Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P16_F_J04
         (755 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ091184-1|AAZ42364.1|  157|Apis mellifera lipophorin receptor p...    23   3.1  
DQ091183-1|AAZ42363.1|  128|Apis mellifera lipophorin receptor p...    23   3.1  
DQ667183-1|ABG75735.1|  463|Apis mellifera GABA-gated ion channe...    23   4.1  
DQ667184-1|ABG75736.1|  489|Apis mellifera GABA-gated ion channe...    22   5.4  
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              22   5.4  
X72576-1|CAA51168.1|  144|Apis mellifera Apidaecin precursor pro...    21   9.4  
X72575-1|CAA51167.1|  168|Apis mellifera Apidaecin precursor pro...    21   9.4  
AF442148-1|AAL35349.1|  199|Apis mellifera apidaecin precursor p...    21   9.4  

>DQ091184-1|AAZ42364.1|  157|Apis mellifera lipophorin receptor
           protein.
          Length = 157

 Score = 23.0 bits (47), Expect = 3.1
 Identities = 11/25 (44%), Positives = 13/25 (52%), Gaps = 1/25 (4%)
 Frame = +1

Query: 478 CSRSSPGCQ-LCEPPPRITTNSPSL 549
           C   +  C  LC P PRI + SP L
Sbjct: 36  CQAVNGHCSHLCLPAPRINSKSPLL 60


>DQ091183-1|AAZ42363.1|  128|Apis mellifera lipophorin receptor
           protein.
          Length = 128

 Score = 23.0 bits (47), Expect = 3.1
 Identities = 11/25 (44%), Positives = 13/25 (52%), Gaps = 1/25 (4%)
 Frame = +1

Query: 478 CSRSSPGCQ-LCEPPPRITTNSPSL 549
           C   +  C  LC P PRI + SP L
Sbjct: 36  CQAVNGHCSHLCLPAPRINSKSPLL 60


>DQ667183-1|ABG75735.1|  463|Apis mellifera GABA-gated ion channel
           protein.
          Length = 463

 Score = 22.6 bits (46), Expect = 4.1
 Identities = 11/28 (39%), Positives = 12/28 (42%)
 Frame = +1

Query: 499 CQLCEPPPRITTNSPSLFLPKNRPAPPR 582
           C  C PPPR T  S      + R   PR
Sbjct: 389 CVACSPPPRQTPPSRKESGRRRRRRTPR 416


>DQ667184-1|ABG75736.1|  489|Apis mellifera GABA-gated ion channel
           protein.
          Length = 489

 Score = 22.2 bits (45), Expect = 5.4
 Identities = 8/20 (40%), Positives = 13/20 (65%)
 Frame = -2

Query: 157 NYTYYRIQKKKKNTERARTD 98
           NYTY+  + KKK+ ++   D
Sbjct: 326 NYTYWGARAKKKSKKKESDD 345


>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 22.2 bits (45), Expect = 5.4
 Identities = 8/17 (47%), Positives = 9/17 (52%)
 Frame = +2

Query: 620  RNLQARGVPSKPPPTAR 670
            RN+   G P  PPP  R
Sbjct: 1849 RNIPVSGSPEPPPPPPR 1865


>X72576-1|CAA51168.1|  144|Apis mellifera Apidaecin precursor
           protein.
          Length = 144

 Score = 21.4 bits (43), Expect = 9.4
 Identities = 10/25 (40%), Positives = 14/25 (56%)
 Frame = +1

Query: 511 EPPPRITTNSPSLFLPKNRPAPPRI 585
           EP      N P +++P+ RP  PRI
Sbjct: 121 EPEAEPGNNRP-VYIPQPRPPHPRI 144


>X72575-1|CAA51167.1|  168|Apis mellifera Apidaecin precursor
           protein.
          Length = 168

 Score = 21.4 bits (43), Expect = 9.4
 Identities = 10/25 (40%), Positives = 14/25 (56%)
 Frame = +1

Query: 511 EPPPRITTNSPSLFLPKNRPAPPRI 585
           EP      N P +++P+ RP  PRI
Sbjct: 145 EPEAEPGNNRP-VYIPQPRPPHPRI 168


>AF442148-1|AAL35349.1|  199|Apis mellifera apidaecin precursor
           protein.
          Length = 199

 Score = 21.4 bits (43), Expect = 9.4
 Identities = 10/25 (40%), Positives = 14/25 (56%)
 Frame = +1

Query: 511 EPPPRITTNSPSLFLPKNRPAPPRI 585
           EP      N P +++P+ RP  PRI
Sbjct: 176 EPEAEPGNNRP-VYIPQPRPPHPRI 199


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 197,900
Number of Sequences: 438
Number of extensions: 3865
Number of successful extensions: 18
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 16
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 18
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 23753925
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)