Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P16_F_J04
         (755 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC970.01 |rad16|rad10, rad20, swi9|DNA repair endonuclease XPF...    31   0.18 
SPAC29E6.06c ||SPAC30.10c|cysteine-tRNA ligase |Schizosaccharomy...    30   0.41 
SPCC364.06 |nap1||nucleosome assembly protein Nap1 |Schizosaccha...    28   1.3  
SPAPB15E9.01c ||SPAPB18E9.06c|sequence orphan|Schizosaccharomyce...    27   2.9  
SPAC13F5.04c |||endosomal sorting protein |Schizosaccharomyces p...    26   5.0  
SPAC20G8.10c ||SPAC3A12.01c|beclin family protein|Schizosaccharo...    26   5.0  
SPAC20G4.01 ||SPAC22F8.13|CCR4-Not complex subunit Caf16|Schizos...    25   8.8  
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1...    25   8.8  

>SPCC970.01 |rad16|rad10, rad20, swi9|DNA repair endonuclease
           XPF|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 892

 Score = 31.1 bits (67), Expect = 0.18
 Identities = 21/48 (43%), Positives = 29/48 (60%), Gaps = 1/48 (2%)
 Frame = -1

Query: 374 NQRAGFHEGTFDVSIARRELTSTW*RQSARSRR-VDDICTLTRLLIAL 234
           N  +  H  +FDV I RR+L S W R S ++++ V D+ TL  LL AL
Sbjct: 247 NIESALHR-SFDV-IVRRQLDSVWHRVSPKTKQLVGDLSTLKFLLSAL 292


>SPAC29E6.06c ||SPAC30.10c|cysteine-tRNA ligase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 754

 Score = 29.9 bits (64), Expect = 0.41
 Identities = 14/63 (22%), Positives = 33/63 (52%)
 Frame = +3

Query: 360 SRALIHTPVIAFRTVSGIMCEVASWIPDAVAVTLRDASSVQPVLAWLSALRASTEDYDQL 539
           ++A I+   +  +  S ++ ++ASWI   + +   D +     + W S+  +S+E+ D +
Sbjct: 529 TQANIYIREVGQQPCSRLLGQIASWITSMLQIFGLDENGHPNAVGWSSSKGSSSENTDAM 588

Query: 540 PVV 548
           P +
Sbjct: 589 PYI 591


>SPCC364.06 |nap1||nucleosome assembly protein Nap1
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 393

 Score = 28.3 bits (60), Expect = 1.3
 Identities = 15/55 (27%), Positives = 25/55 (45%)
 Frame = +3

Query: 501 SALRASTEDYDQLPVVVPAEESSRASPDSAFDEILSQLGKEIFKLEEYHQNLLPP 665
           S L  ++E   +LP  V    S        + ++ SQ  KE+F+LE+ +     P
Sbjct: 59  SLLHLTSEGVSELPEAVQRRISGLRGLQKRYSDLESQFQKELFELEKAYAKKYAP 113


>SPAPB15E9.01c ||SPAPB18E9.06c|sequence orphan|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1036

 Score = 27.1 bits (57), Expect = 2.9
 Identities = 22/86 (25%), Positives = 36/86 (41%)
 Frame = -2

Query: 640 SSSLKISFPSCESISSKALSGEARDDXXXXXXXXXXXXXSVEARKADSQARTGCTELASR 461
           SSSL  S  +  S +S +L+  + +              +  +  A S +    +  ++ 
Sbjct: 178 SSSLS-STAASNSATSSSLASSSLNSTTSATATSSSLSSTAASNSATSSSLASSSLNSTT 236

Query: 460 SVTATASGIQLATSHMIPLTVRNAIT 383
           S TAT+S I    S   PLT  N+ T
Sbjct: 237 SATATSSSISSTVSSSTPLTSSNSTT 262


>SPAC13F5.04c |||endosomal sorting protein |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 277

 Score = 26.2 bits (55), Expect = 5.0
 Identities = 14/36 (38%), Positives = 19/36 (52%)
 Frame = +1

Query: 442 TRSRSHCATLAPCSRSSPGCQLCEPPPRITTNSPSL 549
           TRS SH  +L+P S+ +        P  ITT S S+
Sbjct: 156 TRSSSHIQSLSPESKQTSDGHRPPSPTSITTTSTSI 191


>SPAC20G8.10c ||SPAC3A12.01c|beclin family
           protein|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 464

 Score = 26.2 bits (55), Expect = 5.0
 Identities = 12/39 (30%), Positives = 21/39 (53%)
 Frame = +3

Query: 525 DYDQLPVVVPAEESSRASPDSAFDEILSQLGKEIFKLEE 641
           +YD         E + A+ DS  DE++ Q+ ++  K+EE
Sbjct: 170 NYDNFLSSQTVHEENTAALDSEIDELMKQINEKEEKIEE 208


>SPAC20G4.01 ||SPAC22F8.13|CCR4-Not complex subunit
           Caf16|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 280

 Score = 25.4 bits (53), Expect = 8.8
 Identities = 12/31 (38%), Positives = 17/31 (54%)
 Frame = +3

Query: 18  STGXASRADACLPLLKTTKKPRGKPSKSVRA 110
           STG ++  + CL  LK  KK RG   +  R+
Sbjct: 224 STGNSALLETCLEWLKEDKKNRGTREEEKRS 254


>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 574

 Score = 25.4 bits (53), Expect = 8.8
 Identities = 19/47 (40%), Positives = 23/47 (48%), Gaps = 6/47 (12%)
 Frame = +1

Query: 475 PCSRSSPGCQLCEPPPRITTNSP-SLFLP-KNR----PAPPRIAPST 597
           P    S    L  PPP   +N+  S+ LP + R    P PPR APST
Sbjct: 326 PIGNGSSNSSLPPPPPPPRSNAAGSIPLPPQGRSAPPPPPPRSAPST 372


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,726,522
Number of Sequences: 5004
Number of extensions: 49870
Number of successful extensions: 174
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 166
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 173
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 361294920
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)