Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P16_F_J03
(806 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z81016-6|CAB02667.1| 1573|Caenorhabditis elegans Hypothetical pr... 33 0.32
Z48621-13|CAA88549.1| 1573|Caenorhabditis elegans Hypothetical p... 33 0.32
AL032637-11|CAA21622.3| 1119|Caenorhabditis elegans Hypothetical... 33 0.32
U66261-1|AAB07022.1| 1525|Caenorhabditis elegans multidrug resis... 31 0.97
U41554-4|AAA83299.2| 1525|Caenorhabditis elegans Multidrug resis... 31 0.97
U66260-1|AAB07021.1| 1540|Caenorhabditis elegans multidrug resis... 31 1.3
U41554-8|ABA03118.1| 1534|Caenorhabditis elegans Multidrug resis... 31 1.3
U41554-7|AAM69107.1| 1534|Caenorhabditis elegans Multidrug resis... 31 1.3
U41554-6|AAL06032.1| 1534|Caenorhabditis elegans Multidrug resis... 31 1.3
U41554-5|AAD31550.2| 1528|Caenorhabditis elegans Multidrug resis... 31 1.3
AB199793-1|BAD88409.1| 1534|Caenorhabditis elegans multidrug res... 31 1.3
U41015-1|AAA82317.2| 1396|Caenorhabditis elegans Multidrug resis... 29 3.0
Z78200-10|CAN86608.1| 1312|Caenorhabditis elegans Hypothetical p... 29 3.9
Z78200-9|CAB01581.1| 1298|Caenorhabditis elegans Hypothetical pr... 29 3.9
Z75312-1|CAA99730.1| 1298|Caenorhabditis elegans RAD50 homologue... 29 3.9
Z46793-4|CAA86773.1| 889|Caenorhabditis elegans Hypothetical pr... 29 3.9
Z34800-5|CAA84325.1| 889|Caenorhabditis elegans Hypothetical pr... 29 3.9
U39677-1|AAC47961.2| 457|Caenorhabditis elegans Hypothetical pr... 29 3.9
U49941-10|AAB53870.1| 73|Caenorhabditis elegans Hypothetical p... 29 5.2
AY130758-3|AAN61519.1| 10578|Caenorhabditis elegans 1MDa_1 prote... 28 9.0
AY130758-2|AAN61518.1| 18519|Caenorhabditis elegans 2MDa_2 prote... 28 9.0
AY130758-1|AAN61517.1| 18534|Caenorhabditis elegans 2MDa_1 prote... 28 9.0
>Z81016-6|CAB02667.1| 1573|Caenorhabditis elegans Hypothetical
protein F21G4.2 protein.
Length = 1573
Score = 32.7 bits (71), Expect = 0.32
Identities = 18/63 (28%), Positives = 31/63 (49%)
Frame = +2
Query: 386 RPAHPRASANPLSALTFTWTLPVFWSSLKKELEEQDLYEPLDEHSSGPLGDKFARLWEEE 565
R P +++ L+ +T W + +KK LE DLY + +S L K+ LW+++
Sbjct: 214 RNPSPETTSSFLNRITMWWFNSLCSLGVKKPLEVSDLYSLNEADTSNLLVPKWYNLWDKQ 273
Query: 566 VAK 574
K
Sbjct: 274 SKK 276
>Z48621-13|CAA88549.1| 1573|Caenorhabditis elegans Hypothetical
protein F21G4.2 protein.
Length = 1573
Score = 32.7 bits (71), Expect = 0.32
Identities = 18/63 (28%), Positives = 31/63 (49%)
Frame = +2
Query: 386 RPAHPRASANPLSALTFTWTLPVFWSSLKKELEEQDLYEPLDEHSSGPLGDKFARLWEEE 565
R P +++ L+ +T W + +KK LE DLY + +S L K+ LW+++
Sbjct: 214 RNPSPETTSSFLNRITMWWFNSLCSLGVKKPLEVSDLYSLNEADTSNLLVPKWYNLWDKQ 273
Query: 566 VAK 574
K
Sbjct: 274 SKK 276
>AL032637-11|CAA21622.3| 1119|Caenorhabditis elegans Hypothetical
protein Y43F8C.12 protein.
Length = 1119
Score = 32.7 bits (71), Expect = 0.32
Identities = 15/61 (24%), Positives = 30/61 (49%)
Frame = +2
Query: 392 AHPRASANPLSALTFTWTLPVFWSSLKKELEEQDLYEPLDEHSSGPLGDKFARLWEEEVA 571
A P ++ L+ LT W + W+ +++LE D++E + + L + + WE +
Sbjct: 206 ASPELQSSFLNRLTLWWFNSIPWTGARRDLEIDDIFELNERSGTEFLSELWESFWEPKRL 265
Query: 572 K 574
K
Sbjct: 266 K 266
>U66261-1|AAB07022.1| 1525|Caenorhabditis elegans multidrug
resistance related protein2 protein.
Length = 1525
Score = 31.1 bits (67), Expect = 0.97
Identities = 29/125 (23%), Positives = 56/125 (44%), Gaps = 11/125 (8%)
Frame = +2
Query: 380 KNRPAHPRASANPLSALTFTWTLPVFWSSLKKELEEQDLYE-----------PLDEHSSG 526
K+ + P +A+ ++ LTF W + + KK LE +DL++ P +
Sbjct: 202 KSESSCPEYTASFINRLTFQWFTGLAYLGNKKSLENEDLWDLNEIDKAENLIPSFMQNLK 261
Query: 527 PLGDKFARLWEEEVAKAGNKRKPSLLRVILKAYAARCMLYGFILLIMECVIKIAQPIFLG 706
P D++ + +++ + A K PS + I K Y +L GF + +++ P L
Sbjct: 262 PRIDEYHQNIKKDPSAALPKNHPSFVIPIFKTY-KYTLLAGFFYKLCFDMLQFLAPQLLK 320
Query: 707 WLVEY 721
L+ +
Sbjct: 321 QLIGF 325
>U41554-4|AAA83299.2| 1525|Caenorhabditis elegans Multidrug
resistance protein familyprotein 2 protein.
Length = 1525
Score = 31.1 bits (67), Expect = 0.97
Identities = 29/125 (23%), Positives = 56/125 (44%), Gaps = 11/125 (8%)
Frame = +2
Query: 380 KNRPAHPRASANPLSALTFTWTLPVFWSSLKKELEEQDLYE-----------PLDEHSSG 526
K+ + P +A+ ++ LTF W + + KK LE +DL++ P +
Sbjct: 202 KSESSCPEYTASFINRLTFQWFTGLAYLGNKKSLENEDLWDLNEIDKAENLIPSFMQNLK 261
Query: 527 PLGDKFARLWEEEVAKAGNKRKPSLLRVILKAYAARCMLYGFILLIMECVIKIAQPIFLG 706
P D++ + +++ + A K PS + I K Y +L GF + +++ P L
Sbjct: 262 PRIDEYHQNIKKDPSAALPKNHPSFVIPIFKTY-KYTLLAGFFYKLCFDMLQFLAPQLLK 320
Query: 707 WLVEY 721
L+ +
Sbjct: 321 QLIGF 325
>U66260-1|AAB07021.1| 1540|Caenorhabditis elegans multidrug
resistance related protein1 protein.
Length = 1540
Score = 30.7 bits (66), Expect = 1.3
Identities = 30/120 (25%), Positives = 53/120 (44%), Gaps = 12/120 (10%)
Frame = +2
Query: 398 PRASANPLSALTFTWTLPVFWSSLKKELEEQDLYEPLDEHSSG------------PLGDK 541
P +A+ L+ LTF W + + KK LE++DL++ L+E P +
Sbjct: 208 PEYTASFLNQLTFQWFSGLAYLGNKKSLEKEDLWD-LNERDKAENIIPSFIENLIPEVEG 266
Query: 542 FARLWEEEVAKAGNKRKPSLLRVILKAYAARCMLYGFILLIMECVIKIAQPIFLGWLVEY 721
+ R ++ A K PS+L I K Y + G L+ + +++ P L L+ +
Sbjct: 267 YRRKIKKNPEAAIPKNHPSILIPIFKTYKFTLLAGGCYKLMFD-LLQFVAPELLRQLISF 325
>U41554-8|ABA03118.1| 1534|Caenorhabditis elegans Multidrug
resistance protein familyprotein 1, isoform e protein.
Length = 1534
Score = 30.7 bits (66), Expect = 1.3
Identities = 30/120 (25%), Positives = 53/120 (44%), Gaps = 12/120 (10%)
Frame = +2
Query: 398 PRASANPLSALTFTWTLPVFWSSLKKELEEQDLYEPLDEHSSG------------PLGDK 541
P +A+ L+ LTF W + + KK LE++DL++ L+E P +
Sbjct: 208 PEYTASFLNQLTFQWFSGLAYLGNKKSLEKEDLWD-LNERDKAENIIPSFIENLIPEVEG 266
Query: 542 FARLWEEEVAKAGNKRKPSLLRVILKAYAARCMLYGFILLIMECVIKIAQPIFLGWLVEY 721
+ R ++ A K PS+L I K Y + G L+ + +++ P L L+ +
Sbjct: 267 YRRKIKKNPEAAIPKNHPSILIPIFKTYKFTLLAGGCYKLMFD-LLQFVAPELLRQLISF 325
>U41554-7|AAM69107.1| 1534|Caenorhabditis elegans Multidrug
resistance protein familyprotein 1, isoform c protein.
Length = 1534
Score = 30.7 bits (66), Expect = 1.3
Identities = 30/120 (25%), Positives = 53/120 (44%), Gaps = 12/120 (10%)
Frame = +2
Query: 398 PRASANPLSALTFTWTLPVFWSSLKKELEEQDLYEPLDEHSSG------------PLGDK 541
P +A+ L+ LTF W + + KK LE++DL++ L+E P +
Sbjct: 208 PEYTASFLNQLTFQWFSGLAYLGNKKSLEKEDLWD-LNERDKAENIIPSFIENLIPEVEG 266
Query: 542 FARLWEEEVAKAGNKRKPSLLRVILKAYAARCMLYGFILLIMECVIKIAQPIFLGWLVEY 721
+ R ++ A K PS+L I K Y + G L+ + +++ P L L+ +
Sbjct: 267 YRRKIKKNPEAAIPKNHPSILIPIFKTYKFTLLAGGCYKLMFD-LLQFVAPELLRQLISF 325
>U41554-6|AAL06032.1| 1534|Caenorhabditis elegans Multidrug
resistance protein familyprotein 1, isoform b protein.
Length = 1534
Score = 30.7 bits (66), Expect = 1.3
Identities = 30/120 (25%), Positives = 53/120 (44%), Gaps = 12/120 (10%)
Frame = +2
Query: 398 PRASANPLSALTFTWTLPVFWSSLKKELEEQDLYEPLDEHSSG------------PLGDK 541
P +A+ L+ LTF W + + KK LE++DL++ L+E P +
Sbjct: 208 PEYTASFLNQLTFQWFSGLAYLGNKKSLEKEDLWD-LNERDKAENIIPSFIENLIPEVEG 266
Query: 542 FARLWEEEVAKAGNKRKPSLLRVILKAYAARCMLYGFILLIMECVIKIAQPIFLGWLVEY 721
+ R ++ A K PS+L I K Y + G L+ + +++ P L L+ +
Sbjct: 267 YRRKIKKNPEAAIPKNHPSILIPIFKTYKFTLLAGGCYKLMFD-LLQFVAPELLRQLISF 325
>U41554-5|AAD31550.2| 1528|Caenorhabditis elegans Multidrug
resistance protein familyprotein 1, isoform a protein.
Length = 1528
Score = 30.7 bits (66), Expect = 1.3
Identities = 30/120 (25%), Positives = 53/120 (44%), Gaps = 12/120 (10%)
Frame = +2
Query: 398 PRASANPLSALTFTWTLPVFWSSLKKELEEQDLYEPLDEHSSG------------PLGDK 541
P +A+ L+ LTF W + + KK LE++DL++ L+E P +
Sbjct: 208 PEYTASFLNQLTFQWFSGLAYLGNKKSLEKEDLWD-LNERDKAENIIPSFIENLIPEVEG 266
Query: 542 FARLWEEEVAKAGNKRKPSLLRVILKAYAARCMLYGFILLIMECVIKIAQPIFLGWLVEY 721
+ R ++ A K PS+L I K Y + G L+ + +++ P L L+ +
Sbjct: 267 YRRKIKKNPEAAIPKNHPSILIPIFKTYKFTLLAGGCYKLMFD-LLQFVAPELLRQLISF 325
>AB199793-1|BAD88409.1| 1534|Caenorhabditis elegans multidrug
resistance-associatedprotein protein.
Length = 1534
Score = 30.7 bits (66), Expect = 1.3
Identities = 30/120 (25%), Positives = 53/120 (44%), Gaps = 12/120 (10%)
Frame = +2
Query: 398 PRASANPLSALTFTWTLPVFWSSLKKELEEQDLYEPLDEHSSG------------PLGDK 541
P +A+ L+ LTF W + + KK LE++DL++ L+E P +
Sbjct: 208 PEYTASFLNQLTFQWFSGLAYLGNKKSLEKEDLWD-LNERDKAENIIPSFIENLIPEVEG 266
Query: 542 FARLWEEEVAKAGNKRKPSLLRVILKAYAARCMLYGFILLIMECVIKIAQPIFLGWLVEY 721
+ R ++ A K PS+L I K Y + G L+ + +++ P L L+ +
Sbjct: 267 YRRKIKKNPEAAIPKNHPSILIPIFKTYKFTLLAGGCYKLMFD-LLQFVAPELLRQLISF 325
>U41015-1|AAA82317.2| 1396|Caenorhabditis elegans Multidrug
resistance protein familyprotein 6 protein.
Length = 1396
Score = 29.5 bits (63), Expect = 3.0
Identities = 30/112 (26%), Positives = 53/112 (47%), Gaps = 2/112 (1%)
Frame = +2
Query: 395 HPRA--SANPLSALTFTWTLPVFWSSLKKELEEQDLYEPLDEHSSGPLGDKFARLWEEEV 568
HP + SA +S++ F++ + +W + + DL L++ S G A+ E +
Sbjct: 25 HPSSEDSAGLISSILFSF-VGFYWWRTRNAQTDTDL---LEKPSKGISAKYAAQKLESKW 80
Query: 569 AKAGNKRKPSLLRVILKAYAARCMLYGFILLIMECVIKIAQPIFLGWLVEYY 724
+G KR L+ V M + I L +E + ++AQP+ L L+ YY
Sbjct: 81 ISSGPKRTHFLVGV-WHCTKVSVMAHA-ISLCLEELTRVAQPLLLRELMSYY 130
>Z78200-10|CAN86608.1| 1312|Caenorhabditis elegans Hypothetical
protein T04H1.4b protein.
Length = 1312
Score = 29.1 bits (62), Expect = 3.9
Identities = 14/43 (32%), Positives = 26/43 (60%)
Frame = -3
Query: 303 FNKLRHDPFVTQYFLNIYFKSIQKLPTLSL*FQKSQKNLTGHE 175
F+KLR+D + + L ++QKL T+ ++K +++LT E
Sbjct: 579 FHKLRNDKKIMEEDLRDVQLNVQKLETMQHQYRKQEESLTAQE 621
>Z78200-9|CAB01581.1| 1298|Caenorhabditis elegans Hypothetical
protein T04H1.4a protein.
Length = 1298
Score = 29.1 bits (62), Expect = 3.9
Identities = 14/43 (32%), Positives = 26/43 (60%)
Frame = -3
Query: 303 FNKLRHDPFVTQYFLNIYFKSIQKLPTLSL*FQKSQKNLTGHE 175
F+KLR+D + + L ++QKL T+ ++K +++LT E
Sbjct: 565 FHKLRNDKKIMEEDLRDVQLNVQKLETMQHQYRKQEESLTAQE 607
>Z75312-1|CAA99730.1| 1298|Caenorhabditis elegans RAD50 homologue
ceRAD50 protein.
Length = 1298
Score = 29.1 bits (62), Expect = 3.9
Identities = 14/43 (32%), Positives = 26/43 (60%)
Frame = -3
Query: 303 FNKLRHDPFVTQYFLNIYFKSIQKLPTLSL*FQKSQKNLTGHE 175
F+KLR+D + + L ++QKL T+ ++K +++LT E
Sbjct: 565 FHKLRNDKKIMEEDLRDVQLNVQKLETMQHQYRKQEESLTAQE 607
>Z46793-4|CAA86773.1| 889|Caenorhabditis elegans Hypothetical
protein F45H7.6 protein.
Length = 889
Score = 29.1 bits (62), Expect = 3.9
Identities = 10/30 (33%), Positives = 20/30 (66%)
Frame = -3
Query: 288 HDPFVTQYFLNIYFKSIQKLPTLSL*FQKS 199
H ++ +F N+++KS+QK P + F++S
Sbjct: 623 HRCYIDVFFTNVFYKSLQKRPVTLMDFKES 652
>Z34800-5|CAA84325.1| 889|Caenorhabditis elegans Hypothetical
protein F45H7.6 protein.
Length = 889
Score = 29.1 bits (62), Expect = 3.9
Identities = 10/30 (33%), Positives = 20/30 (66%)
Frame = -3
Query: 288 HDPFVTQYFLNIYFKSIQKLPTLSL*FQKS 199
H ++ +F N+++KS+QK P + F++S
Sbjct: 623 HRCYIDVFFTNVFYKSLQKRPVTLMDFKES 652
>U39677-1|AAC47961.2| 457|Caenorhabditis elegans Hypothetical
protein C16E9.2a protein.
Length = 457
Score = 29.1 bits (62), Expect = 3.9
Identities = 19/69 (27%), Positives = 35/69 (50%), Gaps = 2/69 (2%)
Frame = +1
Query: 274 YERVMSQFIK*EANKTPVVKLLTSNSKKQ--HGVLQKKKSPCSPQSFSKSIVSLNFHLDL 447
Y V I E ++ P KL + Q HG+ +KK++ C+P + + V+L ++ L
Sbjct: 373 YPEVEGSNIDDELDEGPTNKLWSMRGFAQVWHGLREKKRAECTPLNAFLTYVTLPWNSIL 432
Query: 448 ASILEQFEK 474
+L + +K
Sbjct: 433 NDLLSERQK 441
>U49941-10|AAB53870.1| 73|Caenorhabditis elegans Hypothetical
protein K10B3.1a protein.
Length = 73
Score = 28.7 bits (61), Expect = 5.2
Identities = 14/37 (37%), Positives = 21/37 (56%)
Frame = -3
Query: 327 HRCFICLLFNKLRHDPFVTQYFLNIYFKSIQKLPTLS 217
H+C +C++ NK + PF Y + F SI+ P LS
Sbjct: 39 HKCTVCMVRNK-KQFPF---YVTRLIFHSIESFPRLS 71
>AY130758-3|AAN61519.1| 10578|Caenorhabditis elegans 1MDa_1 protein
protein.
Length = 10578
Score = 27.9 bits (59), Expect = 9.0
Identities = 13/38 (34%), Positives = 20/38 (52%)
Frame = +1
Query: 340 TSNSKKQHGVLQKKKSPCSPQSFSKSIVSLNFHLDLAS 453
T K++ +++KKK PQ SK + S +DL S
Sbjct: 10171 TKEPKEKKKIIKKKKDTTKPQEASKELSSDESRIDLES 10208
>AY130758-2|AAN61518.1| 18519|Caenorhabditis elegans 2MDa_2 protein
protein.
Length = 18519
Score = 27.9 bits (59), Expect = 9.0
Identities = 13/38 (34%), Positives = 20/38 (52%)
Frame = +1
Query: 340 TSNSKKQHGVLQKKKSPCSPQSFSKSIVSLNFHLDLAS 453
T K++ +++KKK PQ SK + S +DL S
Sbjct: 10191 TKEPKEKKKIIKKKKDTTKPQEASKELSSDESRIDLES 10228
>AY130758-1|AAN61517.1| 18534|Caenorhabditis elegans 2MDa_1 protein
protein.
Length = 18534
Score = 27.9 bits (59), Expect = 9.0
Identities = 13/38 (34%), Positives = 20/38 (52%)
Frame = +1
Query: 340 TSNSKKQHGVLQKKKSPCSPQSFSKSIVSLNFHLDLAS 453
T K++ +++KKK PQ SK + S +DL S
Sbjct: 10191 TKEPKEKKKIIKKKKDTTKPQEASKELSSDESRIDLES 10228
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,788,995
Number of Sequences: 27780
Number of extensions: 377597
Number of successful extensions: 1045
Number of sequences better than 10.0: 22
Number of HSP's better than 10.0 without gapping: 1000
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1045
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1977346024
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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