Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P16_F_J03
(806 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
04_04_1183 - 31537196-31537290,31537665-31537986,31538176-315382... 43 2e-04
05_04_0203 + 19016547-19016860,19017020-19017169,19017946-190180... 32 0.62
11_01_0091 - 681452-681739,682532-682630,682697-682838,682875-68... 31 1.4
03_06_0507 + 34404843-34404968,34405091-34405151,34405260-344052... 29 5.8
02_03_0300 + 17454622-17455402,17455535-17456977,17457015-174573... 29 5.8
11_04_0397 - 17230152-17231453 28 7.6
>04_04_1183 -
31537196-31537290,31537665-31537986,31538176-31538277,
31538826-31539071,31539385-31539506,31539588-31540344,
31540447-31540770,31540872-31541052,31541208-31541602,
31541877-31541942,31542225-31542377,31542593-31542691,
31542776-31542982,31543432-31543572,31543852-31544019,
31544302-31544395,31544479-31544585,31545140-31545274,
31545549-31545656,31545975-31546049,31546197-31546262,
31546500-31546556,31546678-31546702,31546809-31546889,
31546966-31547080,31547211-31547370,31547444-31547483,
31547599-31547780,31547905-31548234
Length = 1650
Score = 43.2 bits (97), Expect = 2e-04
Identities = 28/107 (26%), Positives = 48/107 (44%)
Frame = +2
Query: 398 PRASANPLSALTFTWTLPVFWSSLKKELEEQDLYEPLDEHSSGPLGDKFARLWEEEVAKA 577
P AN S + F+W P+ K+ + ++D+++ + L ++F + W E+
Sbjct: 229 PERHANIFSRIFFSWMTPLMQQGFKRPITDKDIWKLDSWDETETLYNRFQKCWNNEL--- 285
Query: 578 GNKRKPSLLRVILKAYAARCMLYGFILLIMECVIKIAQPIFLGWLVE 718
K KP LLR + + R L GF I + P+ L L+E
Sbjct: 286 -QKPKPWLLRALHSSLGGRFWLGGF-FKIGNDASQFVGPLILNLLLE 330
>05_04_0203 +
19016547-19016860,19017020-19017169,19017946-19018081,
19018222-19018323,19018556-19018675,19018800-19018880,
19019041-19019381,19020296-19020589,19020701-19021025,
19021167-19021400,19021506-19021760
Length = 783
Score = 31.9 bits (69), Expect = 0.62
Identities = 15/47 (31%), Positives = 24/47 (51%)
Frame = +2
Query: 416 PLSALTFTWTLPVFWSSLKKELEEQDLYEPLDEHSSGPLGDKFARLW 556
P++ L F +P+ W+S E E+ Y+ +D+ S LG R W
Sbjct: 111 PIAVLAFIVLVPINWASGTLEKEKSLSYDQIDKLSISNLGKGSKRFW 157
>11_01_0091 -
681452-681739,682532-682630,682697-682838,682875-682991,
683133-683176
Length = 229
Score = 30.7 bits (66), Expect = 1.4
Identities = 25/84 (29%), Positives = 34/84 (40%), Gaps = 4/84 (4%)
Frame = +2
Query: 341 HRILRNNMESFKRKNRPAHPRASANPLSALTFTWTLPVFWSSLKKELEEQDLYEPLDEHS 520
H+ + F+ P + + N SAL WTL L E+EEQ+ Y+
Sbjct: 31 HQTHIDRWNQFEANRMPDNAMHNRNYRSALRLAWTLTDILDDL-IEVEEQNKYDTSTHRG 89
Query: 521 S----GPLGDKFARLWEEEVAKAG 580
S GP+ DK R V AG
Sbjct: 90 STVGMGPVRDKVTRELIRTVNDAG 113
>03_06_0507 +
34404843-34404968,34405091-34405151,34405260-34405296,
34405365-34405386,34405861-34405957,34406037-34406180,
34407034-34407173,34408205-34408255,34408347-34408429,
34408515-34408590,34408646-34408760,34409080-34409575,
34409682-34409895,34410000-34410070,34410527-34410695,
34410787-34410916,34411330-34411742,34411839-34412039
Length = 881
Score = 28.7 bits (61), Expect = 5.8
Identities = 21/71 (29%), Positives = 32/71 (45%), Gaps = 2/71 (2%)
Frame = +2
Query: 317 KHRWSNCSHRILRNNMESFKRKNRPAHPRASANPLSALTFTWTLPVFWSSLKKELEE--Q 490
+H + + R+L NN E+F + RP A N L W + +L+E Q
Sbjct: 662 EHEHALVALRVLNNNPETFGAERRPIVEFALENIEKV-----RLQKIWKERRDKLQEGAQ 716
Query: 491 DLYEPLDEHSS 523
D PL +HS+
Sbjct: 717 DKARPLGDHSA 727
>02_03_0300 + 17454622-17455402,17455535-17456977,17457015-17457317,
17458429-17458519,17458623-17459757,17459998-17460077,
17460449-17460533,17460614-17460705,17461079-17461147,
17461227-17461263,17461351-17461433,17461695-17461840,
17461868-17462138,17462245-17462281,17462428-17462721
Length = 1648
Score = 28.7 bits (61), Expect = 5.8
Identities = 13/40 (32%), Positives = 25/40 (62%)
Frame = +1
Query: 364 GVLQKKKSPCSPQSFSKSIVSLNFHLDLASILEQFEKGIG 483
GVL + S SP++FSK +++ + + +S L +F + +G
Sbjct: 945 GVLSSQNSVVSPRNFSKYLLNGTYTMGSSSSLVKFTQEVG 984
>11_04_0397 - 17230152-17231453
Length = 433
Score = 28.3 bits (60), Expect = 7.6
Identities = 15/41 (36%), Positives = 21/41 (51%)
Frame = +3
Query: 483 KSKICMSP*MNIPQVHSVINSLAYGRRRLPRLAINGNPAYS 605
K +C S P V+NSLA+G L A++G A+S
Sbjct: 324 KDHLCSSSSSRQPVAPLVVNSLAFGTVMLSYSALDGGRAFS 364
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,441,067
Number of Sequences: 37544
Number of extensions: 425252
Number of successful extensions: 1138
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 1114
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1138
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2197677108
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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