Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P16_F_J03
(806 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC14F5.08 |med7||mediator complex subunit Med7|Schizosaccharom... 30 0.44
SPAC9E9.12c |ybt1|abc1|ABC transporter Ybt1|Schizosaccharomyces ... 28 1.4
SPBC27B12.05 |||WD repeat protein|Schizosaccharomyces pombe|chr ... 27 4.1
SPAC17G8.09 |shg1||Csp15 family protein|Schizosaccharomyces pomb... 27 4.1
SPBC16C6.09 |ogm4|oma4|protein O-mannosyltransferase Ogm4|Schizo... 25 9.6
SPCC11E10.03 |mug1||dynactin complex subunit |Schizosaccharomyce... 25 9.6
SPBC8D2.17 |||alpha-1,2-galactosyltransferase|Schizosaccharomyce... 25 9.6
SPAC13G6.12c |chs1|SPAC24B11.01c|chitin synthase I|Schizosacchar... 25 9.6
SPCC417.06c |ppk35|mug27|serine/threonine protein kinase Ppk35|S... 25 9.6
>SPBC14F5.08 |med7||mediator complex subunit
Med7|Schizosaccharomyces pombe|chr 2|||Manual
Length = 376
Score = 29.9 bits (64), Expect = 0.44
Identities = 18/69 (26%), Positives = 31/69 (44%)
Frame = +2
Query: 464 SLKKELEEQDLYEPLDEHSSGPLGDKFARLWEEEVAKAGNKRKPSLLRVILKAYAARCML 643
SLKKE E+ + EPLD +G + K+ + L+++ +AY R +
Sbjct: 173 SLKKEEEDIQMKEPLDSQDTGAVSASSVNEGFRADQKSKDGETSDLIKIPRRAYELRFLS 232
Query: 644 YGFILLIME 670
+L +E
Sbjct: 233 RSLMLNFLE 241
>SPAC9E9.12c |ybt1|abc1|ABC transporter Ybt1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1427
Score = 28.3 bits (60), Expect = 1.4
Identities = 28/118 (23%), Positives = 54/118 (45%), Gaps = 1/118 (0%)
Frame = +2
Query: 371 FKRKNRPAHPRASANPLSAL-TFTWTLPVFWSSLKKELEEQDLYEPLDEHSSGPLGDKFA 547
F + RP+ P + + S + T+ W + W S KK + D+ D +
Sbjct: 185 FSKVARPS-PEQTCSIFSLIFTYGWLNGIIWKSWKKPITLTDVPALPDTECT-------- 235
Query: 548 RLWEEEVAKAGNKRKPSLLRVILKAYAARCMLYGFILLIMECVIKIAQPIFLGWLVEY 721
++W AK N RK SL+ IL + + +L F+ +++ + + P+ + L++Y
Sbjct: 236 QIWYSRFAK--NDRK-SLMHTILLSLKSTILLMVFLSVLVSSTLFVT-PLAIKKLLQY 289
>SPBC27B12.05 |||WD repeat protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 391
Score = 26.6 bits (56), Expect = 4.1
Identities = 15/43 (34%), Positives = 24/43 (55%), Gaps = 5/43 (11%)
Frame = +3
Query: 516 IPQVHSVINSLAYGRRRLPRLA-----INGNPAYSASYLRHTL 629
IP++ SV+ + G+ L RL +NGNP Y S++ H +
Sbjct: 287 IPELQSVVCASQSGQLTLLRLICTTKILNGNPIYVYSFVPHKI 329
>SPAC17G8.09 |shg1||Csp15 family protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 128
Score = 26.6 bits (56), Expect = 4.1
Identities = 14/38 (36%), Positives = 21/38 (55%)
Frame = +2
Query: 461 SSLKKELEEQDLYEPLDEHSSGPLGDKFARLWEEEVAK 574
S KKE L + + E SGPL D+ ++ +EE+ K
Sbjct: 14 SKFKKEGHFDRLRKQILETESGPLLDRLKKIIDEEMVK 51
>SPBC16C6.09 |ogm4|oma4|protein O-mannosyltransferase
Ogm4|Schizosaccharomyces pombe|chr 2|||Manual
Length = 778
Score = 25.4 bits (53), Expect = 9.6
Identities = 16/48 (33%), Positives = 26/48 (54%)
Frame = -3
Query: 390 GRFFLLKDSMLFLRIRCEQFDHRCFICLLFNKLRHDPFVTQYFLNIYF 247
GR LL ++LF + C + C++ F KLRH PF ++ ++F
Sbjct: 193 GRLILLDATLLFSMV-CAIY---CYV--RFFKLRHTPFSRPWWAWLFF 234
>SPCC11E10.03 |mug1||dynactin complex subunit |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 351
Score = 25.4 bits (53), Expect = 9.6
Identities = 13/42 (30%), Positives = 23/42 (54%)
Frame = +2
Query: 461 SSLKKELEEQDLYEPLDEHSSGPLGDKFARLWEEEVAKAGNK 586
S L++ E+ +YE E + LG+ RLW++ + G+K
Sbjct: 67 SELEELWEQSMMYEEQKELTQ--LGEMLDRLWDKHINSEGSK 106
>SPBC8D2.17 |||alpha-1,2-galactosyltransferase|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 351
Score = 25.4 bits (53), Expect = 9.6
Identities = 13/35 (37%), Positives = 18/35 (51%)
Frame = +1
Query: 340 TSNSKKQHGVLQKKKSPCSPQSFSKSIVSLNFHLD 444
+++S GV + K SP P S IVS + H D
Sbjct: 44 SAHSSSYKGVSKAKTSPQDPDSVVMLIVSFDDHYD 78
>SPAC13G6.12c |chs1|SPAC24B11.01c|chitin synthase
I|Schizosaccharomyces pombe|chr 1|||Manual
Length = 859
Score = 25.4 bits (53), Expect = 9.6
Identities = 9/31 (29%), Positives = 18/31 (58%)
Frame = +1
Query: 337 LTSNSKKQHGVLQKKKSPCSPQSFSKSIVSL 429
L ++++ ++ + C PQ FSKS+ +L
Sbjct: 147 LPQQTEREFAYMRYSAATCDPQDFSKSLFTL 177
>SPCC417.06c |ppk35|mug27|serine/threonine protein kinase
Ppk35|Schizosaccharomyces pombe|chr 3|||Manual
Length = 624
Score = 25.4 bits (53), Expect = 9.6
Identities = 11/27 (40%), Positives = 17/27 (62%), Gaps = 2/27 (7%)
Frame = -2
Query: 706 TKKYWLSYLYHAFHDQQ--YESVEHAP 632
T WL LY+AF D++ Y ++E+ P
Sbjct: 217 TNSEWLVKLYYAFQDKEKVYLAMEYVP 243
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,212,385
Number of Sequences: 5004
Number of extensions: 67797
Number of successful extensions: 195
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 190
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 195
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 392429240
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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