Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P16_F_J06
(736 letters)
Database: bee
438 sequences; 146,343 total letters
Searching......................................................done
Score E
Sequences producing significant alignments: (bits) Value
DQ667186-1|ABG75738.1| 447|Apis mellifera glutamate-gated chlor... 24 1.3
DQ667185-1|ABG75737.1| 447|Apis mellifera glutamate-gated chlor... 24 1.3
EF127805-1|ABL67942.1| 461|Apis mellifera nicotinic acetylcholi... 23 3.9
EF127804-1|ABL67941.1| 461|Apis mellifera nicotinic acetylcholi... 23 3.9
EF127803-1|ABL67940.1| 461|Apis mellifera nicotinic acetylcholi... 23 3.9
EF127802-1|ABL67939.1| 461|Apis mellifera nicotinic acetylcholi... 23 3.9
EF127801-1|ABL67938.1| 461|Apis mellifera nicotinic acetylcholi... 23 3.9
DQ325090-1|ABD14104.1| 178|Apis mellifera complementary sex det... 22 5.2
AY569705-1|AAS86658.1| 419|Apis mellifera complementary sex det... 22 5.2
AJ849455-1|CAH60991.1| 366|Apis mellifera twist protein protein. 22 5.2
DQ257416-1|ABB81847.1| 552|Apis mellifera yellow-h protein. 21 9.1
>DQ667186-1|ABG75738.1| 447|Apis mellifera glutamate-gated chloride
channel protein.
Length = 447
Score = 24.2 bits (50), Expect = 1.3
Identities = 10/27 (37%), Positives = 16/27 (59%)
Frame = -3
Query: 86 SVHQPYFLLKKFHTDFAFSQIKFNDNS 6
++H P F L+KF TD+ S+ + S
Sbjct: 203 NLHLPRFTLEKFFTDYCNSKTNTGEYS 229
>DQ667185-1|ABG75737.1| 447|Apis mellifera glutamate-gated chloride
channel protein.
Length = 447
Score = 24.2 bits (50), Expect = 1.3
Identities = 10/27 (37%), Positives = 16/27 (59%)
Frame = -3
Query: 86 SVHQPYFLLKKFHTDFAFSQIKFNDNS 6
++H P F L+KF TD+ S+ + S
Sbjct: 203 NLHLPRFTLEKFFTDYCNSKTNTGEYS 229
>EF127805-1|ABL67942.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 6 protein.
Length = 461
Score = 22.6 bits (46), Expect = 3.9
Identities = 11/27 (40%), Positives = 16/27 (59%), Gaps = 1/27 (3%)
Frame = +2
Query: 431 RPKYLVVN-ADEGEPGTCKDREIMRHD 508
+P L+ N ADEG GT + ++ HD
Sbjct: 70 KPDILMYNSADEGFDGTYQTSVVVTHD 96
>EF127804-1|ABL67941.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 5 protein.
Length = 461
Score = 22.6 bits (46), Expect = 3.9
Identities = 11/27 (40%), Positives = 16/27 (59%), Gaps = 1/27 (3%)
Frame = +2
Query: 431 RPKYLVVN-ADEGEPGTCKDREIMRHD 508
+P L+ N ADEG GT + ++ HD
Sbjct: 70 KPDILMYNSADEGFDGTYQTSVVVTHD 96
>EF127803-1|ABL67940.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 4 protein.
Length = 461
Score = 22.6 bits (46), Expect = 3.9
Identities = 11/27 (40%), Positives = 16/27 (59%), Gaps = 1/27 (3%)
Frame = +2
Query: 431 RPKYLVVN-ADEGEPGTCKDREIMRHD 508
+P L+ N ADEG GT + ++ HD
Sbjct: 70 KPDILMYNSADEGFDGTYQTSVVVTHD 96
>EF127802-1|ABL67939.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 3 protein.
Length = 461
Score = 22.6 bits (46), Expect = 3.9
Identities = 11/27 (40%), Positives = 16/27 (59%), Gaps = 1/27 (3%)
Frame = +2
Query: 431 RPKYLVVN-ADEGEPGTCKDREIMRHD 508
+P L+ N ADEG GT + ++ HD
Sbjct: 70 KPDILMYNSADEGFDGTYQTSVVVTHD 96
>EF127801-1|ABL67938.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 2 protein.
Length = 461
Score = 22.6 bits (46), Expect = 3.9
Identities = 11/27 (40%), Positives = 16/27 (59%), Gaps = 1/27 (3%)
Frame = +2
Query: 431 RPKYLVVN-ADEGEPGTCKDREIMRHD 508
+P L+ N ADEG GT + ++ HD
Sbjct: 70 KPDILMYNSADEGFDGTYQTSVVVTHD 96
>DQ325090-1|ABD14104.1| 178|Apis mellifera complementary sex
determiner protein.
Length = 178
Score = 22.2 bits (45), Expect = 5.2
Identities = 15/54 (27%), Positives = 22/54 (40%)
Frame = +2
Query: 47 CETFSARNMAGALTRVIQGTKPHLGIIGPLAINVNNVPVRFQQTQAPSKDKYGP 208
C F R M ++ IQ P IGPL +P + + P ++GP
Sbjct: 124 CGNFPPRPMGPWIS--IQEQIPRFRHIGPLTPFPRFIPPNAYRFRPPLNPRFGP 175
>AY569705-1|AAS86658.1| 419|Apis mellifera complementary sex
determiner protein.
Length = 419
Score = 22.2 bits (45), Expect = 5.2
Identities = 15/54 (27%), Positives = 22/54 (40%)
Frame = +2
Query: 47 CETFSARNMAGALTRVIQGTKPHLGIIGPLAINVNNVPVRFQQTQAPSKDKYGP 208
C F R M ++ IQ P IGPL +P + + P ++GP
Sbjct: 365 CGNFPPRPMGPWIS--IQEQIPRFRHIGPLTPFPRFIPPNAYRFRPPLNPRFGP 416
>AJ849455-1|CAH60991.1| 366|Apis mellifera twist protein protein.
Length = 366
Score = 22.2 bits (45), Expect = 5.2
Identities = 8/14 (57%), Positives = 10/14 (71%)
Frame = -3
Query: 707 HRGVRIYQSHNQNH 666
HR + IYQSH+ H
Sbjct: 64 HRDLPIYQSHHHLH 77
>DQ257416-1|ABB81847.1| 552|Apis mellifera yellow-h protein.
Length = 552
Score = 21.4 bits (43), Expect = 9.1
Identities = 8/26 (30%), Positives = 14/26 (53%)
Frame = -2
Query: 456 ALTTRYFGRPSEGLFMNDHFIPVGKP 379
A++T G D+F+P+G+P
Sbjct: 403 AVSTSILGDKKTAEENTDYFMPIGRP 428
Database: bee
Posted date: Oct 23, 2007 1:17 PM
Number of letters in database: 146,343
Number of sequences in database: 438
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 224,904
Number of Sequences: 438
Number of extensions: 5196
Number of successful extensions: 14
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 14
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 14
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 22901220
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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