Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P16_F_J06
(736 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC18E5.10 |||iron sulfur cluster assembly protein |Schizosacch... 132 4e-32
SPBC365.02c |cox10||protoheme IX farnesyltransferase|Schizosacch... 30 0.39
SPBC19C7.03 |cyr1|git2|adenylate cyclase|Schizosaccharomyces pom... 28 1.6
SPCC622.15c |||sequence orphan|Schizosaccharomyces pombe|chr 3||... 28 1.6
SPAC3F10.09 |||1-|Schizosaccharomyces pombe|chr 1|||Manual 27 2.8
SPAC1D4.10 |||tRNA endonuclease|Schizosaccharomyces pombe|chr 1|... 27 2.8
SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, wit... 27 3.7
SPCC417.06c |ppk35|mug27|serine/threonine protein kinase Ppk35|S... 27 3.7
SPBC244.02c |||U3 snoRNP-associated protein Utp6 |Schizosaccharo... 26 4.8
SPCC4G3.19 |alp16||gamma tubulin complex subunit Alp16 |Schizosa... 25 8.5
>SPBC18E5.10 |||iron sulfur cluster assembly protein
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 452
Score = 132 bits (320), Expect = 4e-32
Identities = 71/174 (40%), Positives = 105/174 (60%), Gaps = 5/174 (2%)
Frame = +2
Query: 224 RVFTNLYGRHEWRLKGALARGDWYLTKEILLKGTDWIVNEMKTSGLRGRGGAGFPTGMKW 403
R+F NL + R+ ALA G++ EIL I+ ++ S LRGRG GFPTG K
Sbjct: 33 RMFPNLIEKRIRRIDDALADGEYENLSEILKYDPLNIIELVQESELRGRGRYGFPTGEKM 92
Query: 404 SFMNKPSD---GRPK--YLVVNADEGEPGTCKDREIMRHDPHKLVEGCLIAGRAMGAQAA 568
+ K + GR + ++VNA E + G+ KDR ++RH+PHK++EG +IA RA+ A A
Sbjct: 93 LSLYKATSSERGRKEKPVVIVNAAENDIGSFKDRLLLRHEPHKIIEGAIIAARAVEASAC 152
Query: 569 YIYIRGEFYNEASNLQVAIAEAYQAGLIGKNSCGSGYDFDIFVHRGAGAYICGE 730
Y++IR ++Y E +Q I +AY L+GKN G+ ++ +H GAG+YI GE
Sbjct: 153 YLFIRKDYYEETVMMQKCIIQAYAKKLLGKNLLGTSIGLELLIHPGAGSYITGE 206
>SPBC365.02c |cox10||protoheme IX
farnesyltransferase|Schizosaccharomyces pombe|chr
2|||Manual
Length = 387
Score = 29.9 bits (64), Expect = 0.39
Identities = 12/36 (33%), Positives = 22/36 (61%)
Frame = -3
Query: 617 LANCLLHCRIHL*CKCMLLVHPWLGQQLGILPPVCG 510
L N +L+ I+ K + +V+ W+G +G +PP+ G
Sbjct: 194 LGNIVLYMGIYTPLKRISIVNTWVGSLVGAIPPLMG 229
>SPBC19C7.03 |cyr1|git2|adenylate cyclase|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1692
Score = 27.9 bits (59), Expect = 1.6
Identities = 15/46 (32%), Positives = 19/46 (41%)
Frame = -2
Query: 525 STSLWGS*RIISLSLQVPGSPSSALTTRYFGRPSEGLFMNDHFIPV 388
S W + SL P TTR+F RPS G + F+ V
Sbjct: 253 SDDSWKAPESWGTSLPTEAIPKQVFTTRFFARPSLGNRKKEFFLRV 298
>SPCC622.15c |||sequence orphan|Schizosaccharomyces pombe|chr
3|||Manual
Length = 557
Score = 27.9 bits (59), Expect = 1.6
Identities = 15/48 (31%), Positives = 26/48 (54%), Gaps = 1/48 (2%)
Frame = -2
Query: 489 LSLQVPGSPSSALTTRY-FGRPSEGLFMNDHFIPVGKPAPPLPRRPDV 349
L + +PGS + +T ++ P G++ F P+ APP+P P+V
Sbjct: 274 LRVSIPGSQPALVTPKHKMNVPPMGMYPLP-FSPLPSAAPPIPFSPNV 320
>SPAC3F10.09 |||1-|Schizosaccharomyces pombe|chr 1|||Manual
Length = 264
Score = 27.1 bits (57), Expect = 2.8
Identities = 10/22 (45%), Positives = 16/22 (72%)
Frame = -1
Query: 160 RYIVDINCQRPNNAQMWFCALN 95
R +VD++C+R +N WF A+N
Sbjct: 133 RLVVDVSCRRKDN--RWFAAIN 152
>SPAC1D4.10 |||tRNA endonuclease|Schizosaccharomyces pombe|chr
1|||Manual
Length = 809
Score = 27.1 bits (57), Expect = 2.8
Identities = 11/21 (52%), Positives = 15/21 (71%)
Frame = -2
Query: 381 PAPPLPRRPDVFISLTIQSVP 319
PAP P +P++FIS +QS P
Sbjct: 255 PAPLEPDKPELFISYIVQSHP 275
>SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, with EF
hand and WH2 motif |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1794
Score = 26.6 bits (56), Expect = 3.7
Identities = 9/19 (47%), Positives = 13/19 (68%)
Frame = -1
Query: 295 IPVPSGESTLQPPFMSTIQ 239
+P P+ TL PP +ST+Q
Sbjct: 1181 VPAPAAPQTLNPPSVSTVQ 1199
>SPCC417.06c |ppk35|mug27|serine/threonine protein kinase
Ppk35|Schizosaccharomyces pombe|chr 3|||Manual
Length = 624
Score = 26.6 bits (56), Expect = 3.7
Identities = 9/28 (32%), Positives = 14/28 (50%)
Frame = +1
Query: 124 YWAFGN*CQQCTGALPADPGAFKRQVWT 207
YW+ G C +C P G+ ++ WT
Sbjct: 380 YWSLGCICYECLVGYPPFSGSTLQETWT 407
>SPBC244.02c |||U3 snoRNP-associated protein Utp6
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 488
Score = 26.2 bits (55), Expect = 4.8
Identities = 8/24 (33%), Positives = 15/24 (62%)
Frame = -1
Query: 136 QRPNNAQMWFCALNHSCQCTSHIS 65
+ PNNA++W A +H +++S
Sbjct: 136 KHPNNAELWVVACDHEFSINANVS 159
>SPCC4G3.19 |alp16||gamma tubulin complex subunit Alp16
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 759
Score = 25.4 bits (53), Expect = 8.5
Identities = 10/25 (40%), Positives = 15/25 (60%)
Frame = -3
Query: 77 QPYFLLKKFHTDFAFSQIKFNDNSV 3
Q + LL FH+ F F +F+DN +
Sbjct: 523 QVFDLLNFFHSTFLFQNYEFSDNVI 547
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,331,446
Number of Sequences: 5004
Number of extensions: 74546
Number of successful extensions: 225
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 211
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 224
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 347244562
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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