Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P16_F_J04
(755 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
02_05_0932 - 32841331-32842242 32 0.43
04_04_0176 - 23329589-23331043 31 0.75
03_02_0316 - 7408003-7409340 31 1.3
06_03_0050 + 15980215-15981519 30 1.7
06_01_1113 - 9164953-9165044,9166453-9166586,9166624-9166734,916... 30 2.3
04_04_1204 - 31715270-31715466,31716121-31716326,31716665-31717044 30 2.3
04_01_0365 - 4796780-4796971,4797246-4797327,4797417-4797527,479... 29 4.0
04_04_0748 + 27738155-27740290 29 5.3
11_01_0415 + 3160281-3160502,3162002-3162109,3163328-3163480,316... 28 7.0
06_01_0672 - 4903126-4903219,4903322-4903430,4903620-4905096,490... 28 7.0
04_04_0951 + 29614196-29615275 28 7.0
04_03_0709 + 18902507-18902704,18902795-18905028,18905114-189053... 28 7.0
02_04_0180 + 20696258-20698398,20698691-20698871,20698998-20699060 28 7.0
06_02_0090 + 11604017-11604082,11604345-11604397,11604710-11605229 28 9.2
03_05_0218 + 22058304-22058795 28 9.2
03_01_0530 + 3971990-3972331,3972415-3972489,3972608-3972661,397... 28 9.2
01_01_1148 - 9113728-9113835,9113952-9114035,9114831-9114992,911... 28 9.2
>02_05_0932 - 32841331-32842242
Length = 303
Score = 32.3 bits (70), Expect = 0.43
Identities = 20/50 (40%), Positives = 25/50 (50%), Gaps = 3/50 (6%)
Frame = +1
Query: 439 RTRSRSHCATLAPCSRS--SPGCQLCEPPPRITTN-SPSLFLPKNRPAPP 579
R R S C L+P + S SP Q P R+ + PSL LP +P PP
Sbjct: 54 RRRRPSQCNNLSPSASSVRSPRLQKTPRPCRVRPDPQPSLLLPPPQPPPP 103
>04_04_0176 - 23329589-23331043
Length = 484
Score = 31.5 bits (68), Expect = 0.75
Identities = 13/29 (44%), Positives = 15/29 (51%)
Frame = +1
Query: 511 EPPPRITTNSPSLFLPKNRPAPPRIAPST 597
EPP P LP +PAPPR +P T
Sbjct: 95 EPPKPTPQQQPQPLLPAAKPAPPRASPPT 123
>03_02_0316 - 7408003-7409340
Length = 445
Score = 30.7 bits (66), Expect = 1.3
Identities = 15/42 (35%), Positives = 22/42 (52%)
Frame = -3
Query: 222 ITNDGRISDLYDDNVDIFADCLIILIIEYXXXXKTQSAHVRT 97
++ DG DL DD VD D L+++I T++A V T
Sbjct: 243 VSRDGAFVDLADDKVDKVVDALVVIIKAPICPQATKAAMVAT 284
>06_03_0050 + 15980215-15981519
Length = 434
Score = 30.3 bits (65), Expect = 1.7
Identities = 15/46 (32%), Positives = 27/46 (58%)
Frame = +3
Query: 381 PVIAFRTVSGIMCEVASWIPDAVAVTLRDASSVQPVLAWLSALRAS 518
P++ F V+ ++ VA+W+ A + RDA++++ V A L L S
Sbjct: 6 PLLRFFIVAVLLSSVAAWVAAATTLHERDAAALRDVRAGLRDLPGS 51
>06_01_1113 -
9164953-9165044,9166453-9166586,9166624-9166734,
9166815-9167066,9167152-9168186,9168313-9169187,
9169476-9169673
Length = 898
Score = 29.9 bits (64), Expect = 2.3
Identities = 21/51 (41%), Positives = 24/51 (47%), Gaps = 1/51 (1%)
Frame = +1
Query: 430 VGFRTRSRSHCATLAPCSRSSPGCQLCEPP-PRITTNSPSLFLPKNRPAPP 579
VG T S S T A + SP EPP PR + PSL P +P PP
Sbjct: 444 VGSSTPSSSQARTAAAPAPPSPP----EPPSPRDPASPPSLRSPPRQPTPP 490
>04_04_1204 - 31715270-31715466,31716121-31716326,31716665-31717044
Length = 260
Score = 29.9 bits (64), Expect = 2.3
Identities = 14/36 (38%), Positives = 22/36 (61%)
Frame = -1
Query: 422 LTHDSAHRSKRDNRCMNQRAGFHEGTFDVSIARREL 315
++HD AHR+ RD ++Q F + TFD+ + EL
Sbjct: 213 VSHDDAHRAMRDVMILSQ--VFQKMTFDLKLTNEEL 246
>04_01_0365 -
4796780-4796971,4797246-4797327,4797417-4797527,
4797608-4797859,4797945-4800115
Length = 935
Score = 29.1 bits (62), Expect = 4.0
Identities = 22/57 (38%), Positives = 25/57 (43%), Gaps = 1/57 (1%)
Frame = +1
Query: 412 SCVRLQVGFRTRSRSHCATLAPCSRSSPGCQLCEPP-PRITTNSPSLFLPKNRPAPP 579
S L VG T S S T A + SP EPP PR + P L P +P PP
Sbjct: 459 SAAVLAVGSSTPSSSQAMTAAAPAPPSPP----EPPSPRHPPSPPPLRSPPRQPTPP 511
>04_04_0748 + 27738155-27740290
Length = 711
Score = 28.7 bits (61), Expect = 5.3
Identities = 14/31 (45%), Positives = 20/31 (64%), Gaps = 1/31 (3%)
Frame = +1
Query: 505 LCEPPPRITTNSP-SLFLPKNRPAPPRIAPS 594
L +PPP+ + P +LFL N+P PP AP+
Sbjct: 281 LLQPPPKRHHSVPDNLFLLHNQPQPPPPAPA 311
>11_01_0415 +
3160281-3160502,3162002-3162109,3163328-3163480,
3163568-3163919,3175051-3175607
Length = 463
Score = 28.3 bits (60), Expect = 7.0
Identities = 13/32 (40%), Positives = 21/32 (65%), Gaps = 1/32 (3%)
Frame = -2
Query: 685 RETSFSGGGRRF*WY-SSSLKISFPSCESISS 593
++T G G + W SS+++++FPS ESI S
Sbjct: 7 KKTGGDGSGAAYTWVLSSTVRLNFPSIESIRS 38
>06_01_0672 -
4903126-4903219,4903322-4903430,4903620-4905096,
4906200-4906538
Length = 672
Score = 28.3 bits (60), Expect = 7.0
Identities = 18/52 (34%), Positives = 25/52 (48%)
Frame = +1
Query: 442 TRSRSHCATLAPCSRSSPGCQLCEPPPRITTNSPSLFLPKNRPAPPRIAPST 597
+RSRS A R SP + PPPR + + + PK +P P A +T
Sbjct: 211 SRSRSSLKESASSVRDSP--RRAPPPPRRSHDGDAGDRPKQQPEPVHAATTT 260
>04_04_0951 + 29614196-29615275
Length = 359
Score = 28.3 bits (60), Expect = 7.0
Identities = 14/45 (31%), Positives = 19/45 (42%)
Frame = +1
Query: 445 RSRSHCATLAPCSRSSPGCQLCEPPPRITTNSPSLFLPKNRPAPP 579
R H A + R++P C LC + S S L +P PP
Sbjct: 148 RHAFHAACVDAWLRTTPSCPLCRATVTLPHPSISAILAAEQPPPP 192
>04_03_0709 +
18902507-18902704,18902795-18905028,18905114-18905365,
18905446-18905556,18905646-18905727,18906002-18906193
Length = 1022
Score = 28.3 bits (60), Expect = 7.0
Identities = 21/57 (36%), Positives = 24/57 (42%), Gaps = 1/57 (1%)
Frame = +1
Query: 412 SCVRLQVGFRTRSRSHCATLAPCSRSSPGCQLCEPP-PRITTNSPSLFLPKNRPAPP 579
S L G T S S T A + SP EPP PR + P L P +P PP
Sbjct: 546 SAAVLAAGSSTPSSSQAMTAAALAPPSPP----EPPSPRHPPSPPPLRSPPRQPTPP 598
>02_04_0180 + 20696258-20698398,20698691-20698871,20698998-20699060
Length = 794
Score = 28.3 bits (60), Expect = 7.0
Identities = 13/26 (50%), Positives = 15/26 (57%)
Frame = +2
Query: 617 KRNLQARGVPSKPPPTAREGGLPXHP 694
+R + A G PS PPP A G P HP
Sbjct: 78 QRGVGAWGAPSPPPPPAAAGAAP-HP 102
>06_02_0090 + 11604017-11604082,11604345-11604397,11604710-11605229
Length = 212
Score = 27.9 bits (59), Expect = 9.2
Identities = 16/38 (42%), Positives = 20/38 (52%), Gaps = 4/38 (10%)
Frame = +1
Query: 481 SRSSPGCQLCEPPP----RITTNSPSLFLPKNRPAPPR 582
S SPG +L +PPP R+ + S F RP PPR
Sbjct: 163 SPGSPGRRLAQPPPRPGGRLAQAAASPFRCLYRPPPPR 200
>03_05_0218 + 22058304-22058795
Length = 163
Score = 27.9 bits (59), Expect = 9.2
Identities = 18/57 (31%), Positives = 24/57 (42%), Gaps = 6/57 (10%)
Frame = +1
Query: 445 RSRSHCATLAPCSRSS------PGCQLCEPPPRITTNSPSLFLPKNRPAPPRIAPST 597
R R +T P +RSS P + EPPP SP++ P A +A T
Sbjct: 73 RGRGSASTALPTTRSSVAVAEPPAVAVAEPPPVTVVQSPAVTEPSPPTAVVAVAEPT 129
>03_01_0530 +
3971990-3972331,3972415-3972489,3972608-3972661,
3972747-3972825,3972927-3973054,3973178-3973261,
3973344-3973427,3973518-3973669,3973810-3973960,
3974675-3974746,3975708-3975749
Length = 420
Score = 27.9 bits (59), Expect = 9.2
Identities = 13/36 (36%), Positives = 21/36 (58%)
Frame = -1
Query: 497 PGEDRLHGASVAQCDRDRVRNPTCNLTHDSAHRSKR 390
P D + G SV Q +D+V++ T L+H S + +R
Sbjct: 209 PSPDDVEGPSVLQLSKDKVKDQTYFLSHLSQTQLRR 244
>01_01_1148 -
9113728-9113835,9113952-9114035,9114831-9114992,
9115120-9115224,9115584-9116216,9117412-9117496,
9118426-9118520,9119083-9119241,9119968-9119997,
9120100-9120306
Length = 555
Score = 27.9 bits (59), Expect = 9.2
Identities = 13/25 (52%), Positives = 17/25 (68%)
Frame = +2
Query: 611 TRKRNLQARGVPSKPPPTAREGGLP 685
TR L A+ VP+ PPP A +GG+P
Sbjct: 331 TRSGILTAKKVPAPPPP-ANDGGVP 354
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,502,641
Number of Sequences: 37544
Number of extensions: 396896
Number of successful extensions: 1685
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 1570
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1679
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 2016060588
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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