Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P16_F_J04
         (755 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z74031-3|CAA98455.1|  245|Caenorhabditis elegans Hypothetical pr...    30   2.0  
U53154-2|AAC25856.1|  358|Caenorhabditis elegans Hypothetical pr...    29   3.6  
AL033514-11|CAA22083.2|  298|Caenorhabditis elegans Hypothetical...    29   4.7  
U61953-3|AAC48071.3|  491|Caenorhabditis elegans Hypothetical pr...    28   6.2  
Z77655-1|CAB01137.1|  393|Caenorhabditis elegans Hypothetical pr...    28   8.2  
U50191-2|AAK31556.2|  335|Caenorhabditis elegans Dumpy : shorter...    28   8.2  
U50191-1|AAO38600.2|  372|Caenorhabditis elegans Dumpy : shorter...    28   8.2  
L12692-1|AAA17395.2|  356|Caenorhabditis elegans collagen protein.     28   8.2  

>Z74031-3|CAA98455.1|  245|Caenorhabditis elegans Hypothetical
           protein F32D8.3 protein.
          Length = 245

 Score = 29.9 bits (64), Expect = 2.0
 Identities = 11/24 (45%), Positives = 14/24 (58%)
 Frame = +1

Query: 445 RSRSHCATLAPCSRSSPGCQLCEP 516
           +S SHCA  + C+   P C  CEP
Sbjct: 67  QSFSHCACESTCNNPDPYCSKCEP 90


>U53154-2|AAC25856.1|  358|Caenorhabditis elegans Hypothetical
           protein C33G8.12 protein.
          Length = 358

 Score = 29.1 bits (62), Expect = 3.6
 Identities = 11/42 (26%), Positives = 25/42 (59%)
 Frame = -3

Query: 264 LHSNAIAYRSVFFLITNDGRISDLYDDNVDIFADCLIILIIE 139
           ++ + + Y ++F L+  DG  SD+ DD V++  +   +++ E
Sbjct: 258 MNYDKVEYMAIFLLLLFDGAYSDISDDGVNLCTNIRKVILRE 299


>AL033514-11|CAA22083.2|  298|Caenorhabditis elegans Hypothetical
           protein Y75B8A.10 protein.
          Length = 298

 Score = 28.7 bits (61), Expect = 4.7
 Identities = 15/55 (27%), Positives = 32/55 (58%), Gaps = 3/55 (5%)
 Frame = +3

Query: 471 SSVQPVLAWLSALRASTEDYDQLPVVVPAEESS-RASPDSAFD--EILSQLGKEI 626
           SS++  L     L    +DY +L +++P EE+S +  P+ ++   E++ + GK++
Sbjct: 112 SSMKETLIHQGTLAPPPKDYMKLLLILPVEEASVQVMPEKSYGAFELMRKFGKDV 166


>U61953-3|AAC48071.3|  491|Caenorhabditis elegans Hypothetical
           protein R08C7.5 protein.
          Length = 491

 Score = 28.3 bits (60), Expect = 6.2
 Identities = 11/36 (30%), Positives = 17/36 (47%)
 Frame = +1

Query: 475 PCSRSSPGCQLCEPPPRITTNSPSLFLPKNRPAPPR 582
           P     P  +   PP ++ T+SP   +PK    PP+
Sbjct: 310 PSKEEKPTAKTAAPPVKLLTSSPPPKIPKTVAQPPK 345


>Z77655-1|CAB01137.1|  393|Caenorhabditis elegans Hypothetical
           protein C56A3.1 protein.
          Length = 393

 Score = 27.9 bits (59), Expect = 8.2
 Identities = 11/33 (33%), Positives = 18/33 (54%)
 Frame = +1

Query: 472 APCSRSSPGCQLCEPPPRITTNSPSLFLPKNRP 570
           AP    +P C +C PPP+     P+ + P+ +P
Sbjct: 49  APACPQAPSCPVC-PPPQPCPAPPAAYCPQVQP 80


>U50191-2|AAK31556.2|  335|Caenorhabditis elegans Dumpy : shorter
           than wild-typeprotein 10, isoform a protein.
          Length = 335

 Score = 27.9 bits (59), Expect = 8.2
 Identities = 20/58 (34%), Positives = 27/58 (46%), Gaps = 4/58 (6%)
 Frame = +1

Query: 433 GFRTRSRSHCATLAPCSRSSPGCQLCEPP-PRITTNSPSL-FLPKN--RPAPPRIAPS 594
           GFR  +     T AP     PGC +  PP PR ++ +P    LP N  +P  P   P+
Sbjct: 81  GFRPTAYGDEITGAPLETECPGCCIPGPPGPRGSSGTPGKPGLPGNAGKPGMPGTTPN 138


>U50191-1|AAO38600.2|  372|Caenorhabditis elegans Dumpy : shorter
           than wild-typeprotein 10, isoform b protein.
          Length = 372

 Score = 27.9 bits (59), Expect = 8.2
 Identities = 20/58 (34%), Positives = 27/58 (46%), Gaps = 4/58 (6%)
 Frame = +1

Query: 433 GFRTRSRSHCATLAPCSRSSPGCQLCEPP-PRITTNSPSL-FLPKN--RPAPPRIAPS 594
           GFR  +     T AP     PGC +  PP PR ++ +P    LP N  +P  P   P+
Sbjct: 118 GFRPTAYGDEITGAPLETECPGCCIPGPPGPRGSSGTPGKPGLPGNAGKPGMPGTTPN 175


>L12692-1|AAA17395.2|  356|Caenorhabditis elegans collagen protein.
          Length = 356

 Score = 27.9 bits (59), Expect = 8.2
 Identities = 20/58 (34%), Positives = 27/58 (46%), Gaps = 4/58 (6%)
 Frame = +1

Query: 433 GFRTRSRSHCATLAPCSRSSPGCQLCEPP-PRITTNSPSL-FLPKN--RPAPPRIAPS 594
           GFR  +     T AP     PGC +  PP PR ++ +P    LP N  +P  P   P+
Sbjct: 102 GFRPTAYGDEITGAPLETECPGCCIPGPPGPRGSSGTPGKPGLPGNAGKPGMPGTTPN 159


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,618,780
Number of Sequences: 27780
Number of extensions: 305099
Number of successful extensions: 1185
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 1104
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1184
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1798543458
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)