Bombyx BLAST Result against mosquito

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P16_F_J03
         (806 letters)

Database: mosquito 
           2352 sequences; 563,979 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB090818-2|BAC57912.1|  988|Anopheles gambiae reverse transcript...    26   1.6  
DQ230894-1|ABD94313.1|  315|Anopheles gambiae zinc finger protei...    23   8.4  
DQ230893-1|ABD94311.1|  315|Anopheles gambiae zinc finger protei...    23   8.4  
AJ535206-1|CAD59406.1| 1376|Anopheles gambiae SMC4 protein protein.    23   8.4  
AJ271193-1|CAB66001.1| 1623|Anopheles gambiae laminin gamma 1 pr...    23   8.4  
AB097127-1|BAC82595.1| 1209|Anopheles gambiae reverse transcript...    23   8.4  

>AB090818-2|BAC57912.1|  988|Anopheles gambiae reverse transcriptase
           protein.
          Length = 988

 Score = 25.8 bits (54), Expect = 1.6
 Identities = 12/31 (38%), Positives = 16/31 (51%)
 Frame = +2

Query: 467 LKKELEEQDLYEPLDEHSSGPLGDKFARLWE 559
           L K+  +QDL E L+ H  GP      + WE
Sbjct: 337 LSKDQHKQDLPEQLEPHGFGPAYQIRKQQWE 367


>DQ230894-1|ABD94313.1|  315|Anopheles gambiae zinc finger protein
           183 protein.
          Length = 315

 Score = 23.4 bits (48), Expect = 8.4
 Identities = 9/21 (42%), Positives = 11/21 (52%)
 Frame = +2

Query: 266 YCVTKGSCRSLLNRRQIKHRW 328
           YC    SC+ L +R   KH W
Sbjct: 189 YCGFGDSCKFLHDRSDYKHGW 209


>DQ230893-1|ABD94311.1|  315|Anopheles gambiae zinc finger protein
           183 protein.
          Length = 315

 Score = 23.4 bits (48), Expect = 8.4
 Identities = 9/21 (42%), Positives = 11/21 (52%)
 Frame = +2

Query: 266 YCVTKGSCRSLLNRRQIKHRW 328
           YC    SC+ L +R   KH W
Sbjct: 189 YCGFGDSCKFLHDRSDYKHGW 209


>AJ535206-1|CAD59406.1| 1376|Anopheles gambiae SMC4 protein protein.
          Length = 1376

 Score = 23.4 bits (48), Expect = 8.4
 Identities = 13/35 (37%), Positives = 20/35 (57%)
 Frame = +3

Query: 162  QYILIRVPSNFFGISEIKVTKWVVFVCF*SKYLKN 266
            Q+I+I + SN F +S+  V  + V  C  S  +KN
Sbjct: 1241 QFIIISLRSNMFELSDYLVGIYKVKDCTDSVTIKN 1275


>AJ271193-1|CAB66001.1| 1623|Anopheles gambiae laminin gamma 1
           precursor protein.
          Length = 1623

 Score = 23.4 bits (48), Expect = 8.4
 Identities = 8/27 (29%), Positives = 12/27 (44%)
 Frame = -2

Query: 772 RSAEICVRGRHFTVGAVIFHQPTKKYW 692
           +S ++C  G+H       FH P    W
Sbjct: 87  KSCDVCHAGQHSPQFLTDFHDPNNPTW 113


>AB097127-1|BAC82595.1| 1209|Anopheles gambiae reverse transcriptase
           protein.
          Length = 1209

 Score = 23.4 bits (48), Expect = 8.4
 Identities = 9/29 (31%), Positives = 14/29 (48%)
 Frame = +2

Query: 323 RWSNCSHRILRNNMESFKRKNRPAHPRAS 409
           +WSN     L   +     K++  HP+AS
Sbjct: 844 KWSNTDLEALERTIRVVSTKHQMRHPKAS 872


  Database: mosquito
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 563,979
  Number of sequences in database:  2352
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 801,333
Number of Sequences: 2352
Number of extensions: 17133
Number of successful extensions: 22
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 22
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 22
length of database: 563,979
effective HSP length: 63
effective length of database: 415,803
effective search space used: 85239615
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)