRGRGGA FP G+KW + KY+VVNADEG+PG DR ++ DP
Sbjct: 163 LVNMVAASRLRGRGGAAFPAGIKWQAVASAC-AETKYVVVNADEGDPGAFSDRFLLEEDP 221
Query: 512 HKLVEGCLIAGRAMGAQAAYIYIRGEFYNEASNLQVAIAEAYQAGLIGKNSCGSGYDFDI 691
+L+E IA A+GA+ YIYIR E+ + + A+ +A AG +G + ++
Sbjct: 222 FRLIEATAIAAHAVGARRGYIYIRKEYPDAVRVMSHALEQARVAGWLGPT-----LELEL 276
Query: 692 FVHRGAGAYICGEXT 736
V G GAYICGE T
Sbjct: 277 VV--GQGAYICGEET 289
>UniRef50_A3EW61 Cluster: NADH ubiquinone oxidoreductase; n=1;
Leptospirillum sp. Group II UBA|Rep: NADH ubiquinone
oxidoreductase - Leptospirillum sp. Group II UBA
Length = 453
Score = 107 bits (256), Expect = 4e-22
Identities = 53/134 (39%), Positives = 79/134 (58%)
Frame = +2
Query: 335 VNEMKTSGLRGRGGAGFPTGMKWSFMNKPSDGRPKYLVVNADEGEPGTCKDREIMRHDPH 514
+ E+K +GLRGRGG+GFPT +KW + R KY+V N EGEPG+ KD ++ +PH
Sbjct: 57 IEELKEAGLRGRGGSGFPTAIKWEKVAHHRI-REKYVVANGSEGEPGSHKDHFLIETNPH 115
Query: 515 KLVEGCLIAGRAMGAQAAYIYIRGEFYNEASNLQVAIAEAYQAGLIGKNSCGSGYDFDIF 694
+++EG +IA A+ A+ A ++++ F L+ A EA + G +G GS D+
Sbjct: 116 QILEGMIIASFAVRARKAILFVKDSFPRGIDALKKARDEAREEGFLGDRILGSELSLDLE 175
Query: 695 VHRGAGAYICGEXT 736
+ G AYI GE T
Sbjct: 176 IFVGPSAYIAGEET 189
>UniRef50_A1SU84 Cluster: Hydrogenase, NADP-reducing subunit C; n=1;
Psychromonas ingrahamii 37|Rep: Hydrogenase,
NADP-reducing subunit C - Psychromonas ingrahamii
(strain 37)
Length = 588
Score = 107 bits (256), Expect = 4e-22
Identities = 55/130 (42%), Positives = 73/130 (56%)
Frame = +2
Query: 341 EMKTSGLRGRGGAGFPTGMKWSFMNKPSDGRPKYLVVNADEGEPGTCKDREIMRHDPHKL 520
E+ SGLRG GGAGF T KW SD +Y+V NADEGEPGT KDR ++ L
Sbjct: 203 EIDKSGLRGCGGAGFKTAEKWKSCLL-SDDNQRYVVCNADEGEPGTFKDRVLLNSYADLL 261
Query: 521 VEGCLIAGRAMGAQAAYIYIRGEFYNEASNLQVAIAEAYQAGLIGKNSCGSGYDFDIFVH 700
+EG + +GAQ +IY+R E+ + L + A L+G + S FDI +
Sbjct: 262 IEGMTLCAYVIGAQKGFIYLRYEYQHLYKKLLETLQRRRAANLLGAHILNSELSFDIEIF 321
Query: 701 RGAGAYICGE 730
GAG+Y+CGE
Sbjct: 322 MGAGSYVCGE 331
>UniRef50_Q5P4U3 Cluster: Formate dehydrogenase, NAD(P) reducing,
beta subunit; n=41; Proteobacteria|Rep: Formate
dehydrogenase, NAD(P) reducing, beta subunit - Azoarcus
sp. (strain EbN1) (Aromatoleum aromaticum (strain EbN1))
Length = 585
Score = 99.5 bits (237), Expect = 7e-20
Identities = 55/135 (40%), Positives = 73/135 (54%)
Frame = +2
Query: 326 DWIVNEMKTSGLRGRGGAGFPTGMKWSFMNKPSDGRPKYLVVNADEGEPGTCKDREIMRH 505
D +V + +GLRG GGAGFP KW + + P+++ VN DEGEPGT KDR +
Sbjct: 217 DAVVAALDAAGLRGLGGAGFPAARKWRTV--AAQPAPRFMAVNIDEGEPGTFKDRHYLET 274
Query: 506 DPHKLVEGCLIAGRAMGAQAAYIYIRGEFYNEASNLQVAIAEAYQAGLIGKNSCGSGYDF 685
DPH+ +EG LIA +G +IYIR E+ L+ +AE S
Sbjct: 275 DPHRFIEGMLIAAHVVGIDGIWIYIRDEY----PALRRLLAEELDRVRAAWPDVPS---- 326
Query: 686 DIFVHRGAGAYICGE 730
I + RGAGAY+CGE
Sbjct: 327 -IEIRRGAGAYVCGE 340
>UniRef50_Q1PZQ6 Cluster: Similar to NADH dehydrogenase I chain F
(1st module) EC: 1.6.5.3; n=1; Candidatus Kuenenia
stuttgartiensis|Rep: Similar to NADH dehydrogenase I
chain F (1st module) EC: 1.6.5.3 - Candidatus Kuenenia
stuttgartiensis
Length = 675
Score = 97.9 bits (233), Expect = 2e-19
Identities = 49/107 (45%), Positives = 68/107 (63%)
Frame = +2
Query: 332 IVNEMKTSGLRGRGGAGFPTGMKWSFMNKPSDGRPKYLVVNADEGEPGTCKDREIMRHDP 511
IV E+ SGLRGRGGAGFPTG+KW + + + +Y+V NA EGEPGT KDR ++R +P
Sbjct: 263 IVTELLASGLRGRGGAGFPTGVKWRTLVRHTCPT-RYVVCNAAEGEPGTFKDRYLLRKNP 321
Query: 512 HKLVEGCLIAGRAMGAQAAYIYIRGEFYNEASNLQVAIAEAYQAGLI 652
+ +EG LIA A+ A YI ++ F ++ AI+E GL+
Sbjct: 322 YATIEGMLIAAHAVNAAGIYIALKRSFGPSIERVRQAISEMASKGLM 368
>UniRef50_Q67JR5 Cluster: NADH dehydrogenase subunit; n=1;
Symbiobacterium thermophilum|Rep: NADH dehydrogenase
subunit - Symbiobacterium thermophilum
Length = 394
Score = 95.5 bits (227), Expect = 1e-18
Identities = 49/128 (38%), Positives = 78/128 (60%), Gaps = 2/128 (1%)
Frame = +2
Query: 278 ARGDWYLTKEILLKGTDWIVNEMKTSGLRGRGGAGF--PTGMKWSFMNKPSDGRPKYLVV 451
ARG + + +G+ W++ ++ +GLRGRGG+G P G KW + S +Y+V
Sbjct: 21 ARGGYAGLEAARTRGSGWVLEQVTRAGLRGRGGSGDGRPIGQKWQRV-AASRVPERYVVA 79
Query: 452 NADEGEPGTCKDREIMRHDPHKLVEGCLIAGRAMGAQAAYIYIRGEFYNEASNLQVAIAE 631
NA E + + KDR ++ PH+++EG LIA +A+GA+ AY+Y+RG+ + A+AE
Sbjct: 80 NAAESQAVSRKDRYLLARFPHRVLEGLLIAAQALGAREAYLYVRGDSPEALDGARDAVAE 139
Query: 632 AYQAGLIG 655
A AGL+G
Sbjct: 140 AGAAGLLG 147
>UniRef50_UPI0000384AE3 Cluster: COG1894: NADH:ubiquinone
oxidoreductase, NADH-binding (51 kD) subunit; n=1;
Magnetospirillum magnetotacticum MS-1|Rep: COG1894:
NADH:ubiquinone oxidoreductase, NADH-binding (51 kD)
subunit - Magnetospirillum magnetotacticum MS-1
Length = 514
Score = 95.1 bits (226), Expect = 2e-18
Identities = 54/136 (39%), Positives = 78/136 (57%), Gaps = 1/136 (0%)
Frame = +2
Query: 326 DWIVNEMKTSGLRGRGGAGFPTGMKW-SFMNKPSDGRPKYLVVNADEGEPGTCKDREIMR 502
D ++ E++ +GLRG GGAGFPT KW + +P P+ +VVNADEGEPGT KDR ++
Sbjct: 165 DEVLAELERAGLRGMGGAGFPTARKWRAVAARPG---PRLVVVNADEGEPGTFKDRWFLQ 221
Query: 503 HDPHKLVEGCLIAGRAMGAQAAYIYIRGEFYNEASNLQVAIAEAYQAGLIGKNSCGSGYD 682
+ +++EG LIA A+ A Y+Y+R E Y + L + A +
Sbjct: 222 TNAARVLEGALIAAWAVEADEVYLYLRDE-YADLHKLLTVLIRALPGSV----------- 269
Query: 683 FDIFVHRGAGAYICGE 730
+ + RGAGAY+CGE
Sbjct: 270 -PVHLRRGAGAYVCGE 284
>UniRef50_A7IMB3 Cluster: NADH dehydrogenase; n=3;
Proteobacteria|Rep: NADH dehydrogenase - Xanthobacter
sp. (strain Py2)
Length = 422
Score = 91.1 bits (216), Expect = 3e-17
Identities = 53/138 (38%), Positives = 72/138 (52%), Gaps = 1/138 (0%)
Frame = +2
Query: 326 DWIVNEMKTSGLRGRGGAGFPTGMKWSFMN-KPSDGRPKYLVVNADEGEPGTCKDREIMR 502
D I+ +K + LRG GGAGFPT KWS P D KY+V N +E EPGT KDR ++R
Sbjct: 45 DAIIETLKDADLRGMGGAGFPTWRKWSAAAASPCD--EKYVVCNGNEDEPGTFKDRHLLR 102
Query: 503 HDPHKLVEGCLIAGRAMGAQAAYIYIRGEFYNEASNLQVAIAEAYQAGLIGKNSCGSGYD 682
PH+++EG LIA A+ A Y+ ++ A+ E + L+ S G
Sbjct: 103 WTPHQVIEGALIAAVAVKANRVVFYVNPHQAEGIDQMRWAVDEWTASDLLASVSKVVGRP 162
Query: 683 FDIFVHRGAGAYICGEXT 736
+ V +G YI GE T
Sbjct: 163 VTLTVAPSSGRYIGGEET 180
>UniRef50_A5X3H0 Cluster: HtxX; n=1; Xanthobacter flavus|Rep: HtxX -
Xanthobacter flavus
Length = 496
Score = 81.0 bits (191), Expect = 3e-14
Identities = 47/124 (37%), Positives = 68/124 (54%)
Frame = +2
Query: 365 GRGGAGFPTGMKWSFMNKPSDGRPKYLVVNADEGEPGTCKDREIMRHDPHKLVEGCLIAG 544
GR G GFP G KW + + G P ++VN DEGE KDR I+ DPH ++E L+A
Sbjct: 158 GRAGVGFPVGEKWRQV-MAAGGTP-VVIVNGDEGELAIFKDRFILETDPHGVLEAALVAA 215
Query: 545 RAMGAQAAYIYIRGEFYNEASNLQVAIAEAYQAGLIGKNSCGSGYDFDIFVHRGAGAYIC 724
R GA ++Y+R ++ + ++ A+ E AGL + G G + + R GA+IC
Sbjct: 216 RVTGADLVFLYVRDDYAPIHAIVRRALEEVAAAGL----AEGIGLE----LRRSGGAFIC 267
Query: 725 GEXT 736
GE T
Sbjct: 268 GEET 271
>UniRef50_O96948 Cluster: Hydrogenase; n=14; Eukaryota|Rep:
Hydrogenase - Nyctotherus ovalis
Length = 1206
Score = 79.0 bits (186), Expect = 1e-13
Identities = 47/146 (32%), Positives = 76/146 (52%), Gaps = 2/146 (1%)
Frame = +2
Query: 299 TKEILLKGTDWIVNEMKTSGLRGRGGAGFPTGMKWSFMNKPSDGRPKYLVVNADEGEPGT 478
TK+ + G + ++ E+ S L GRGGAGF TG KW K + KY+V NADEG P T
Sbjct: 832 TKKAVSMGPEKVIEEVFKSNLVGRGGAGFRTGKKWESAYK-TPASDKYVVCNADEGLPST 890
Query: 479 CKDREIMRHDPHK--LVEGCLIAGRAMGAQAAYIYIRGEFYNEASNLQVAIAEAYQAGLI 652
KD ++ ++ + + G I + +GA+ ++Y+R E+ N L+ +I +
Sbjct: 891 YKDWCLLNNEAKRKEVFTGMGICAKTIGAKRCFMYLRYEYRNLVPALEQSIKDV------ 944
Query: 653 GKNSCGSGYDFDIFVHRGAGAYICGE 730
+++C D + G G Y+ GE
Sbjct: 945 -QSTCPELADLKYEIRLGGGPYVAGE 969
>UniRef50_A3Q2V2 Cluster: Respiratory-chain NADH dehydrogenase
domain, 51 kDa subunit; n=8; Mycobacterium|Rep:
Respiratory-chain NADH dehydrogenase domain, 51 kDa
subunit - Mycobacterium sp. (strain JLS)
Length = 433
Score = 67.7 bits (158), Expect = 3e-10
Identities = 31/84 (36%), Positives = 52/84 (61%), Gaps = 1/84 (1%)
Frame = +2
Query: 332 IVNEMKTSGLRGRGGAGFPTGMKWSFMNKPSDGRPKYLVV-NADEGEPGTCKDREIMRHD 508
+++E++ SGL GRGGA FP +K + R + + N +EGEP + KDR ++RH
Sbjct: 49 LLDEVELSGLLGRGGAAFPMAVKLRSVRDHGRTRGGAVAIANGEEGEPASIKDRWLLRHR 108
Query: 509 PHKLVEGCLIAGRAMGAQAAYIYI 580
PH +++G +A R + A+ A +Y+
Sbjct: 109 PHLVLDGLRLAARVVEAERAIVYV 132
>UniRef50_Q51696 Cluster: Putative uncharacterized protein ORF2;
n=1; Brevundimonas diminuta|Rep: Putative
uncharacterized protein ORF2 - Brevundimonas diminuta
(Pseudomonas diminuta)
Length = 401
Score = 60.5 bits (140), Expect = 4e-08
Identities = 29/67 (43%), Positives = 40/67 (59%)
Frame = +2
Query: 359 LRGRGGAGFPTGMKWSFMNKPSDGRPKYLVVNADEGEPGTCKDREIMRHDPHKLVEGCLI 538
L G+GGA FP+ K ++ + R KYLVVN E EPG+ KD ++ H P ++EG L
Sbjct: 48 LSGKGGANFPSARKMRLFHQQAAPR-KYLVVNGGEHEPGSAKDDWLLLHHPDTVIEGALC 106
Query: 539 AGRAMGA 559
A+GA
Sbjct: 107 VAHALGA 113
>UniRef50_A5N6H2 Cluster: RnfC related NADH dehydrogenase; n=2;
Clostridium kluyveri DSM 555|Rep: RnfC related NADH
dehydrogenase - Clostridium kluyveri DSM 555
Length = 442
Score = 58.8 bits (136), Expect = 1e-07
Identities = 34/98 (34%), Positives = 57/98 (58%)
Frame = +2
Query: 332 IVNEMKTSGLRGRGGAGFPTGMKWSFMNKPSDGRPKYLVVNADEGEPGTCKDREIMRHDP 511
++ ++K +G+ G GGAGFPT +K +N + KY +VNA E EP D+ +MR+
Sbjct: 3 LLKKVKDAGIIGAGGAGFPTHVK---LNT----KVKYFIVNALECEPLLQSDKYLMRNHS 55
Query: 512 HKLVEGCLIAGRAMGAQAAYIYIRGEFYNEASNLQVAI 625
++V I G+++GA+ I ++ +YNE L +I
Sbjct: 56 DEIVGATEIIGKSLGAEKIVIGLKNVYYNEIDALTNSI 93
>UniRef50_A1SNE6 Cluster: Respiratory-chain NADH dehydrogenase
domain, 51 kDa subunit; n=1; Nocardioides sp. JS614|Rep:
Respiratory-chain NADH dehydrogenase domain, 51 kDa
subunit - Nocardioides sp. (strain BAA-499 / JS614)
Length = 412
Score = 57.6 bits (133), Expect = 3e-07
Identities = 30/92 (32%), Positives = 51/92 (55%), Gaps = 1/92 (1%)
Frame = +2
Query: 359 LRGRGGAGFPTGMKW-SFMNKPSDGRPKYLVVNADEGEPGTCKDREIMRHDPHKLVEGCL 535
+RGRGGA FP +K + ++ GR +VVN EGEP + KD + PH +++G +
Sbjct: 57 VRGRGGAAFPFEVKLRTAADRSRQGRRPVVVVNLSEGEPASAKDSALALTRPHLVLDGAV 116
Query: 536 IAGRAMGAQAAYIYIRGEFYNEASNLQVAIAE 631
A+GA+ ++ + E + ++ A+AE
Sbjct: 117 ATAYALGARELHVVVPQERPLVGTAIRAALAE 148
>UniRef50_A7G5W1 Cluster: NADH dehydrogenase family protein; n=4;
Clostridium botulinum A|Rep: NADH dehydrogenase family
protein - Clostridium botulinum (strain Hall / ATCC 3502
/ NCTC 13319 / Type A)
Length = 372
Score = 54.8 bits (126), Expect = 2e-06
Identities = 36/121 (29%), Positives = 61/121 (50%), Gaps = 1/121 (0%)
Frame = +2
Query: 266 KGALARGDWYLTKEIL-LKGTDWIVNEMKTSGLRGRGGAGFPTGMKWSFMNKPSDGRPKY 442
K + + D TKE + +K D +V+ + +G+ G GGAGFPT +K NK DG Y
Sbjct: 57 KEIIIKADETQTKEFVKIKKCDNLVDTVFEAGIVGAGGAGFPTHIKLKADNK--DG---Y 111
Query: 443 LVVNADEGEPGTCKDREIMRHDPHKLVEGCLIAGRAMGAQAAYIYIRGEFYNEASNLQVA 622
++ N E EP + +++ P ++ G A +A ++ YI I+ + L+ A
Sbjct: 112 IIANCVECEPALHHNMKVIEETPELIINGIKYAMKATNSKKGYIAIKSKHEKAVRVLEEA 171
Query: 623 I 625
+
Sbjct: 172 L 172
>UniRef50_Q44SY7 Cluster: Electron transport complex, RnfABCDGE
type, C subunit; n=5; Chlorobiaceae|Rep: Electron
transport complex, RnfABCDGE type, C subunit -
Chlorobium limicola DSM 245
Length = 441
Score = 54.0 bits (124), Expect = 4e-06
Identities = 41/121 (33%), Positives = 61/121 (50%), Gaps = 3/121 (2%)
Frame = +2
Query: 227 VFTNLYGRHEWRLKGA-LARGDWY-LTKEILLKGTDWIVNEMKTSGLRGRGGAGFPTGMK 400
VF G+ EW L+G DW L+KE +LK + SG+ G GGAGFP+G+K
Sbjct: 95 VFITPDGKDEW-LEGLNTPECDWKKLSKEEILK-------RITDSGIVGMGGAGFPSGVK 146
Query: 401 WSFMNKPSDGRPKYLVVNADEGEPGTCKDREIMRHDPHKLVEGC-LIAGRAMGAQAAYIY 577
++ P D +++N E EP D +M +P +++G +I G +AYI
Sbjct: 147 ---LSPPKDKTIDTIILNGAECEPFLTADHRVMVEEPEAIIKGLEIITSLFQGKVSAYIG 203
Query: 578 I 580
I
Sbjct: 204 I 204
>UniRef50_Q9ACZ1 Cluster: Putative oxidoreductase; n=3;
Streptomyces|Rep: Putative oxidoreductase - Streptomyces
coelicolor
Length = 525
Score = 53.6 bits (123), Expect = 5e-06
Identities = 30/106 (28%), Positives = 54/106 (50%), Gaps = 2/106 (1%)
Frame = +2
Query: 320 GTDWIVNEMKTSGLRGRGGAGFPTGMKWSFMNKPS--DGRPKYLVVNADEGEPGTCKDRE 493
G + + + L+GRGGAGFP K + + + G +VVN E +P KD
Sbjct: 33 GGEQLAKLAEAINLKGRGGAGFPFHKKLRSVTEAAIKRGVRPVVVVNGSESDPSCRKDTV 92
Query: 494 IMRHDPHKLVEGCLIAGRAMGAQAAYIYIRGEFYNEASNLQVAIAE 631
++ PH +++G L+ A+GA+ + + E + +++ A+AE
Sbjct: 93 LINRAPHLILDGALLVAEALGARTLVVGVTRE--STQRSMEAALAE 136
>UniRef50_Q73PG1 Cluster: Na(+)-translocating NADH-quinone
reductase, A subunit; n=1; Treponema denticola|Rep:
Na(+)-translocating NADH-quinone reductase, A subunit -
Treponema denticola
Length = 480
Score = 53.6 bits (123), Expect = 5e-06
Identities = 29/99 (29%), Positives = 51/99 (51%)
Frame = +2
Query: 335 VNEMKTSGLRGRGGAGFPTGMKWSFMNKPSDGRPKYLVVNADEGEPGTCKDREIMRHDPH 514
+ ++ +G+ G GGA FPT +K ++ P D + +Y++ N E EP C D + D
Sbjct: 124 LKRVRDAGITGMGGASFPTHVK---LSPPPDAKIEYVIANGAECEPYLCTDAATIFSDSD 180
Query: 515 KLVEGCLIAGRAMGAQAAYIYIRGEFYNEASNLQVAIAE 631
+V+G I R +GA+ I + + L+ AI++
Sbjct: 181 SIVDGLAITMRIVGAKQGIIALEDNKKDLVPVLEKAISK 219
>UniRef50_Q92CR5 Cluster: Lin1106 protein; n=13; Listeria|Rep:
Lin1106 protein - Listeria innocua
Length = 454
Score = 52.8 bits (121), Expect = 8e-06
Identities = 33/100 (33%), Positives = 54/100 (54%)
Frame = +2
Query: 332 IVNEMKTSGLRGRGGAGFPTGMKWSFMNKPSDGRPKYLVVNADEGEPGTCKDREIMRHDP 511
I+ ++K +G+ G GGAGFPT K+S G +YL++NA E EP D +MR+
Sbjct: 6 ILEKIKDAGVVGCGGAGFPTHAKFS-------GEVEYLIINAAECEPLLKTDHFVMRNHA 58
Query: 512 HKLVEGCLIAGRAMGAQAAYIYIRGEFYNEASNLQVAIAE 631
+ ++ + +GA+ A I + + E + L+ AI E
Sbjct: 59 VETIKAIEMVKNQVGAEFAVIATKRYYTEEIAALRSAITE 98
>UniRef50_A1WT48 Cluster: Electron transport complex, RnfABCDGE
type, C subunit; n=1; Halorhodospira halophila SL1|Rep:
Electron transport complex, RnfABCDGE type, C subunit -
Halorhodospira halophila (strain DSM 244 / SL1)
(Ectothiorhodospirahalophila (strain DSM 244 / SL1))
Length = 448
Score = 52.8 bits (121), Expect = 8e-06
Identities = 32/99 (32%), Positives = 51/99 (51%)
Frame = +2
Query: 332 IVNEMKTSGLRGRGGAGFPTGMKWSFMNKPSDGRPKYLVVNADEGEPGTCKDREIMRHDP 511
+V ++ +G+ G+GGA FPT +K++ P LVVN E EP D +M
Sbjct: 131 LVEAIRDAGIVGQGGASFPTHLKFAV---PEGYTVDTLVVNGCECEPFLSADHRLMVEAT 187
Query: 512 HKLVEGCLIAGRAMGAQAAYIYIRGEFYNEASNLQVAIA 628
+++G +A RA+GA A I + + + LQ A+A
Sbjct: 188 DSIIDGVRLAMRAVGAPEAVIGVEDNKPDAVAALQAAVA 226
>UniRef50_A0LLS5 Cluster: Electron transport complex, RnfABCDGE
type, C subunit; n=3; Deltaproteobacteria|Rep: Electron
transport complex, RnfABCDGE type, C subunit -
Syntrophobacter fumaroxidans (strain DSM 10017 / MPOB)
Length = 440
Score = 51.6 bits (118), Expect = 2e-05
Identities = 33/101 (32%), Positives = 51/101 (50%)
Frame = +2
Query: 332 IVNEMKTSGLRGRGGAGFPTGMKWSFMNKPSDGRPKYLVVNADEGEPGTCKDREIMRHDP 511
++ +++ +GL G GGAGFPT +K ++ P R L++NA E EP D M P
Sbjct: 126 LLEKIRNAGLVGLGGAGFPTHLK---LSPPPGTRLDKLILNAAECEPYLNCDNRTMIEFP 182
Query: 512 HKLVEGCLIAGRAMGAQAAYIYIRGEFYNEASNLQVAIAEA 634
H+++ G I R +G + +I I L A AE+
Sbjct: 183 HEILTGARIILRILGIKECHIGIENNKQEAIWVLSRAAAES 223
>UniRef50_Q67R12 Cluster: Na+-transporting NADH-quinone reductase
subunit 1; n=2; Firmicutes|Rep: Na+-transporting
NADH-quinone reductase subunit 1 - Symbiobacterium
thermophilum
Length = 446
Score = 51.2 bits (117), Expect = 3e-05
Identities = 31/100 (31%), Positives = 48/100 (48%)
Frame = +2
Query: 329 WIVNEMKTSGLRGRGGAGFPTGMKWSFMNKPSDGRPKYLVVNADEGEPGTCKDREIMRHD 508
+I + ++ +GL G GGAGFP +K KP P +++N E EP D +M
Sbjct: 128 FIRDRVRQAGLVGMGGAGFPAAVK--LTPKPGT-EPDVVILNGAECEPAITSDHRLMLEH 184
Query: 509 PHKLVEGCLIAGRAMGAQAAYIYIRGEFYNEASNLQVAIA 628
P ++V G + RA GA+ I + + A L +A
Sbjct: 185 PEQVVLGLRLFMRASGAKRGIIAVEANKPDAAGKLSQLVA 224
>UniRef50_Q21I18 Cluster: Electron transport complex, RnfABCDGE
type, C subunit; n=1; Saccharophagus degradans 2-40|Rep:
Electron transport complex, RnfABCDGE type, C subunit -
Saccharophagus degradans (strain 2-40 / ATCC 43961 / DSM
17024)
Length = 745
Score = 51.2 bits (117), Expect = 3e-05
Identities = 28/77 (36%), Positives = 42/77 (54%)
Frame = +2
Query: 326 DWIVNEMKTSGLRGRGGAGFPTGMKWSFMNKPSDGRPKYLVVNADEGEPGTCKDREIMRH 505
D +V +++ +G+ G GGAGFPT +K +N S+ K L+ N E EP D +MR
Sbjct: 125 DRLVQKIRAAGIVGMGGAGFPTAIK---VNPKSNKHVKTLIFNGTECEPYITADDMLMRE 181
Query: 506 DPHKLVEGCLIAGRAMG 556
+V+G + R MG
Sbjct: 182 RADDIVKGVQLIARFMG 198
>UniRef50_Q0EPY6 Cluster: Electron transport complex, RnfABCDGE
type, C subunit; n=3; Clostridia|Rep: Electron transport
complex, RnfABCDGE type, C subunit - Thermoanaerobacter
ethanolicus X514
Length = 443
Score = 51.2 bits (117), Expect = 3e-05
Identities = 28/81 (34%), Positives = 44/81 (54%)
Frame = +2
Query: 332 IVNEMKTSGLRGRGGAGFPTGMKWSFMNKPSDGRPKYLVVNADEGEPGTCKDREIMRHDP 511
I+ ++ +G+ G GGAGFPT +K ++ PSD + ++VN E EP D +M P
Sbjct: 127 IIEIIREAGITGMGGAGFPTHVK---LSPPSDKKIDTILVNGAECEPYLTTDHRLMVEYP 183
Query: 512 HKLVEGCLIAGRAMGAQAAYI 574
K+V G +A+G + I
Sbjct: 184 EKIVFGLKAIMKAVGVERGII 204
>UniRef50_Q0AAG9 Cluster: Electron transport complex, RnfABCDGE
type, C subunit; n=2; Chromatiales|Rep: Electron
transport complex, RnfABCDGE type, C subunit -
Alkalilimnicola ehrlichei (strain MLHE-1)
Length = 515
Score = 50.8 bits (116), Expect = 3e-05
Identities = 32/96 (33%), Positives = 50/96 (52%), Gaps = 1/96 (1%)
Frame = +2
Query: 344 MKTSGLRGRGGAGFPTGMKWSFMNKPSDGRPKYLVVNADEGEPG-TCKDREIMRHDPHKL 520
++ +G+ G GGA FPT +K +N PSD P L+ N E + TC DR +MR P ++
Sbjct: 132 VREAGIVGLGGAAFPTAIK---LNPPSDTLPDTLIANGVECDTHITCDDR-LMRERPEQI 187
Query: 521 VEGCLIAGRAMGAQAAYIYIRGEFYNEASNLQVAIA 628
++G A + I + G+ A L+ A+A
Sbjct: 188 LDGVATAADMLNVVRIRIAVEGDKPEAARALRDALA 223
>UniRef50_A7BY78 Cluster: Electron transport complex protein rnfC;
n=1; Beggiatoa sp. PS|Rep: Electron transport complex
protein rnfC - Beggiatoa sp. PS
Length = 446
Score = 50.0 bits (114), Expect = 6e-05
Identities = 27/80 (33%), Positives = 43/80 (53%)
Frame = +2
Query: 335 VNEMKTSGLRGRGGAGFPTGMKWSFMNKPSDGRPKYLVVNADEGEPGTCKDREIMRHDPH 514
+N ++ +G+ G GGA FP+ +K++ P + K+LV+N E EP D +M P
Sbjct: 133 INHVQKAGIVGMGGAAFPSHVKYAL---PDGMQIKHLVINGAECEPYLTNDHRLMLERPD 189
Query: 515 KLVEGCLIAGRAMGAQAAYI 574
L+ G I + +GA A I
Sbjct: 190 TLLRGIEIVRQKLGATQATI 209
>UniRef50_A1SQ39 Cluster: Respiratory-chain NADH dehydrogenase
domain, 51 kDa subunit; n=1; Nocardioides sp. JS614|Rep:
Respiratory-chain NADH dehydrogenase domain, 51 kDa
subunit - Nocardioides sp. (strain BAA-499 / JS614)
Length = 412
Score = 50.0 bits (114), Expect = 6e-05
Identities = 27/65 (41%), Positives = 36/65 (55%)
Frame = +2
Query: 359 LRGRGGAGFPTGMKWSFMNKPSDGRPKYLVVNADEGEPGTCKDREIMRHDPHKLVEGCLI 538
L GRGGA FP K + P+ R + LV N E EP + KDR +M PH +++G L
Sbjct: 50 LLGRGGAAFPVATK--LLAVPTGSRTQVLV-NGSESEPASRKDRTLMTLTPHLVLDGALA 106
Query: 539 AGRAM 553
RA+
Sbjct: 107 VARAL 111
>UniRef50_UPI0000E87BCA Cluster: predicted NADH:ubiquinone
oxidoreductase, subunit RnfC; n=1; Methylophilales
bacterium HTCC2181|Rep: predicted NADH:ubiquinone
oxidoreductase, subunit RnfC - Methylophilales bacterium
HTCC2181
Length = 510
Score = 49.2 bits (112), Expect = 1e-04
Identities = 32/82 (39%), Positives = 45/82 (54%)
Frame = +2
Query: 335 VNEMKTSGLRGRGGAGFPTGMKWSFMNKPSDGRPKYLVVNADEGEPGTCKDREIMRHDPH 514
+ ++ SG+ G GGA FPT +K + N+ K L+VNA E EP D +MR
Sbjct: 130 IKKISESGIVGLGGATFPTHLKLNNNNEV-----KTLIVNAAECEPYITCDDMLMREKSA 184
Query: 515 KLVEGCLIAGRAMGAQAAYIYI 580
+L+EG +A +GAQ A I I
Sbjct: 185 ELIEGIRLALHLLGAQNAIIGI 206
>UniRef50_Q896I5 Cluster: RnfC/nqrF; n=18; Clostridiales|Rep:
RnfC/nqrF - Clostridium tetani
Length = 449
Score = 49.2 bits (112), Expect = 1e-04
Identities = 27/67 (40%), Positives = 42/67 (62%), Gaps = 1/67 (1%)
Frame = +2
Query: 332 IVNEMKTSGLRGRGGAGFPTGMKWSFMNKPSDGRPKYLVVNADEGEPG-TCKDREIMRHD 508
I+N +K +G+ G GGA FPT +K + P D + +Y+VVNA E EP TC R ++ H
Sbjct: 137 IINIVKEAGIVGMGGATFPTNVK---LTPPPDKKIEYIVVNAAECEPYLTCDHRMMLEHS 193
Query: 509 PHKLVEG 529
++++G
Sbjct: 194 -KEIIKG 199
>UniRef50_A6PV28 Cluster: Respiratory-chain NADH dehydrogenase
domain, 51 kDa subunit; n=1; Victivallis vadensis ATCC
BAA-548|Rep: Respiratory-chain NADH dehydrogenase
domain, 51 kDa subunit - Victivallis vadensis ATCC
BAA-548
Length = 239
Score = 48.8 bits (111), Expect = 1e-04
Identities = 25/74 (33%), Positives = 39/74 (52%)
Frame = +2
Query: 353 SGLRGRGGAGFPTGMKWSFMNKPSDGRPKYLVVNADEGEPGTCKDREIMRHDPHKLVEGC 532
+GL G GGA FPT +K ++ P D L++N E EP D +M P +++EG
Sbjct: 135 AGLVGMGGAAFPTHVK---LSPPPDKTIDTLILNGAECEPYLTADHRLMLEQPERVLEGA 191
Query: 533 LIAGRAMGAQAAYI 574
I+ + + + YI
Sbjct: 192 AISAKILNVKNVYI 205
>UniRef50_A1I872 Cluster: Electron transport complex, RnfABCDGE
type, C subunit; n=1; Candidatus Desulfococcus
oleovorans Hxd3|Rep: Electron transport complex,
RnfABCDGE type, C subunit - Candidatus Desulfococcus
oleovorans Hxd3
Length = 454
Score = 48.8 bits (111), Expect = 1e-04
Identities = 36/101 (35%), Positives = 52/101 (51%), Gaps = 2/101 (1%)
Frame = +2
Query: 284 GDWYLTKEILLKGTDWIVNE-MKTSGLRGRGGAGFPTGMKWSFMNKPSDGRP-KYLVVNA 457
GDW K+ K ++E + +G+ G GGA FPT +K P+D RP L++N
Sbjct: 126 GDW--PKDAADKHDPKAISEAISAAGIVGLGGAAFPTHVK----IMPNDKRPVDALLING 179
Query: 458 DEGEPGTCKDREIMRHDPHKLVEGCLIAGRAMGAQAAYIYI 580
E EP D IM ++ G L+AGRA+GA+ + I
Sbjct: 180 CECEPFLTPDYRIMVEAADAVICGALLAGRAVGAKQIVVGI 220
>UniRef50_A6TJY1 Cluster: Respiratory-chain NADH dehydrogenase
domain, 51 kDa subunit; n=1; Alkaliphilus
metalliredigens QYMF|Rep: Respiratory-chain NADH
dehydrogenase domain, 51 kDa subunit - Alkaliphilus
metalliredigens QYMF
Length = 448
Score = 48.4 bits (110), Expect = 2e-04
Identities = 33/98 (33%), Positives = 52/98 (53%)
Frame = +2
Query: 332 IVNEMKTSGLRGRGGAGFPTGMKWSFMNKPSDGRPKYLVVNADEGEPGTCKDREIMRHDP 511
I+ ++ +G+ G GGAGFPT +K DG +YL+VNA E EP D+ I RH
Sbjct: 3 ILEKIFEAGVVGAGGAGFPTHIKL-------DGVAEYLLVNAVECEPLLETDKFITRHKS 55
Query: 512 HKLVEGCLIAGRAMGAQAAYIYIRGEFYNEASNLQVAI 625
++++ I G + A+ I ++ + E L+ AI
Sbjct: 56 EEIIKAMEIMGNHIQAKEMVIGLKKKNTKEIQALREAI 93
>UniRef50_Q9WY86 Cluster: Electron transport complex protein,
putative; n=5; Bacteria|Rep: Electron transport complex
protein, putative - Thermotoga maritima
Length = 451
Score = 47.6 bits (108), Expect = 3e-04
Identities = 28/95 (29%), Positives = 48/95 (50%)
Frame = +2
Query: 332 IVNEMKTSGLRGRGGAGFPTGMKWSFMNKPSDGRPKYLVVNADEGEPGTCKDREIMRHDP 511
I+ +K +G+ G GGA FPT +K ++ P + + L+VN E EP D +M
Sbjct: 138 ILEIIKKAGIVGLGGAMFPTHVK---LSPPPEKKVDTLIVNGAECEPVLTIDHRLMLERA 194
Query: 512 HKLVEGCLIAGRAMGAQAAYIYIRGEFYNEASNLQ 616
+++G LI + +G Q A + + + NL+
Sbjct: 195 EDILQGILIMMKVLGVQKAVVGVESNKMDAYHNLK 229
>UniRef50_A4CB98 Cluster: Electron transport complex protein RnfC;
n=3; Alteromonadales|Rep: Electron transport complex
protein RnfC - Pseudoalteromonas tunicata D2
Length = 872
Score = 47.6 bits (108), Expect = 3e-04
Identities = 33/107 (30%), Positives = 52/107 (48%)
Frame = +2
Query: 332 IVNEMKTSGLRGRGGAGFPTGMKWSFMNKPSDGRPKYLVVNADEGEPGTCKDREIMRHDP 511
I+N+++++G+ G GGAGF T +K + K YL+VN E EP D +M+
Sbjct: 136 IINKIRSAGISGMGGAGFATYVKAQPLQKID-----YLIVNGVECEPYITSDDRLMQEHA 190
Query: 512 HKLVEGCLIAGRAMGAQAAYIYIRGEFYNEASNLQVAIAEAYQAGLI 652
++EG LI + + I I + +Q A A+ Y LI
Sbjct: 191 TTIIEGSLILAHVLKPERILIGIEDNKPEAIAAMQAA-AKPYPHILI 236
>UniRef50_Q482U5 Cluster: Electron transport complex, RnfABCDGE
type, C subunit; n=1; Colwellia psychrerythraea 34H|Rep:
Electron transport complex, RnfABCDGE type, C subunit -
Colwellia psychrerythraea (strain 34H / ATCC BAA-681)
(Vibriopsychroerythus)
Length = 788
Score = 47.2 bits (107), Expect = 4e-04
Identities = 33/99 (33%), Positives = 47/99 (47%)
Frame = +2
Query: 332 IVNEMKTSGLRGRGGAGFPTGMKWSFMNKPSDGRPKYLVVNADEGEPGTCKDREIMRHDP 511
IV ++ +G+ G GGAGFPT +K S +KP K+L++N E EP D +M
Sbjct: 137 IVKKIANAGIAGMGGAGFPTHIKVS--SKPD---IKFLIINGAECEPYITADDLLMMEQS 191
Query: 512 HKLVEGCLIAGRAMGAQAAYIYIRGEFYNEASNLQVAIA 628
+ +V+G I R + I I LQ A A
Sbjct: 192 NAIVDGIKILDRLLTPTVILIGIEANKPKAIKALQKATA 230
>UniRef50_A6NTM2 Cluster: Putative uncharacterized protein; n=1;
Bacteroides capillosus ATCC 29799|Rep: Putative
uncharacterized protein - Bacteroides capillosus ATCC
29799
Length = 452
Score = 46.8 bits (106), Expect = 6e-04
Identities = 29/99 (29%), Positives = 51/99 (51%)
Frame = +2
Query: 332 IVNEMKTSGLRGRGGAGFPTGMKWSFMNKPSDGRPKYLVVNADEGEPGTCKDREIMRHDP 511
+ +K +G+ G GGAGFPT +K S + + +VNA E EP D+ + R P
Sbjct: 3 LTEAVKAAGVVGAGGAGFPTHVKLS-------AKAECFLVNAAECEPLIETDKYLCRTFP 55
Query: 512 HKLVEGCLIAGRAMGAQAAYIYIRGEFYNEASNLQVAIA 628
++V +GA+ I ++G++ E + L+ +I+
Sbjct: 56 DRIVAAAAAIAAHLGAKRTVIALKGKYKAEIAALEDSIS 94
>UniRef50_Q0PIB6 Cluster: Ethanolamine utilization Fe-S center
protein eut; n=1; Heliobacillus mobilis|Rep:
Ethanolamine utilization Fe-S center protein eut -
Heliobacillus mobilis
Length = 444
Score = 46.4 bits (105), Expect = 7e-04
Identities = 29/87 (33%), Positives = 47/87 (54%)
Frame = +2
Query: 332 IVNEMKTSGLRGRGGAGFPTGMKWSFMNKPSDGRPKYLVVNADEGEPGTCKDREIMRHDP 511
IV +K +G+ G GGAGFPT +K MN +D ++ N E EP + +M +
Sbjct: 5 IVKAVKEAGVVGAGGAGFPTHIK---MNASAD----IIIANGAECEPLLRSHQHLMAAES 57
Query: 512 HKLVEGCLIAGRAMGAQAAYIYIRGEF 592
++V G + A GAQ +YI ++ ++
Sbjct: 58 DRVVLGLIAVMLATGAQKSYIGLKKKY 84
>UniRef50_Q8AA47 Cluster: Na+-transporting NADH:ubiquinone
oxidoreductase, Electron transport complex protein rnfC;
n=10; Bacteroidetes|Rep: Na+-transporting
NADH:ubiquinone oxidoreductase, Electron transport
complex protein rnfC - Bacteroides thetaiotaomicron
Length = 445
Score = 46.0 bits (104), Expect = 0.001
Identities = 35/118 (29%), Positives = 59/118 (50%)
Frame = +2
Query: 296 LTKEILLKGTDWIVNEMKTSGLRGRGGAGFPTGMKWSFMNKPSDGRPKYLVVNADEGEPG 475
L KE L + IV ++ +G+ G GGA FPT +K + P + + +++NA E EP
Sbjct: 115 LVKECELSSEE-IVKKIADAGIVGLGGACFPTQVK---LCPPPSFKAECVIINAVECEPY 170
Query: 476 TCKDREIMRHDPHKLVEGCLIAGRAMGAQAAYIYIRGEFYNEASNLQVAIAEAYQAGL 649
D ++M +++ G I +A+ A+I I +A L +A +Y AG+
Sbjct: 171 LTADHQLMLEHAEEVMVGVSILMKAVKVNKAFIGIENN-KPDAIELMTKVASSY-AGI 226
>UniRef50_Q2SKU6 Cluster: Predicted NADH:ubiquinone oxidoreductase,
subunit RnfC; n=4; Proteobacteria|Rep: Predicted
NADH:ubiquinone oxidoreductase, subunit RnfC - Hahella
chejuensis (strain KCTC 2396)
Length = 821
Score = 45.6 bits (103), Expect = 0.001
Identities = 27/97 (27%), Positives = 47/97 (48%)
Frame = +2
Query: 332 IVNEMKTSGLRGRGGAGFPTGMKWSFMNKPSDGRPKYLVVNADEGEPGTCKDREIMRHDP 511
++ ++ G+ G GGAGFPT +K ++ P + + L++NA E EP D +MR
Sbjct: 127 LLERVRQGGIAGMGGAGFPTAIK---LHPPRNDKVNALILNAAECEPYITADDMLMRERA 183
Query: 512 HKLVEGCLIAGRAMGAQAAYIYIRGEFYNEASNLQVA 622
+++ G I + + + I I + LQ A
Sbjct: 184 DEVIRGMEIMAQLLEPEECLIGIEDNKPEAIAALQQA 220
>UniRef50_Q1Q5X5 Cluster: Conserved hypothetical iron sulfur
protein; n=1; Candidatus Kuenenia stuttgartiensis|Rep:
Conserved hypothetical iron sulfur protein - Candidatus
Kuenenia stuttgartiensis
Length = 446
Score = 45.6 bits (103), Expect = 0.001
Identities = 25/77 (32%), Positives = 44/77 (57%)
Frame = +2
Query: 350 TSGLRGRGGAGFPTGMKWSFMNKPSDGRPKYLVVNADEGEPGTCKDREIMRHDPHKLVEG 529
++G+ G GGA FPT +K + P D +V+N E EP D +MR++ ++++EG
Sbjct: 139 SAGIVGLGGATFPTHVK---LTPPKDKTIDTIVMNGAECEPYLTCDHYVMRNNANEVLEG 195
Query: 530 CLIAGRAMGAQAAYIYI 580
+ + +G + A+I I
Sbjct: 196 LRLVMKCIGCKKAHIGI 212
>UniRef50_A1AVH8 Cluster: Electron transport complex, RnfABCDGE
type, C subunit; n=2; sulfur-oxidizing symbionts|Rep:
Electron transport complex, RnfABCDGE type, C subunit -
Ruthia magnifica subsp. Calyptogena magnifica
Length = 497
Score = 45.6 bits (103), Expect = 0.001
Identities = 27/86 (31%), Positives = 45/86 (52%)
Frame = +2
Query: 332 IVNEMKTSGLRGRGGAGFPTGMKWSFMNKPSDGRPKYLVVNADEGEPGTCKDREIMRHDP 511
+++ ++ SG+ G GGAGFPT +K + + L++N E EPG D +M+ P
Sbjct: 126 MIDCIQKSGIVGLGGAGFPTHVKLGKIKQCHT-----LIINGTECEPGVMCDNALMQFYP 180
Query: 512 HKLVEGCLIAGRAMGAQAAYIYIRGE 589
+++ G I GA+ A I I +
Sbjct: 181 REIIRGVEILLYICGAERAIIAIEDD 206
>UniRef50_Q8RIJ6 Cluster: Nitrogen fixation iron-sulphur protein
RNFC; n=6; Bacteria|Rep: Nitrogen fixation iron-sulphur
protein RNFC - Fusobacterium nucleatum subsp. nucleatum
Length = 441
Score = 45.2 bits (102), Expect = 0.002
Identities = 25/83 (30%), Positives = 43/83 (51%)
Frame = +2
Query: 332 IVNEMKTSGLRGRGGAGFPTGMKWSFMNKPSDGRPKYLVVNADEGEPGTCKDREIMRHDP 511
+++ ++ G+ G GGA FPT +K +N P + + L++N E EP D +M +P
Sbjct: 129 LLDIIREKGIVGIGGATFPTHVK---LNPPPNTQLDSLILNGAECEPYLNSDNRLMLENP 185
Query: 512 HKLVEGCLIAGRAMGAQAAYIYI 580
+VEG I + + Y+ I
Sbjct: 186 KSIVEGIKIIKKILNVPNVYVGI 208
>UniRef50_Q31GU4 Cluster: NADH oxidoreductase, RnfABCDGE type, C
subunit; n=1; Thiomicrospira crunogena XCL-2|Rep: NADH
oxidoreductase, RnfABCDGE type, C subunit -
Thiomicrospira crunogena (strain XCL-2)
Length = 704
Score = 45.2 bits (102), Expect = 0.002
Identities = 26/69 (37%), Positives = 39/69 (56%), Gaps = 1/69 (1%)
Frame = +2
Query: 353 SGLRGRGGAGFPTGMKWSFMNKPSD-GRPKYLVVNADEGEPGTCKDREIMRHDPHKLVEG 529
+G+ G GGAGFPT F PS G+ KYL++N E EP D +M+ +V+G
Sbjct: 159 AGIVGMGGAGFPT-----FAKIPSQPGQIKYLLINGAECEPFITCDDMLMQTRAEDIVQG 213
Query: 530 CLIAGRAMG 556
+I +++G
Sbjct: 214 AMIVAQSLG 222
>UniRef50_Q18V42 Cluster: Respiratory-chain NADH dehydrogenase
domain, 51 kDa subunit; n=3; Peptococcaceae|Rep:
Respiratory-chain NADH dehydrogenase domain, 51 kDa
subunit - Desulfitobacterium hafniense (strain DCB-2)
Length = 451
Score = 45.2 bits (102), Expect = 0.002
Identities = 27/99 (27%), Positives = 53/99 (53%)
Frame = +2
Query: 332 IVNEMKTSGLRGRGGAGFPTGMKWSFMNKPSDGRPKYLVVNADEGEPGTCKDREIMRHDP 511
++ ++K +G+ G GGAGFPT +K + + + ++VN E EP D+++M
Sbjct: 5 LIEKIKKAGVVGAGGAGFPTHVK-------VNSKARTVLVNGAECEPLLRVDQQLMAGQA 57
Query: 512 HKLVEGCLIAGRAMGAQAAYIYIRGEFYNEASNLQVAIA 628
K+V G + GA+ I ++ ++++ S L+ I+
Sbjct: 58 SKVVMGLELVMSVTGAKEGIISLKHKYHDAISALEKEIS 96
>UniRef50_Q0VP39 Cluster: Electron transport complex protein rnfC;
n=4; Proteobacteria|Rep: Electron transport complex
protein rnfC - Alcanivorax borkumensis (strain SK2 /
ATCC 700651 / DSM 11573)
Length = 991
Score = 45.2 bits (102), Expect = 0.002
Identities = 24/66 (36%), Positives = 38/66 (57%)
Frame = +2
Query: 332 IVNEMKTSGLRGRGGAGFPTGMKWSFMNKPSDGRPKYLVVNADEGEPGTCKDREIMRHDP 511
+V+ ++ +G+ G GGAGFPT +K +N R + L++NA E EP D +MR
Sbjct: 156 LVDIIRHAGIAGMGGAGFPTSIK---VNLGDHQRVEQLIINAVECEPYITADDRLMRERA 212
Query: 512 HKLVEG 529
++V G
Sbjct: 213 EQIVTG 218
>UniRef50_Q603B2 Cluster: Electron transport complex, C subunit;
n=1; Methylococcus capsulatus|Rep: Electron transport
complex, C subunit - Methylococcus capsulatus
Length = 523
Score = 44.8 bits (101), Expect = 0.002
Identities = 25/79 (31%), Positives = 39/79 (49%)
Frame = +2
Query: 353 SGLRGRGGAGFPTGMKWSFMNKPSDGRPKYLVVNADEGEPGTCKDREIMRHDPHKLVEGC 532
+G+ G GGA FPT +K P L++N E EP D ++RH P +++EG
Sbjct: 134 AGIVGLGGAAFPTAVK----TDPGHRAIDTLILNGAECEPYITCDDSLLRHFPREVLEGA 189
Query: 533 LIAGRAMGAQAAYIYIRGE 589
I R +G + + I +
Sbjct: 190 RILMRVLGVERCLLGIEDD 208
>UniRef50_Q2J9U3 Cluster: Respiratory-chain NADH dehydrogenase
domain, 51 kDa subunit; n=2; Frankia|Rep:
Respiratory-chain NADH dehydrogenase domain, 51 kDa
subunit - Frankia sp. (strain CcI3)
Length = 510
Score = 44.4 bits (100), Expect = 0.003
Identities = 18/47 (38%), Positives = 31/47 (65%)
Frame = +2
Query: 443 LVVNADEGEPGTCKDREIMRHDPHKLVEGCLIAGRAMGAQAAYIYIR 583
+V NA EGEP + KD ++ PH +++G +A A+GA A++Y++
Sbjct: 166 VVANAAEGEPESAKDVTLLTVAPHLVLDGLQLAAEAVGADDAFVYLK 212
>UniRef50_Q9KT88 Cluster: Electron transport complex protein rnfC;
n=82; Gammaproteobacteria|Rep: Electron transport
complex protein rnfC - Vibrio cholerae
Length = 774
Score = 44.4 bits (100), Expect = 0.003
Identities = 28/93 (30%), Positives = 44/93 (47%)
Frame = +2
Query: 344 MKTSGLRGRGGAGFPTGMKWSFMNKPSDGRPKYLVVNADEGEPGTCKDREIMRHDPHKLV 523
++ +G+ G GGAGFPT K + R + L++NA E EP D +MR H+++
Sbjct: 140 IRQAGISGMGGAGFPTAKKL----QSGLSRTEILIINAAECEPYITADDVLMRQYAHEII 195
Query: 524 EGCLIAGRAMGAQAAYIYIRGEFYNEASNLQVA 622
+G I + + I I + LQ A
Sbjct: 196 QGIEIVEHILKPKLTIIGIEDNKPEAVAALQQA 228
>UniRef50_A6TUS7 Cluster: Respiratory-chain NADH dehydrogenase
domain, 51 kDa subunit; n=5; Clostridiales|Rep:
Respiratory-chain NADH dehydrogenase domain, 51 kDa
subunit - Alkaliphilus metalliredigens QYMF
Length = 445
Score = 44.0 bits (99), Expect = 0.004
Identities = 27/98 (27%), Positives = 53/98 (54%)
Frame = +2
Query: 338 NEMKTSGLRGRGGAGFPTGMKWSFMNKPSDGRPKYLVVNADEGEPGTCKDREIMRHDPHK 517
+++K +G+ G GGAGFPT +K D + +++++N E EP D+++M + P +
Sbjct: 5 DQIKEAGVIGAGGAGFPTHVK-------LDAKAEFVLLNGAECEPLLRVDQQLMEYFPEE 57
Query: 518 LVEGCLIAGRAMGAQAAYIYIRGEFYNEASNLQVAIAE 631
+++G A + + + A I I+ + L+ I E
Sbjct: 58 VIKGLEKARQHVKGKKALIGIKEKHTKVIDKLERKIKE 95
>UniRef50_Q1FMT5 Cluster: Respiratory-chain NADH dehydrogenase
domain, 51 kDa subunit; n=2; Clostridiales|Rep:
Respiratory-chain NADH dehydrogenase domain, 51 kDa
subunit - Clostridium phytofermentans ISDg
Length = 442
Score = 43.2 bits (97), Expect = 0.007
Identities = 29/99 (29%), Positives = 52/99 (52%)
Frame = +2
Query: 344 MKTSGLRGRGGAGFPTGMKWSFMNKPSDGRPKYLVVNADEGEPGTCKDREIMRHDPHKLV 523
+K G+ G GGAGFPT K F NK +++N E EP R+++R ++++
Sbjct: 11 VKEYGICGAGGAGFPTYAK--FSNKVDT-----IILNCAECEPLLKLHRQLLRDRAYEVL 63
Query: 524 EGCLIAGRAMGAQAAYIYIRGEFYNEASNLQVAIAEAYQ 640
+ I ++GA+ A I ++ + N + ++ I AY+
Sbjct: 64 KAFSIIAESIGAKEAIIVVKPSYKNTIAAVEAEIG-AYK 101
>UniRef50_A1WUZ0 Cluster: Electron transport complex, RnfABCDGE
type, C subunit precursor; n=10;
Gammaproteobacteria|Rep: Electron transport complex,
RnfABCDGE type, C subunit precursor - Halorhodospira
halophila (strain DSM 244 / SL1)
(Ectothiorhodospirahalophila (strain DSM 244 / SL1))
Length = 681
Score = 43.2 bits (97), Expect = 0.007
Identities = 29/106 (27%), Positives = 52/106 (49%)
Frame = +2
Query: 332 IVNEMKTSGLRGRGGAGFPTGMKWSFMNKPSDGRPKYLVVNADEGEPGTCKDREIMRHDP 511
++ + +G+RG GGA FP+ +K + + LVVN E + D ++R
Sbjct: 315 LLRRIGEAGVRGMGGAAFPSALK---LADGARSGVDTLVVNGVECDTYLTCDETLLRMRA 371
Query: 512 HKLVEGCLIAGRAMGAQAAYIYIRGEFYNEASNLQVAIAEAYQAGL 649
+++G IA RA GA+ + ++ A+ + AI EA +A +
Sbjct: 372 AAIIDGARIAARACGAERILVAVKNSAPEAAAAAEAAI-EASEADI 416
>UniRef50_Q52716 Cluster: Electron transport complex protein rnfC;
n=4; Rhodobacter|Rep: Electron transport complex protein
rnfC - Rhodobacter capsulatus (Rhodopseudomonas
capsulata)
Length = 519
Score = 43.2 bits (97), Expect = 0.007
Identities = 27/84 (32%), Positives = 45/84 (53%), Gaps = 1/84 (1%)
Frame = +2
Query: 332 IVNEMKTSGLRGRGGAGFPTGMKWSFMNKPSDGRPKYLVVNADEGEPG-TCKDREIMRHD 508
I ++ +G+ G GGA FP+ +K +N + L++N E EP TC DR +MR
Sbjct: 138 IAAQVAAAGIVGMGGATFPSAVK---LNLRAKYDLTTLIINGAECEPYLTCDDR-LMRER 193
Query: 509 PHKLVEGCLIAGRAMGAQAAYIYI 580
++ +G I RA+G + ++ I
Sbjct: 194 AEEIADGIGIMARALGVKQVFVAI 217
>UniRef50_A6FIW1 Cluster: Electron transport complex protein RnfC;
n=1; Moritella sp. PE36|Rep: Electron transport complex
protein RnfC - Moritella sp. PE36
Length = 931
Score = 42.3 bits (95), Expect = 0.012
Identities = 30/102 (29%), Positives = 48/102 (47%), Gaps = 1/102 (0%)
Frame = +2
Query: 323 TDWIVNEMKTSGLRGRGGAGFPTGMKWSFMNKPSDGRP-KYLVVNADEGEPGTCKDREIM 499
T + + +G+ G GGAGFPT +K +D +P ++L++NA E EP D +M
Sbjct: 133 TSELQQHISQAGVAGMGGAGFPTAVKL------NDRQPIEFLLINAAECEPYITSDDVLM 186
Query: 500 RHDPHKLVEGCLIAGRAMGAQAAYIYIRGEFYNEASNLQVAI 625
R +++G I + I I + A L+ AI
Sbjct: 187 RERADDIIQGIEILRHMIKPALCVIGIEDNKPDAAQALETAI 228
>UniRef50_A4B3H4 Cluster: Electron transport complex protein RnfC;
n=1; Alteromonas macleodii 'Deep ecotype'|Rep: Electron
transport complex protein RnfC - Alteromonas macleodii
'Deep ecotype'
Length = 852
Score = 42.3 bits (95), Expect = 0.012
Identities = 25/83 (30%), Positives = 44/83 (53%)
Frame = +2
Query: 332 IVNEMKTSGLRGRGGAGFPTGMKWSFMNKPSDGRPKYLVVNADEGEPGTCKDREIMRHDP 511
++ + +G+ G GGAGFPT +K S +KP + +L++N E EP D +MR
Sbjct: 140 LIEAICQAGISGMGGAGFPTHIKTS-TSKPVE----FLILNGIECEPYITSDDRLMREHA 194
Query: 512 HKLVEGCLIAGRAMGAQAAYIYI 580
++ +G I +G +A + +
Sbjct: 195 WQIRQGLDILTHLIGPKAIIVAV 217
>UniRef50_Q1EUM7 Cluster: Respiratory-chain NADH dehydrogenase
domain, 51 kDa subunit; n=1; Clostridium oremlandii
OhILAs|Rep: Respiratory-chain NADH dehydrogenase domain,
51 kDa subunit - Clostridium oremlandii OhILAs
Length = 388
Score = 41.9 bits (94), Expect = 0.016
Identities = 28/92 (30%), Positives = 43/92 (46%)
Frame = +2
Query: 308 ILLKGTDWIVNEMKTSGLRGRGGAGFPTGMKWSFMNKPSDGRPKYLVVNADEGEPGTCKD 487
+++K TD + +K +G+ G GGAGFPT +K D Y++VNA E EP +
Sbjct: 70 MMIKATDNYLEAIKEAGVVGAGGAGFPTHIKLDV-----DLTGGYVIVNAAECEPVLNHN 124
Query: 488 REIMRHDPHKLVEGCLIAGRAMGAQAAYIYIR 583
+ P ++ G A YI I+
Sbjct: 125 MLAIEKQPDLILRGLKYVMEITKAAKGYIAIK 156
>UniRef50_Q02B56 Cluster: Respiratory-chain NADH dehydrogenase
domain, 51 kDa subunit precursor; n=1; Solibacter
usitatus Ellin6076|Rep: Respiratory-chain NADH
dehydrogenase domain, 51 kDa subunit precursor -
Solibacter usitatus (strain Ellin6076)
Length = 436
Score = 41.9 bits (94), Expect = 0.016
Identities = 24/74 (32%), Positives = 40/74 (54%)
Frame = +2
Query: 341 EMKTSGLRGRGGAGFPTGMKWSFMNKPSDGRPKYLVVNADEGEPGTCKDREIMRHDPHKL 520
+++ G+ G GGAGFPT +K + + ++++ N E EP KD E+M+H +
Sbjct: 5 KLREFGVVGAGGAGFPTYVK-------AQSQVEFMIANGAECEPLIHKDAELMKHFAPGI 57
Query: 521 VEGCLIAGRAMGAQ 562
++G A GAQ
Sbjct: 58 LDGMTSMMSATGAQ 71
>UniRef50_A6NT39 Cluster: Putative uncharacterized protein; n=1;
Bacteroides capillosus ATCC 29799|Rep: Putative
uncharacterized protein - Bacteroides capillosus ATCC
29799
Length = 454
Score = 41.9 bits (94), Expect = 0.016
Identities = 28/84 (33%), Positives = 41/84 (48%)
Frame = +2
Query: 332 IVNEMKTSGLRGRGGAGFPTGMKWSFMNKPSDGRPKYLVVNADEGEPGTCKDREIMRHDP 511
+++ ++ SGL G GGAGFPT W +N D LV+N E EP D MR
Sbjct: 143 LLDAVRKSGLVGLGGAGFPT---WVKLNATVD----RLVINGSECEPYCTVDYIAMRDYA 195
Query: 512 HKLVEGCLIAGRAMGAQAAYIYIR 583
+ EG I +G + A + ++
Sbjct: 196 ADMAEGVRIVKTLLGIEKAIVGVK 219
>UniRef50_A3DI53 Cluster: Electron transport complex, RnfABCDGE
type, C subunit; n=1; Clostridium thermocellum ATCC
27405|Rep: Electron transport complex, RnfABCDGE type, C
subunit - Clostridium thermocellum (strain ATCC 27405 /
DSM 1237)
Length = 439
Score = 41.9 bits (94), Expect = 0.016
Identities = 29/83 (34%), Positives = 44/83 (53%), Gaps = 1/83 (1%)
Frame = +2
Query: 335 VNEMKTSGLRGRGGAGFPTGMKWSFMNKPSDGRPKYLVVNADEGEPGTCKD-REIMRHDP 511
++ ++ SGL G GGAGFP +K ++ P D + L++NA E EP D REI+ +
Sbjct: 123 ISAIRESGLVGLGGAGFPAHVK---LSPPPDKKIDTLIINAAECEPYITSDYREIIENS- 178
Query: 512 HKLVEGCLIAGRAMGAQAAYIYI 580
+V G I +G + I I
Sbjct: 179 WNVVSGINIIMEILGIENVLIGI 201
>UniRef50_A1U014 Cluster: Respiratory-chain NADH dehydrogenase
domain, 51 kDa subunit; n=2; Gammaproteobacteria|Rep:
Respiratory-chain NADH dehydrogenase domain, 51 kDa
subunit - Marinobacter aquaeolei (strain ATCC 700491 /
DSM 11845 / VT8)(Marinobacter hydrocarbonoclasticus
(strain DSM 11845))
Length = 449
Score = 41.9 bits (94), Expect = 0.016
Identities = 25/95 (26%), Positives = 48/95 (50%)
Frame = +2
Query: 332 IVNEMKTSGLRGRGGAGFPTGMKWSFMNKPSDGRPKYLVVNADEGEPGTCKDREIMRHDP 511
+V +++ +G+ G GGAGFP+ +K R L+ N E EP KD+ +++
Sbjct: 10 LVEKVRNAGVVGAGGAGFPSYVK-------IQARADVLIANGAECEPLLYKDQTVIQRFS 62
Query: 512 HKLVEGCLIAGRAMGAQAAYIYIRGEFYNEASNLQ 616
+L++G + GA I I+ + + S+++
Sbjct: 63 AELLQGMALLMEQTGASRGVIAIKEKHQDSISHIE 97
>UniRef50_A5N7M5 Cluster: RnfC; n=1; Clostridium kluyveri DSM
555|Rep: RnfC - Clostridium kluyveri DSM 555
Length = 452
Score = 41.1 bits (92), Expect = 0.027
Identities = 22/83 (26%), Positives = 45/83 (54%)
Frame = +2
Query: 332 IVNEMKTSGLRGRGGAGFPTGMKWSFMNKPSDGRPKYLVVNADEGEPGTCKDREIMRHDP 511
I++ ++ +G+ G GGA FP+ +K ++ P+D + ++ ++N E EP D M
Sbjct: 124 IMSIIREAGIVGMGGATFPSHVK---LSPPADKKVEFFILNGAECEPYLTSDYRSMLEYT 180
Query: 512 HKLVEGCLIAGRAMGAQAAYIYI 580
++V G I + + A+ ++ I
Sbjct: 181 DRIVSGVKIIMKILKAEQGFVGI 203
>UniRef50_A5EVI2 Cluster: Electron transport complex protein, C
subunit; n=1; Dichelobacter nodosus VCS1703A|Rep:
Electron transport complex protein, C subunit -
Dichelobacter nodosus (strain VCS1703A)
Length = 535
Score = 41.1 bits (92), Expect = 0.027
Identities = 30/94 (31%), Positives = 46/94 (48%), Gaps = 1/94 (1%)
Frame = +2
Query: 356 GLRGRGGAGFPTGMKWSFMNKPSDGRPKYLVVNADEGEPG-TCKDREIMRHDPHKLVEGC 532
G+ G GGAGFPT K + K+LV+NA E EP +C D +I H ++V G
Sbjct: 144 GVVGLGGAGFPTARKLAL-------AAKHLVINAAECEPYISCDDMQIREH-AAQIVRGA 195
Query: 533 LIAGRAMGAQAAYIYIRGEFYNEASNLQVAIAEA 634
++ + + I + + L+ AIA+A
Sbjct: 196 QLSAYILSVDSIRFGIENDKPQAIAALEKAIADA 229
>UniRef50_A7B0F4 Cluster: Putative uncharacterized protein; n=1;
Ruminococcus gnavus ATCC 29149|Rep: Putative
uncharacterized protein - Ruminococcus gnavus ATCC 29149
Length = 457
Score = 40.7 bits (91), Expect = 0.036
Identities = 26/96 (27%), Positives = 48/96 (50%)
Frame = +2
Query: 344 MKTSGLRGRGGAGFPTGMKWSFMNKPSDGRPKYLVVNADEGEPGTCKDREIMRHDPHKLV 523
++ +G+ G GGAGFPT K D R + +++N E EP R+++ ++V
Sbjct: 19 LQQNGIVGAGGAGFPTYAK-------LDQRAETIILNCAECEPLLRLHRQLLEKYAREIV 71
Query: 524 EGCLIAGRAMGAQAAYIYIRGEFYNEASNLQVAIAE 631
+ + G+A+GA+ I I+ + ++ I E
Sbjct: 72 DTFHLVGQAVGAKEVIIGIKKAYKQTIEAVESVIGE 107
>UniRef50_Q9XDM9 Cluster: Propanediol utilization protein; n=15;
Enterobacteriaceae|Rep: Propanediol utilization protein
- Salmonella typhimurium
Length = 451
Score = 40.3 bits (90), Expect = 0.048
Identities = 27/89 (30%), Positives = 44/89 (49%)
Frame = +2
Query: 326 DWIVNEMKTSGLRGRGGAGFPTGMKWSFMNKPSDGRPKYLVVNADEGEPGTCKDREIMRH 505
D I ++ +G+ G GGAGFP +K + + +VNA E EP D+++M
Sbjct: 15 DEIRERVRAAGVVGAGGAGFPAHVK-------LQAQVEIFLVNAAECEPMLKVDQQLMWQ 67
Query: 506 DPHKLVEGCLIAGRAMGAQAAYIYIRGEF 592
+LV G A A GA+ I ++ ++
Sbjct: 68 QAARLVRGVQYAMTATGAREGVIALKEKY 96
>UniRef50_Q2BP71 Cluster: Electron transport complex protein RnfC;
n=5; Gammaproteobacteria|Rep: Electron transport complex
protein RnfC - Neptuniibacter caesariensis
Length = 1047
Score = 40.3 bits (90), Expect = 0.048
Identities = 28/101 (27%), Positives = 47/101 (46%)
Frame = +2
Query: 332 IVNEMKTSGLRGRGGAGFPTGMKWSFMNKPSDGRPKYLVVNADEGEPGTCKDREIMRHDP 511
+++ ++ G+ G GGAGFPT +K ++ D LV+NA E EP D +MR
Sbjct: 127 LLDFIRFRGISGMGGAGFPTDVK---LHLGDDHIVNTLVINAMECEPYITADDMLMREHA 183
Query: 512 HKLVEGCLIAGRAMGAQAAYIYIRGEFYNEASNLQVAIAEA 634
++V+G I + I ++ A+AE+
Sbjct: 184 DQVVKGIEIIAHLLKPHHVMIGTEDNKPQAIRAMEQAVAES 224
>UniRef50_Q1ZEG2 Cluster: Electron transport complex protein RnfC;
n=1; Psychromonas sp. CNPT3|Rep: Electron transport
complex protein RnfC - Psychromonas sp. CNPT3
Length = 839
Score = 40.3 bits (90), Expect = 0.048
Identities = 22/88 (25%), Positives = 45/88 (51%)
Frame = +2
Query: 317 KGTDWIVNEMKTSGLRGRGGAGFPTGMKWSFMNKPSDGRPKYLVVNADEGEPGTCKDREI 496
+ + ++++E++ +G+ G GGAGFPT +K + L++NA E EP D +
Sbjct: 138 QSSHFLIDEIQKAGIVGLGGAGFPTHLKLK-----GHEATQLLLINAAECEPYISADDRL 192
Query: 497 MRHDPHKLVEGCLIAGRAMGAQAAYIYI 580
M+ ++++ G + + + I I
Sbjct: 193 MQEHANEIIAGINVLQHILNPKLTIIAI 220
>UniRef50_Q9CNP2 Cluster: Electron transport complex protein rnfC;
n=21; Gammaproteobacteria|Rep: Electron transport
complex protein rnfC - Pasteurella multocida
Length = 835
Score = 39.9 bits (89), Expect = 0.063
Identities = 26/79 (32%), Positives = 42/79 (53%), Gaps = 1/79 (1%)
Frame = +2
Query: 305 EILLKGTDWIVNEMKTSGLRGRGGAGFPTGMKWSFMNKPSDGRPKYLVVNADEGEPG-TC 481
+ L + + ++ ++ +G+ G GGA FPT K K + K L++N E EP TC
Sbjct: 126 DFLTQTPEKLIEKLYQAGVAGLGGAVFPTAAKLHSAEK----QVKLLIINGAECEPYITC 181
Query: 482 KDREIMRHDPHKLVEGCLI 538
DR +MR +++EG I
Sbjct: 182 DDR-LMRDYADEIIEGTRI 199
>UniRef50_Q1VMJ2 Cluster: Formate dehydrogenase, beta subunit; n=1;
Psychroflexus torquis ATCC 700755|Rep: Formate
dehydrogenase, beta subunit - Psychroflexus torquis ATCC
700755
Length = 243
Score = 39.5 bits (88), Expect = 0.084
Identities = 14/31 (45%), Positives = 22/31 (70%)
Frame = +2
Query: 326 DWIVNEMKTSGLRGRGGAGFPTGMKWSFMNK 418
D ++ +++ S L+G GGAGFPTG KW + +
Sbjct: 212 DSVLTQLENSALKGLGGAGFPTGKKWRIVKQ 242
>UniRef50_A7GJH3 Cluster: Respiratory-chain NADH dehydrogenase
family protein; n=16; Clostridiaceae|Rep:
Respiratory-chain NADH dehydrogenase family protein -
Clostridium botulinum (strain Langeland / NCTC 10281 /
Type F)
Length = 428
Score = 39.5 bits (88), Expect = 0.084
Identities = 29/108 (26%), Positives = 56/108 (51%)
Frame = +2
Query: 311 LLKGTDWIVNEMKTSGLRGRGGAGFPTGMKWSFMNKPSDGRPKYLVVNADEGEPGTCKDR 490
LL+ ++ I++ ++ +G+ G GGAGFPT +K M+ +G ++ NA E EP +
Sbjct: 73 LLESSNNILDLIQAAGIVGMGGAGFPTHIK---MDVNLNG--GVVIANAVECEPLLAHNI 127
Query: 491 EIMRHDPHKLVEGCLIAGRAMGAQAAYIYIRGEFYNEASNLQVAIAEA 634
+ ++P + +G A A+ A I+ + S+L+ I ++
Sbjct: 128 NQIINEPELIYKGLCYAMEAVNASKGVFAIKSKNVEAISSLKNVIKDS 175
>UniRef50_A1WTR7 Cluster: Electron transport complex, RnfABCDGE
type, C subunit; n=1; Halorhodospira halophila SL1|Rep:
Electron transport complex, RnfABCDGE type, C subunit -
Halorhodospira halophila (strain DSM 244 / SL1)
(Ectothiorhodospirahalophila (strain DSM 244 / SL1))
Length = 506
Score = 39.5 bits (88), Expect = 0.084
Identities = 27/76 (35%), Positives = 40/76 (52%), Gaps = 2/76 (2%)
Frame = +2
Query: 353 SGLRGRGGAGFPTGMKWSFMNKPSDGRP-KYLVVNADEGEPG-TCKDREIMRHDPHKLVE 526
+G+ G GGA FP +K G+P L++N E EP TC DR +MR +++
Sbjct: 139 AGIVGMGGAAFPAAVKLGA------GQPVATLILNGGECEPYLTCDDR-LMRERAAGIID 191
Query: 527 GCLIAGRAMGAQAAYI 574
G + RA+GA+ I
Sbjct: 192 GAQLMARALGAERTAI 207
>UniRef50_Q5P537 Cluster: Electron transport complex protein rnfC;
n=10; Proteobacteria|Rep: Electron transport complex
protein rnfC - Azoarcus sp. (strain EbN1) (Aromatoleum
aromaticum (strain EbN1))
Length = 508
Score = 39.1 bits (87), Expect = 0.11
Identities = 25/83 (30%), Positives = 39/83 (46%)
Frame = +2
Query: 332 IVNEMKTSGLRGRGGAGFPTGMKWSFMNKPSDGRPKYLVVNADEGEPGTCKDREIMRHDP 511
I + +G+ G GGA FP+ +K ++ + L++N E EP D +MR
Sbjct: 133 IGRRVSAAGIVGLGGAAFPSAVK---LSGGREANVDLLIINGGECEPFLSCDDRLMRERA 189
Query: 512 HKLVEGCLIAGRAMGAQAAYIYI 580
++G I A GA+ A I I
Sbjct: 190 ADAIDGVAIMLHATGAREARIGI 212
>UniRef50_Q5NLH4 Cluster: NADH:ubiquinone oxidoreductase subunit;
n=1; Zymomonas mobilis|Rep: NADH:ubiquinone
oxidoreductase subunit - Zymomonas mobilis
Length = 487
Score = 39.1 bits (87), Expect = 0.11
Identities = 29/95 (30%), Positives = 44/95 (46%)
Frame = +2
Query: 353 SGLRGRGGAGFPTGMKWSFMNKPSDGRPKYLVVNADEGEPGTCKDREIMRHDPHKLVEGC 532
+G+ G GGA FP +K + + S K +V+N E EP D +M+ +++ G
Sbjct: 134 AGVVGLGGAAFPAAVK---LEQSSQKPIKMVVLNGAECEPYLTGDDRVMQEYADEVISGG 190
Query: 533 LIAGRAMGAQAAYIYIRGEFYNEASNLQVAIAEAY 637
+ A+GA I I EA + AEAY
Sbjct: 191 RLIAHAVGAPKVVIGIERN-KPEALAIMKKTAEAY 224
>UniRef50_Q15RL3 Cluster: Electron transport complex, RnfABCDGE
type, C subunit; n=2; Proteobacteria|Rep: Electron
transport complex, RnfABCDGE type, C subunit -
Pseudoalteromonas atlantica (strain T6c / BAA-1087)
Length = 890
Score = 38.7 bits (86), Expect = 0.15
Identities = 25/103 (24%), Positives = 48/103 (46%)
Frame = +2
Query: 332 IVNEMKTSGLRGRGGAGFPTGMKWSFMNKPSDGRPKYLVVNADEGEPGTCKDREIMRHDP 511
++ + +G+ G GGAGFPT +K + P +++++N E EP D +MR
Sbjct: 144 VLEAICNAGISGMGGAGFPTHIKAA----PKKD-VEFIIINGVECEPYITSDDRLMREHA 198
Query: 512 HKLVEGCLIAGRAMGAQAAYIYIRGEFYNEASNLQVAIAEAYQ 640
++ +G + + + YI I ++VA ++ Q
Sbjct: 199 WQIRQGIDVLCHLLSPKQVYIAIEDNKPEAIEAMRVACQQSEQ 241
>UniRef50_A6PDB0 Cluster: Electron transport complex, RnfABCDGE
type, C subunit; n=1; Shewanella sediminis HAW-EB3|Rep:
Electron transport complex, RnfABCDGE type, C subunit -
Shewanella sediminis HAW-EB3
Length = 842
Score = 38.7 bits (86), Expect = 0.15
Identities = 25/74 (33%), Positives = 39/74 (52%)
Frame = +2
Query: 332 IVNEMKTSGLRGRGGAGFPTGMKWSFMNKPSDGRPKYLVVNADEGEPGTCKDREIMRHDP 511
I+ +++ +G+ G GGA FPT +K +N SD + L++NA E EP D +MR
Sbjct: 139 ILRKIQDAGIAGLGGAAFPTHIK---LNPASD--IELLIINAIECEPYITADDMLMREHS 193
Query: 512 HKLVEGCLIAGRAM 553
+ G I R +
Sbjct: 194 DAICLGIAIIHRLL 207
>UniRef50_A6BIN7 Cluster: Putative uncharacterized protein; n=1;
Dorea longicatena DSM 13814|Rep: Putative
uncharacterized protein - Dorea longicatena DSM 13814
Length = 471
Score = 38.7 bits (86), Expect = 0.15
Identities = 33/111 (29%), Positives = 51/111 (45%), Gaps = 17/111 (15%)
Frame = +2
Query: 344 MKTSGLRGRGGAGFPTGMKWSF-MNKPSDGR---------PK-------YLVVNADEGEP 472
+K +G+ G GGAGFPTG+K + + + G PK Y++VNA E EP
Sbjct: 90 VKAAGIVGMGGAGFPTGVKLNINLEETPMGELDPEINPELPKDFKLDCGYILVNAAECEP 149
Query: 473 GTCKDREIMRHDPHKLVEGCLIAGRAMGAQAAYIYIRGEFYNEASNLQVAI 625
G + + KL+ G + A+ A I I+ + + LQ A+
Sbjct: 150 GLEHNTRQIEEQSDKLIRGIKYSMEITHAKKAIIAIKKKHHKAIKVLQKAL 200
>UniRef50_Q3A7W8 Cluster: Predicted NADH:ubiquinone oxidoreductase,
subunit RnfC; n=1; Pelobacter carbinolicus DSM 2380|Rep:
Predicted NADH:ubiquinone oxidoreductase, subunit RnfC -
Pelobacter carbinolicus (strain DSM 2380 / Gra Bd 1)
Length = 437
Score = 37.9 bits (84), Expect = 0.26
Identities = 22/81 (27%), Positives = 41/81 (50%)
Frame = +2
Query: 332 IVNEMKTSGLRGRGGAGFPTGMKWSFMNKPSDGRPKYLVVNADEGEPGTCKDREIMRHDP 511
+++ ++ +G+ G GGA FP+ +K ++ P D ++VNA E EP DR +
Sbjct: 124 MLDRIREAGVVGMGGAAFPSHVK---LDPPRDKTIDTVIVNAVECEPWLTADRRTLLERM 180
Query: 512 HKLVEGCLIAGRAMGAQAAYI 574
K++ G + + A +I
Sbjct: 181 EKVLTGIEVLQKITDADHVWI 201
>UniRef50_Q2NSZ7 Cluster: Putative iron-sulfur binding NADH
dehydrogenase; n=1; Sodalis glossinidius str.
'morsitans'|Rep: Putative iron-sulfur binding NADH
dehydrogenase - Sodalis glossinidius (strain morsitans)
Length = 663
Score = 37.9 bits (84), Expect = 0.26
Identities = 22/69 (31%), Positives = 33/69 (47%)
Frame = +2
Query: 332 IVNEMKTSGLRGRGGAGFPTGMKWSFMNKPSDGRPKYLVVNADEGEPGTCKDREIMRHDP 511
+++ + SG+ G GGAGFPT K + + L++N E EP D +MR
Sbjct: 135 LLSRIHESGIAGLGGAGFPTAAKLG----GGEHGVETLIINGAECEPYITADDRLMREHA 190
Query: 512 HKLVEGCLI 538
+V G I
Sbjct: 191 RDIVTGMAI 199
>UniRef50_Q1N6T4 Cluster: Electron transport complex protein RnfC;
n=1; Oceanobacter sp. RED65|Rep: Electron transport
complex protein RnfC - Oceanobacter sp. RED65
Length = 727
Score = 37.9 bits (84), Expect = 0.26
Identities = 25/68 (36%), Positives = 37/68 (54%)
Frame = +2
Query: 326 DWIVNEMKTSGLRGRGGAGFPTGMKWSFMNKPSDGRPKYLVVNADEGEPGTCKDREIMRH 505
D +++ ++ SG+ G GGA FPT +K P + R L++NA E EP D +MR
Sbjct: 129 DTLIDIIQQSGITGLGGASFPTHVKTCV---PEE-RIDTLILNAAECEPYITADDMLMRS 184
Query: 506 DPHKLVEG 529
LV+G
Sbjct: 185 YADGLVKG 192
>UniRef50_A1SSX3 Cluster: Electron transport complex, RnfABCDGE
type, C subunit; n=1; Psychromonas ingrahamii 37|Rep:
Electron transport complex, RnfABCDGE type, C subunit -
Psychromonas ingrahamii (strain 37)
Length = 857
Score = 37.9 bits (84), Expect = 0.26
Identities = 21/66 (31%), Positives = 36/66 (54%)
Frame = +2
Query: 332 IVNEMKTSGLRGRGGAGFPTGMKWSFMNKPSDGRPKYLVVNADEGEPGTCKDREIMRHDP 511
+++ ++ SG+ G GG GFP+ +K S + K L++NA E EP D +M+
Sbjct: 142 LIDLIQQSGIIGMGGGGFPSHLKLS-----NAHNVKLLIINAIECEPYITADDRLMQEHA 196
Query: 512 HKLVEG 529
+L+ G
Sbjct: 197 DQLITG 202
>UniRef50_Q9HYB8 Cluster: Electron transport complex protein rnfC;
n=12; Gammaproteobacteria|Rep: Electron transport
complex protein rnfC - Pseudomonas aeruginosa
Length = 774
Score = 37.5 bits (83), Expect = 0.34
Identities = 27/100 (27%), Positives = 48/100 (48%)
Frame = +2
Query: 332 IVNEMKTSGLRGRGGAGFPTGMKWSFMNKPSDGRPKYLVVNADEGEPGTCKDREIMRHDP 511
++ ++ +G+ G GGAGFPT K +P++ + LVVN E EP D +MR
Sbjct: 127 LLERIRAAGIGGLGGAGFPTAAK--LAARPAE-KIHTLVVNGAECEPYISADDLLMRERA 183
Query: 512 HKLVEGCLIAGRAMGAQAAYIYIRGEFYNEASNLQVAIAE 631
+++ G I + + + + I + + L A+ E
Sbjct: 184 TQVLGGIDILVQILCPEEVLVGIEDDKPEAIAALGAALGE 223
>UniRef50_Q89AW8 Cluster: Electron transport complex protein rnfC;
n=1; Buchnera aphidicola (Baizongia pistaciae)|Rep:
Electron transport complex protein rnfC - Buchnera
aphidicola subsp. Baizongia pistaciae
Length = 505
Score = 37.5 bits (83), Expect = 0.34
Identities = 22/69 (31%), Positives = 37/69 (53%)
Frame = +2
Query: 332 IVNEMKTSGLRGRGGAGFPTGMKWSFMNKPSDGRPKYLVVNADEGEPGTCKDREIMRHDP 511
++N + SG+ G G+GF T K + G+ LVVNA E EP D ++++
Sbjct: 148 LINLIYHSGILGLSGSGFSTSKKLQC----AVGKVHTLVVNAVESEPCVTSDDCLIQNFS 203
Query: 512 HKLVEGCLI 538
++++GC I
Sbjct: 204 KEIIDGCKI 212
>UniRef50_Q5FP48 Cluster: Outer membrane protein; n=2; Gluconobacter
oxydans|Rep: Outer membrane protein - Gluconobacter
oxydans (Gluconobacter suboxydans)
Length = 518
Score = 36.3 bits (80), Expect = 0.78
Identities = 19/73 (26%), Positives = 36/73 (49%), Gaps = 1/73 (1%)
Frame = -2
Query: 384 KPAPPLPRRPDVFISLTIQSVPFSKISFVKYQSPRARAPFNLHSCRP-YKFVKTRSLSAS 208
+P P LPR PD S+ + + P +++ +Y + AR + + P + T + +AS
Sbjct: 294 RPIPDLPRFPDSLPSIVLANRPDIRVAEAEYAADTARVGIAVSNLYPKFMIPLTFNPNAS 353
Query: 207 GPYLSFEGAWVCW 169
Y +F+ + W
Sbjct: 354 AAYQAFQAGGMAW 366
>UniRef50_Q1AWR7 Cluster: Respiratory-chain NADH dehydrogenase
domain, 51 kDa subunit; n=2; Rubrobacter xylanophilus
DSM 9941|Rep: Respiratory-chain NADH dehydrogenase
domain, 51 kDa subunit - Rubrobacter xylanophilus
(strain DSM 9941 / NBRC 16129)
Length = 388
Score = 36.3 bits (80), Expect = 0.78
Identities = 23/64 (35%), Positives = 34/64 (53%), Gaps = 1/64 (1%)
Frame = +2
Query: 302 KEILLKGTDWIVNEMKTSGLRGRGGAGFPTGMKWSFMNKPSDGRP-KYLVVNADEGEPGT 478
+E+ + V+ M+ +G+ G GG GFPT K+ RP +L+VNA E EPG
Sbjct: 10 EEVKALSREEAVDIMQHAGIVGAGGGGFPTYFKYK--------RPLPHLIVNATESEPGY 61
Query: 479 CKDR 490
D+
Sbjct: 62 WGDK 65
>UniRef50_A0L5G6 Cluster: Electron transport complex, RnfABCDGE
type, C subunit; n=1; Magnetococcus sp. MC-1|Rep:
Electron transport complex, RnfABCDGE type, C subunit -
Magnetococcus sp. (strain MC-1)
Length = 605
Score = 36.3 bits (80), Expect = 0.78
Identities = 25/83 (30%), Positives = 42/83 (50%)
Frame = +2
Query: 332 IVNEMKTSGLRGRGGAGFPTGMKWSFMNKPSDGRPKYLVVNADEGEPGTCKDREIMRHDP 511
I + ++ +G+ G GGA FP+ +K ++ P + + + LV+N E EP D +M
Sbjct: 132 IRDAVRHAGIVGLGGATFPSHVK---LSPPGEKKVELLVLNGVECEPYLTCDARLMEERS 188
Query: 512 HKLVEGCLIAGRAMGAQAAYIYI 580
+V G I A+ + A I I
Sbjct: 189 GLIVTGVRIMLHALHCKEAVIGI 211
>UniRef50_Q30W86 Cluster: Electron transfer protein; n=1;
Desulfovibrio desulfuricans G20|Rep: Electron transfer
protein - Desulfovibrio desulfuricans (strain G20)
Length = 442
Score = 35.5 bits (78), Expect = 1.4
Identities = 24/89 (26%), Positives = 42/89 (47%)
Frame = +2
Query: 323 TDWIVNEMKTSGLRGRGGAGFPTGMKWSFMNKPSDGRPKYLVVNADEGEPGTCKDREIMR 502
T V ++++G+ G GGAG PT +K +D ++VN EP D +++
Sbjct: 2 TGQTVECIRSAGVVGAGGAGLPTHIK-------ADASVDTVLVNGASCEPLLMSDPYLIQ 54
Query: 503 HDPHKLVEGCLIAGRAMGAQAAYIYIRGE 589
P ++ G L GA+ I ++G+
Sbjct: 55 AHPDIVIRGLLAVMDCTGARRGIICLKGK 83
>UniRef50_Q3YL96 Cluster: CdiA; n=3; Escherichia coli|Rep: CdiA -
Escherichia coli
Length = 3132
Score = 35.1 bits (77), Expect = 1.8
Identities = 15/24 (62%), Positives = 15/24 (62%)
Frame = +2
Query: 323 TDWIVNEMKTSGLRGRGGAGFPTG 394
T W E KTSGL G GG GF TG
Sbjct: 2182 TSWRFKETKTSGLTGTGGIGFTTG 2205
>UniRef50_A4RAI3 Cluster: Putative uncharacterized protein; n=1;
Magnaporthe grisea|Rep: Putative uncharacterized protein
- Magnaporthe grisea (Rice blast fungus) (Pyricularia
grisea)
Length = 916
Score = 35.1 bits (77), Expect = 1.8
Identities = 28/112 (25%), Positives = 49/112 (43%), Gaps = 1/112 (0%)
Frame = -2
Query: 534 RHPSTSLWGS*RIISLSLQVPGSPSSALTTRYFGRPSEGLFMNDHFIPVGKPAP-PLPRR 358
R PS+ +W L++ V S S T + + G ++D F+ P P P R
Sbjct: 54 RWPSSYVWTKAEERLLTICVVPSAGSLNPTEE--KRAAGTHLDDFFVTTTIPLPLPHARH 111
Query: 357 PDVFISLTIQSVPFSKISFVKYQSPRARAPFNLHSCRPYKFVKTRSLSASGP 202
P ++L I S+ + ++ + Y P R+P + P + S++ GP
Sbjct: 112 PTTVVALFIPSIRGTSVAGMPYTPPTHRSPASSQPSSP-DASRRSSIAGGGP 162
>UniRef50_A7QGL6 Cluster: Chromosome chr12 scaffold_93, whole genome
shotgun sequence; n=1; Vitis vinifera|Rep: Chromosome
chr12 scaffold_93, whole genome shotgun sequence - Vitis
vinifera (Grape)
Length = 322
Score = 34.7 bits (76), Expect = 2.4
Identities = 24/98 (24%), Positives = 45/98 (45%)
Frame = -1
Query: 508 VMTHNLSVFTSTRFTLISINHEIFWTTIRRLVHE*PLHSCWETCSSPASKARCFHFINDP 329
V+T L V FT ISI+++I I +E + W+T ++ +++ R HF P
Sbjct: 185 VLTWALRVLYIFSFTFISIDNKIGRMAIGYFWNEGSFDARWKTNTTTSTETRFLHFTYYP 244
Query: 328 VGSFQ*NLLRQIPVPSGESTLQPPFMSTIQVCENPIAI 215
+ + + + +P T + M I + E+ + I
Sbjct: 245 IRTLEYYVSGLVPSTHFHGTFKKWVMQPINIGEDAVLI 282
>UniRef50_Q0HIH8 Cluster: Electron transport complex, RnfABCDGE
type, C subunit; n=16; Shewanella|Rep: Electron
transport complex, RnfABCDGE type, C subunit -
Shewanella sp. (strain MR-4)
Length = 809
Score = 34.3 bits (75), Expect = 3.1
Identities = 24/101 (23%), Positives = 48/101 (47%)
Frame = +2
Query: 332 IVNEMKTSGLRGRGGAGFPTGMKWSFMNKPSDGRPKYLVVNADEGEPGTCKDREIMRHDP 511
++ ++ +G+ G GGA FP+ +K +N S+ + +++N E EP D +MR
Sbjct: 133 MIAKIHGAGIAGMGGAAFPSHIK---LNPVSE--IELVIINGVECEPYISADDRLMREYS 187
Query: 512 HKLVEGCLIAGRAMGAQAAYIYIRGEFYNEASNLQVAIAEA 634
++ G I R + + I I +Q A++++
Sbjct: 188 QDILAGIGIIHRLLAPKRIVIAIEDNKPEAIKAMQQAVSQS 228
>UniRef50_Q0F0I1 Cluster: Electron transport complex protein RnfC;
n=1; Mariprofundus ferrooxydans PV-1|Rep: Electron
transport complex protein RnfC - Mariprofundus
ferrooxydans PV-1
Length = 521
Score = 34.3 bits (75), Expect = 3.1
Identities = 31/114 (27%), Positives = 49/114 (42%)
Frame = +2
Query: 287 DWYLTKEILLKGTDWIVNEMKTSGLRGRGGAGFPTGMKWSFMNKPSDGRPKYLVVNADEG 466
DW T LL+ + GL G GGA FPT +K + + S + +V+N E
Sbjct: 130 DWRNTDPALLR------ERARMCGLAGLGGAVFPTFIK---LVQDSRFPIETVVLNGIEC 180
Query: 467 EPGTCKDREIMRHDPHKLVEGCLIAGRAMGAQAAYIYIRGEFYNEASNLQVAIA 628
EP D +M +++ G I + +A I I + A ++ A+A
Sbjct: 181 EPWLTTDHRLMLEYADEILTGLAIIMHMVNTDSAIIAIEDNKSDAAEAIEQALA 234
>UniRef50_P57215 Cluster: Electron transport complex protein rnfC;
n=1; Buchnera aphidicola (Acyrthosiphon pisum)|Rep:
Electron transport complex protein rnfC - Buchnera
aphidicola subsp. Acyrthosiphon pisum (Acyrthosiphon
pisumsymbiotic bacterium)
Length = 473
Score = 34.3 bits (75), Expect = 3.1
Identities = 26/95 (27%), Positives = 42/95 (44%)
Frame = +2
Query: 332 IVNEMKTSGLRGRGGAGFPTGMKWSFMNKPSDGRPKYLVVNADEGEPGTCKDREIMRHDP 511
++ + SG+ G GG FP+ K F S R L+VNA E EP D ++ +
Sbjct: 95 LIKIIHQSGVVGLGGGQFPSSKKIIF----SINRAHTLIVNAVESEPYITSDNCLIYNHI 150
Query: 512 HKLVEGCLIAGRAMGAQAAYIYIRGEFYNEASNLQ 616
+++ GC I + I I+ + S +Q
Sbjct: 151 SEILIGCKIICWITKIKTVLIAIQEDNIQSISKIQ 185
>UniRef50_Q82NN9 Cluster: Putative uncharacterized protein; n=1;
Streptomyces avermitilis|Rep: Putative uncharacterized
protein - Streptomyces avermitilis
Length = 170
Score = 33.9 bits (74), Expect = 4.2
Identities = 28/100 (28%), Positives = 44/100 (44%)
Frame = +2
Query: 59 SARNMAGALTRVIQGTKPHLGIIGPLAINVNNVPVRFQQTQAPSKDKYGPLADSDRVFTN 238
S +A LT G + L + VP+ Q + P++D PL + RV
Sbjct: 54 SPGELAADLTVACDGRDSSVRRAAGLEPSYFEVPMDVWQVRVPARD---PLKEG-RVSLT 109
Query: 239 LYGRHEWRLKGALARGDWYLTKEILLKGTDWIVNEMKTSG 358
+ + + L RGD+Y T ++ KGTD + M +SG
Sbjct: 110 V---RDGQFAATLDRGDYYQTSYLIKKGTDGALRPMASSG 146
>UniRef50_A6VVJ2 Cluster: Electron transport complex, RnfABCDGE
type, C subunit; n=2; Marinomonas|Rep: Electron
transport complex, RnfABCDGE type, C subunit -
Marinomonas sp. MWYL1
Length = 981
Score = 33.9 bits (74), Expect = 4.2
Identities = 21/58 (36%), Positives = 30/58 (51%)
Frame = +2
Query: 356 GLRGRGGAGFPTGMKWSFMNKPSDGRPKYLVVNADEGEPGTCKDREIMRHDPHKLVEG 529
G+ G GGAGFPT +K +K + ++NA E EP D ++R +LV G
Sbjct: 137 GIIGMGGAGFPTQVKLQGAHK---NPLTHFIINAAECEPYITADDMLIREKTLELVLG 191
>UniRef50_A6M0M4 Cluster: Respiratory-chain NADH dehydrogenase
domain, 51 kDa subunit; n=1; Clostridium beijerinckii
NCIMB 8052|Rep: Respiratory-chain NADH dehydrogenase
domain, 51 kDa subunit - Clostridium beijerinckii NCIMB
8052
Length = 441
Score = 33.9 bits (74), Expect = 4.2
Identities = 23/99 (23%), Positives = 48/99 (48%)
Frame = +2
Query: 335 VNEMKTSGLRGRGGAGFPTGMKWSFMNKPSDGRPKYLVVNADEGEPGTCKDREIMRHDPH 514
++ +K +G+ G GGAGFPT +K + + K ++VN E EP D+++M
Sbjct: 6 IDLIKDAGIIGAGGAGFPTHVK-------LNAKVKTVIVNGAECEPLLKVDQQLMDKKAD 58
Query: 515 KLVEGCLIAGRAMGAQAAYIYIRGEFYNEASNLQVAIAE 631
+++ ++ I ++G++ + + L I +
Sbjct: 59 EILYALNKVVDETESEVGIIALKGKYKSAINTLNSKIKD 97
>UniRef50_A0JX02 Cluster: Peptidase S9, prolyl oligopeptidase active
site domain protein; n=3; Micrococcineae|Rep: Peptidase
S9, prolyl oligopeptidase active site domain protein -
Arthrobacter sp. (strain FB24)
Length = 701
Score = 33.9 bits (74), Expect = 4.2
Identities = 16/41 (39%), Positives = 22/41 (53%)
Frame = +2
Query: 350 TSGLRGRGGAGFPTGMKWSFMNKPSDGRPKYLVVNADEGEP 472
T G R A P G+ +F+ +DG+P+ VV A GEP
Sbjct: 72 TRGFRDTAPAFSPDGLVLAFLRATADGKPQLYVVEAAGGEP 112
>UniRef50_Q6LTT0 Cluster: Hypothetical type I
restriction-modification system specificity determinant;
n=1; Photobacterium profundum|Rep: Hypothetical type I
restriction-modification system specificity determinant
- Photobacterium profundum (Photobacterium sp. (strain
SS9))
Length = 437
Score = 33.5 bits (73), Expect = 5.5
Identities = 17/40 (42%), Positives = 20/40 (50%)
Frame = +2
Query: 188 SKDKYGPLADSDRVFTNLYGRHEWRLKGALARGDWYLTKE 307
S K G L D +TN YG EW +G GD LT+E
Sbjct: 272 SNVKQGKLVIEDAKYTNEYGYKEWTSRGVPFPGDILLTRE 311
>UniRef50_Q8C4U5 Cluster: 10 days neonate cerebellum cDNA, RIKEN
full-length enriched library, clone:B930072B04
product:hypothetical protein, full insert sequence; n=1;
Mus musculus|Rep: 10 days neonate cerebellum cDNA, RIKEN
full-length enriched library, clone:B930072B04
product:hypothetical protein, full insert sequence - Mus
musculus (Mouse)
Length = 189
Score = 32.7 bits (71), Expect = 9.6
Identities = 23/64 (35%), Positives = 29/64 (45%)
Frame = -1
Query: 400 LHSCWETCSSPASKARCFHFINDPVGSFQ*NLLRQIPVPSGESTLQPPFMSTIQVCENPI 221
L CWET +SPA + + GS + L R PVPSG TL P S V +
Sbjct: 37 LRGCWETETSPALELLPLGHLR---GSGELPLRRLGPVPSGRQTLDSPRASGRDVSSQRL 93
Query: 220 AIGQ 209
G+
Sbjct: 94 REGK 97
>UniRef50_Q6AIR8 Cluster: Related to propanediol utilization
protein; n=2; Desulfotalea psychrophila|Rep: Related to
propanediol utilization protein - Desulfotalea
psychrophila
Length = 447
Score = 32.7 bits (71), Expect = 9.6
Identities = 24/94 (25%), Positives = 41/94 (43%)
Frame = +2
Query: 311 LLKGTDWIVNEMKTSGLRGRGGAGFPTGMKWSFMNKPSDGRPKYLVVNADEGEPGTCKDR 490
++ D ++ + +G+ G GGAGFP +K+ D + ++ N E EP D+
Sbjct: 1 MIMNKDSLLRSILDAGIVGEGGAGFPAHVKY-------DTQVDTVIANGCECEPLLHTDQ 53
Query: 491 EIMRHDPHKLVEGCLIAGRAMGAQAAYIYIRGEF 592
IMR +V GA I I+ ++
Sbjct: 54 HIMRTRAADIVVAMQAIVSVTGATRGVIGIKRKY 87
>UniRef50_Q03BW1 Cluster: ABC-type uncharacterized transport system,
ATPase component; n=1; Lactobacillus casei ATCC 334|Rep:
ABC-type uncharacterized transport system, ATPase
component - Lactobacillus casei (strain ATCC 334)
Length = 244
Score = 32.7 bits (71), Expect = 9.6
Identities = 20/64 (31%), Positives = 31/64 (48%)
Frame = +2
Query: 275 LARGDWYLTKEILLKGTDWIVNEMKTSGLRGRGGAGFPTGMKWSFMNKPSDGRPKYLVVN 454
+A D +++L K ++ N+ K GL GR G+G T N P D + V+
Sbjct: 6 IAHLDKAFDQQVLFKDASFMFNQGKIYGLLGRNGSGKSTLFNMIVRNLPHDHGT--IAVD 63
Query: 455 ADEG 466
AD+G
Sbjct: 64 ADDG 67
>UniRef50_A6PKR4 Cluster: Putative uncharacterized protein
precursor; n=1; Victivallis vadensis ATCC BAA-548|Rep:
Putative uncharacterized protein precursor - Victivallis
vadensis ATCC BAA-548
Length = 1231
Score = 32.7 bits (71), Expect = 9.6
Identities = 23/90 (25%), Positives = 39/90 (43%), Gaps = 5/90 (5%)
Frame = +2
Query: 254 EWRLKGALARGDW-YLTKEILLKGTDWIVNEMKTSGLRG----RGGAGFPTGMKWSFMNK 418
+WR G LA G+W Y+ + G D VN+M+ L G G G P G W+ ++
Sbjct: 130 KWRPAGPLAAGEWAYIRYAVGDGGYDLYVNDMEYPVLAGVEFREEGPGTP-GKIWTLGSE 188
Query: 419 PSDGRPKYLVVNADEGEPGTCKDREIMRHD 508
+ ++ + + R ++R D
Sbjct: 189 KGESVSRFAAIEVHDASRERAARRLLVRED 218
>UniRef50_A4W4W3 Cluster: Filamentous haemagglutinin family outer
membrane protein precursor; n=1; Enterobacter sp.
638|Rep: Filamentous haemagglutinin family outer membrane
protein precursor - Enterobacter sp. 638
Length = 3967
Score = 32.7 bits (71), Expect = 9.6
Identities = 14/24 (58%), Positives = 14/24 (58%)
Frame = +2
Query: 323 TDWIVNEMKTSGLRGRGGAGFPTG 394
TDW E K SGL G GG GF G
Sbjct: 3062 TDWRFKETKKSGLMGTGGIGFTIG 3085
>UniRef50_A1CNT7 Cluster: Fungal specific transcription factor
domain protein; n=6; Trichocomaceae|Rep: Fungal specific
transcription factor domain protein - Aspergillus
clavatus
Length = 852
Score = 32.7 bits (71), Expect = 9.6
Identities = 17/45 (37%), Positives = 23/45 (51%)
Frame = -2
Query: 474 PGSPSSALTTRYFGRPSEGLFMNDHFIPVGKPAPPLPRRPDVFIS 340
P PS+AL + RPS GL M P+ +P PPL ++ S
Sbjct: 36 PQGPSAALVSAPPSRPSSGLRMAHLLQPLAQPPPPLSATTNITTS 80
Database: uniref50
Posted date: Oct 5, 2007 11:19 AM
Number of letters in database: 575,637,011
Number of sequences in database: 1,657,284
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 828,256,250
Number of Sequences: 1657284
Number of extensions: 19102501
Number of successful extensions: 51334
Number of sequences better than 10.0: 155
Number of HSP's better than 10.0 without gapping: 48865
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 51194
length of database: 575,637,011
effective HSP length: 99
effective length of database: 411,565,895
effective search space used: 59677054775
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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