Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P16_F_J06
(736 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z50109-8|CAA90435.1| 479|Caenorhabditis elegans Hypothetical pr... 330 5e-91
Z67754-2|CAA91752.2| 677|Caenorhabditis elegans Hypothetical pr... 31 0.85
U41531-7|AAA83161.2| 415|Caenorhabditis elegans Feminizing gene... 29 3.4
U14946-1|AAA67723.1| 415|Caenorhabditis elegans ribonucleoprote... 29 3.4
Z81466-2|CAC42256.1| 954|Caenorhabditis elegans Hypothetical pr... 29 4.5
Z81466-1|CAB03869.1| 982|Caenorhabditis elegans Hypothetical pr... 29 4.5
Z78064-10|CAB01510.3| 299|Caenorhabditis elegans Hypothetical p... 29 4.5
AJ133374-1|CAB40208.1| 954|Caenorhabditis elegans lin-10 protei... 29 4.5
U37430-2|AAL08045.2| 802|Caenorhabditis elegans Hypothetical pr... 28 7.9
>Z50109-8|CAA90435.1| 479|Caenorhabditis elegans Hypothetical
protein C09H10.3 protein.
Length = 479
Score = 330 bits (812), Expect = 5e-91
Identities = 145/182 (79%), Positives = 164/182 (90%)
Frame = +2
Query: 191 KDKYGPLADSDRVFTNLYGRHEWRLKGALARGDWYLTKEILLKGTDWIVNEMKTSGLRGR 370
K +G L DSDR+FTNLYGRH++RLKGA+ARGDW+ TKEI+LKG+DWI+ E+KTSGLRGR
Sbjct: 40 KTSFGNLKDSDRIFTNLYGRHDYRLKGAMARGDWHKTKEIILKGSDWILGELKTSGLRGR 99
Query: 371 GGAGFPTGMKWSFMNKPSDGRPKYLVVNADEGEPGTCKDREIMRHDPHKLVEGCLIAGRA 550
GGAGFP+GMKW FMNKP DGRPKYLVVNADEGEPGTCKDREIMRHDPHKL+EGCLI G A
Sbjct: 100 GGAGFPSGMKWGFMNKPFDGRPKYLVVNADEGEPGTCKDREIMRHDPHKLIEGCLIGGVA 159
Query: 551 MGAQAAYIYIRGEFYNEASNLQVAIAEAYQAGLIGKNSCGSGYDFDIFVHRGAGAYICGE 730
MGA+AAYIYIRGEFYNEA LQ AI EAY+AG +GK+ G+GY+FD+FVHRGAGAYICGE
Sbjct: 160 MGARAAYIYIRGEFYNEACILQEAINEAYKAGYLGKDCLGTGYNFDVFVHRGAGAYICGE 219
Query: 731 XT 736
T
Sbjct: 220 ET 221
>Z67754-2|CAA91752.2| 677|Caenorhabditis elegans Hypothetical
protein C34E11.2 protein.
Length = 677
Score = 31.1 bits (67), Expect = 0.85
Identities = 13/31 (41%), Positives = 19/31 (61%)
Frame = -2
Query: 396 IPVGKPAPPLPRRPDVFISLTIQSVPFSKIS 304
IP+ P PPLPR P L S+P+++I+
Sbjct: 492 IPMSSPPPPLPRTPQPNNGLPNASLPYNQIN 522
>U41531-7|AAA83161.2| 415|Caenorhabditis elegans Feminizing gene on
x protein 1 protein.
Length = 415
Score = 29.1 bits (62), Expect = 3.4
Identities = 17/61 (27%), Positives = 33/61 (54%), Gaps = 1/61 (1%)
Frame = +2
Query: 53 TFSARNMAGALTRVIQGTKPHLGIIGPLAINVNNVPVRFQQTQAPSK-DKYGPLADSDRV 229
T + N + A+T+ T G GP ++V+N+P RF+ + +K+G ++D + +
Sbjct: 128 TAGSTNGSAAVTQPDPSTSS--GPDGPKRLHVSNIPFRFRDPDLKTMFEKFGVVSDVEII 185
Query: 230 F 232
F
Sbjct: 186 F 186
>U14946-1|AAA67723.1| 415|Caenorhabditis elegans ribonucleoprotein
protein.
Length = 415
Score = 29.1 bits (62), Expect = 3.4
Identities = 17/61 (27%), Positives = 33/61 (54%), Gaps = 1/61 (1%)
Frame = +2
Query: 53 TFSARNMAGALTRVIQGTKPHLGIIGPLAINVNNVPVRFQQTQAPSK-DKYGPLADSDRV 229
T + N + A+T+ T G GP ++V+N+P RF+ + +K+G ++D + +
Sbjct: 128 TAGSTNGSAAVTQPDPSTSS--GPDGPKRLHVSNIPFRFRDPDLKTMFEKFGVVSDVEII 185
Query: 230 F 232
F
Sbjct: 186 F 186
>Z81466-2|CAC42256.1| 954|Caenorhabditis elegans Hypothetical
protein C09H6.2b protein.
Length = 954
Score = 28.7 bits (61), Expect = 4.5
Identities = 15/47 (31%), Positives = 22/47 (46%)
Frame = +2
Query: 488 REIMRHDPHKLVEGCLIAGRAMGAQAAYIYIRGEFYNEASNLQVAIA 628
+E M H+P L+EG L R +G+ RG + Q A+A
Sbjct: 563 KETMVHEPAVLIEGVLFRARYLGSTQMLCESRGSKAARMAQAQEAVA 609
>Z81466-1|CAB03869.1| 982|Caenorhabditis elegans Hypothetical
protein C09H6.2a protein.
Length = 982
Score = 28.7 bits (61), Expect = 4.5
Identities = 15/47 (31%), Positives = 22/47 (46%)
Frame = +2
Query: 488 REIMRHDPHKLVEGCLIAGRAMGAQAAYIYIRGEFYNEASNLQVAIA 628
+E M H+P L+EG L R +G+ RG + Q A+A
Sbjct: 591 KETMVHEPAVLIEGVLFRARYLGSTQMLCESRGSKAARMAQAQEAVA 637
>Z78064-10|CAB01510.3| 299|Caenorhabditis elegans Hypothetical
protein F57B1.1 protein.
Length = 299
Score = 28.7 bits (61), Expect = 4.5
Identities = 10/32 (31%), Positives = 18/32 (56%)
Frame = -3
Query: 122 CPNVVLCPESLLSVHQPYFLLKKFHTDFAFSQ 27
C N +L ++++H+ + K HTD AF +
Sbjct: 80 CHNAILFSNLIIAIHRMFVFFFKKHTDIAFEK 111
>AJ133374-1|CAB40208.1| 954|Caenorhabditis elegans lin-10 protein
protein.
Length = 954
Score = 28.7 bits (61), Expect = 4.5
Identities = 15/47 (31%), Positives = 22/47 (46%)
Frame = +2
Query: 488 REIMRHDPHKLVEGCLIAGRAMGAQAAYIYIRGEFYNEASNLQVAIA 628
+E M H+P L+EG L R +G+ RG + Q A+A
Sbjct: 563 KETMVHEPAVLIEGVLFRARYLGSTQMLCESRGSKAARMAQAQEAVA 609
>U37430-2|AAL08045.2| 802|Caenorhabditis elegans Hypothetical
protein K09F5.6 protein.
Length = 802
Score = 27.9 bits (59), Expect = 7.9
Identities = 14/50 (28%), Positives = 23/50 (46%)
Frame = +2
Query: 338 NEMKTSGLRGRGGAGFPTGMKWSFMNKPSDGRPKYLVVNADEGEPGTCKD 487
+E K SG+ G G G ++W + + G+P L+ N G K+
Sbjct: 751 SENKGSGIYGTSGIGSGNNVQWGGAQRAAPGQPGQLLWNPPGATNGHNKE 800
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,806,330
Number of Sequences: 27780
Number of extensions: 447653
Number of successful extensions: 1266
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 1188
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1263
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1724918872
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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