Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P16_F_J06
(736 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
07_03_1481 + 26860051-26860104,26861114-26861143,26861714-26863174 305 2e-83
06_03_1253 + 28761311-28761598,28761689-28761882,28762327-28762711 33 0.18
07_03_0684 + 20675947-20676157,20676236-20676336,20676428-206766... 31 1.3
02_05_1191 + 34856635-34856775,34856878-34856942,34857096-348571... 31 1.3
01_07_0345 + 42877363-42878367 29 3.8
03_06_0417 - 33782577-33782687,33782996-33783052,33783110-337832... 28 6.7
10_01_0163 - 1850018-1850033,1850184-1850271,1850824-1854544 28 8.8
07_03_0754 - 21256860-21257702 28 8.8
05_07_0014 - 27046329-27046371,27059170-27060017,27060739-27061563 28 8.8
04_04_1064 - 30516378-30516735,30516852-30517051,30517148-30517411 28 8.8
>07_03_1481 + 26860051-26860104,26861114-26861143,26861714-26863174
Length = 514
Score = 305 bits (750), Expect = 2e-83
Identities = 136/184 (73%), Positives = 153/184 (83%)
Frame = +2
Query: 185 PSKDKYGPLADSDRVFTNLYGRHEWRLKGALARGDWYLTKEILLKGTDWIVNEMKTSGLR 364
P K +G L D DR+FTNLYG+H+ LKGA+ RGDW+ TK+++LKG DWIVNEMK SGLR
Sbjct: 78 PEKTHFGDLKDEDRIFTNLYGQHDPFLKGAMKRGDWHRTKDLVLKGADWIVNEMKKSGLR 137
Query: 365 GRGGAGFPTGMKWSFMNKPSDGRPKYLVVNADEGEPGTCKDREIMRHDPHKLVEGCLIAG 544
GRGGAGFP+G+KWSFM K SDGRP YLVVNADE EPGTCKDREIMRHDPHKL+EGCLIAG
Sbjct: 138 GRGGAGFPSGLKWSFMPKVSDGRPSYLVVNADESEPGTCKDREIMRHDPHKLLEGCLIAG 197
Query: 545 RAMGAQAAYIYIRGEFYNEASNLQVAIAEAYQAGLIGKNSCGSGYDFDIFVHRGAGAYIC 724
M A AAYIYIRGE+ NE NL A EAY AGL+GKN+CGSGYDFD+ +H GAGAYIC
Sbjct: 198 VGMRASAAYIYIRGEYVNERLNLLKAREEAYAAGLLGKNACGSGYDFDVHIHFGAGAYIC 257
Query: 725 GEXT 736
GE T
Sbjct: 258 GEET 261
>06_03_1253 + 28761311-28761598,28761689-28761882,28762327-28762711
Length = 288
Score = 33.5 bits (73), Expect = 0.18
Identities = 16/50 (32%), Positives = 28/50 (56%), Gaps = 1/50 (2%)
Frame = +2
Query: 146 VNNVPVR-FQQTQAPSKDKYGPLADSDRVFTNLYGRHEWRLKGALARGDW 292
V+ P+R ++ T+A + + P A + RV+ +L+ EW +G R DW
Sbjct: 164 VDGTPIREYRNTEATTGVAF-PRAQAMRVYASLWDAEEWATQGGRVRTDW 212
>07_03_0684 +
20675947-20676157,20676236-20676336,20676428-20676630,
20677024-20677438
Length = 309
Score = 30.7 bits (66), Expect = 1.3
Identities = 12/49 (24%), Positives = 26/49 (53%)
Frame = +2
Query: 146 VNNVPVRFQQTQAPSKDKYGPLADSDRVFTNLYGRHEWRLKGALARGDW 292
V+ VP+R + + + + P+ VF++++ +W +G L + DW
Sbjct: 175 VDKVPIR-EYRNSDKPNTFFPIMKPMYVFSSIWNADDWATRGGLEKTDW 222
>02_05_1191 +
34856635-34856775,34856878-34856942,34857096-34857165,
34857499-34857570,34857668-34857871,34858793-34858866,
34858965-34859048,34859582-34859669,34859763-34859844,
34860178-34860251,34860474-34860581,34860683-34860747,
34861317-34861430,34861644-34861743,34861840-34861893,
34861972-34862067
Length = 496
Score = 30.7 bits (66), Expect = 1.3
Identities = 24/68 (35%), Positives = 34/68 (50%)
Frame = +2
Query: 266 KGALARGDWYLTKEILLKGTDWIVNEMKTSGLRGRGGAGFPTGMKWSFMNKPSDGRPKYL 445
KG A D + KE+ L+G D + + S L GRG P G S ++K +DG +
Sbjct: 220 KGMGAHVDLFYRKELPLRGFDDEMRTVVASNLEGRGIRLHP-GTNLSELSKTADG----I 274
Query: 446 VVNADEGE 469
V D+GE
Sbjct: 275 KVVTDKGE 282
>01_07_0345 + 42877363-42878367
Length = 334
Score = 29.1 bits (62), Expect = 3.8
Identities = 12/39 (30%), Positives = 19/39 (48%)
Frame = +2
Query: 332 IVNEMKTSGLRGRGGAGFPTGMKWSFMNKPSDGRPKYLV 448
+ +M G G GG+G PT + WS S R + ++
Sbjct: 236 LYTQMDDGGFNGGGGSGSPTMIGWSSRGSRSSQRQRSII 274
>03_06_0417 -
33782577-33782687,33782996-33783052,33783110-33783205,
33783252-33783284,33783543-33783599,33783968-33784060,
33784308-33784395,33784812-33784835,33784956-33785164
Length = 255
Score = 28.3 bits (60), Expect = 6.7
Identities = 11/23 (47%), Positives = 15/23 (65%)
Frame = -2
Query: 375 PPLPRRPDVFISLTIQSVPFSKI 307
PP P+ P VF +TI S+P +I
Sbjct: 31 PPNPKNPVVFFDVTIGSIPAGRI 53
>10_01_0163 - 1850018-1850033,1850184-1850271,1850824-1854544
Length = 1274
Score = 27.9 bits (59), Expect = 8.8
Identities = 16/43 (37%), Positives = 23/43 (53%), Gaps = 4/43 (9%)
Frame = -3
Query: 302 SSNTSPLGREHPSTSIHVDHTSL*KPDRY----RPAVHTCLLK 186
SSN L REHP + + +TS+ PD + PA+ T L +
Sbjct: 520 SSNLKNLMREHPLYHVLIPYTSIALPDDFMGNEAPALRTLLFR 562
>07_03_0754 - 21256860-21257702
Length = 280
Score = 27.9 bits (59), Expect = 8.8
Identities = 12/20 (60%), Positives = 14/20 (70%)
Frame = -3
Query: 317 SVKSPSSNTSPLGREHPSTS 258
S+ PSS + PLGR HPS S
Sbjct: 77 SLSRPSSLSDPLGRFHPSAS 96
>05_07_0014 - 27046329-27046371,27059170-27060017,27060739-27061563
Length = 571
Score = 27.9 bits (59), Expect = 8.8
Identities = 12/31 (38%), Positives = 16/31 (51%)
Frame = -1
Query: 499 HNLSVFTSTRFTLISINHEIFWTTIRRLVHE 407
H FT R TL ++ WT +RRL H+
Sbjct: 60 HGAGHFTVARPTLQIAYQDLSWTALRRLAHD 90
>04_04_1064 - 30516378-30516735,30516852-30517051,30517148-30517411
Length = 273
Score = 27.9 bits (59), Expect = 8.8
Identities = 12/53 (22%), Positives = 25/53 (47%)
Frame = +2
Query: 134 LAINVNNVPVRFQQTQAPSKDKYGPLADSDRVFTNLYGRHEWRLKGALARGDW 292
+ + V+ P+R + A Y P + R++ +L+ +W +G + DW
Sbjct: 154 ILVLVDGTPIREMKNHADKGIAY-PSSQRMRLYGSLWNADDWATQGGRVKTDW 205
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,918,574
Number of Sequences: 37544
Number of extensions: 553792
Number of successful extensions: 1442
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1384
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1442
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1933531792
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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