Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P16_F_I23
         (824 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC13G6.01c |rad8|SPAC5H10.14c|ubiquitin-protein ligase E3 |Sch...    31   0.15 
SPCC962.01 ||SPCP31B10.09|C2 domain protein|Schizosaccharomyces ...    27   2.4  
SPCC18.02 |||membrane transporter|Schizosaccharomyces pombe|chr ...    27   4.3  
SPBC32F12.01c ||SPBC685.10c|inositol phosphosphingolipid phospho...    27   4.3  
SPBC15C4.04c |||amino acid permease, unknown 10|Schizosaccharomy...    26   5.6  
SPCC417.08 |tef3||translation elongation factor eEF3|Schizosacch...    25   9.9  

>SPAC13G6.01c |rad8|SPAC5H10.14c|ubiquitin-protein ligase E3
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1133

 Score = 31.5 bits (68), Expect = 0.15
 Identities = 13/36 (36%), Positives = 22/36 (61%)
 Frame = +3

Query: 561 YGTKKAWHLTGCILVTATFPLLFIRCWGCWFNENTQ 668
           YG++K   L  C++ T+T PL+ I  +G   +E +Q
Sbjct: 603 YGSEKPLDLKSCVIDTSTAPLIIITSYGVLLSEFSQ 638


>SPCC962.01 ||SPCP31B10.09|C2 domain protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 1429

 Score = 27.5 bits (58), Expect = 2.4
 Identities = 14/60 (23%), Positives = 36/60 (60%), Gaps = 2/60 (3%)
 Frame = +2

Query: 329 VDSSASYKR--RWWRVSQNVLYGLGHVYNDLCAAMWFSYMLLFFQAVLDMRAVVAGAMLL 502
           +++ +SYK   +WW+ S ++L  +  + + + + +WF + +LFF  ++    +V G+ ++
Sbjct: 189 LETYSSYKLTGQWWQ-STSILLAVS-ILSWIASKLWFRFFILFF--IIITGTIVYGSCMI 244


>SPCC18.02 |||membrane transporter|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 448

 Score = 26.6 bits (56), Expect = 4.3
 Identities = 13/29 (44%), Positives = 18/29 (62%)
 Frame = +3

Query: 540 VGVLADKYGTKKAWHLTGCILVTATFPLL 626
           +G LADK+ T+K   L G I +T+   LL
Sbjct: 75  IGFLADKFLTRKVPMLIGLIFLTSATALL 103


>SPBC32F12.01c ||SPBC685.10c|inositol phosphosphingolipid
           phospholipase C |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 424

 Score = 26.6 bits (56), Expect = 4.3
 Identities = 12/31 (38%), Positives = 16/31 (51%)
 Frame = +2

Query: 398 HVYNDLCAAMWFSYMLLFFQAVLDMRAVVAG 490
           HV    C   W   ++LFF  +L + AVV G
Sbjct: 351 HVAIAWCDPAWLKVIILFFTVMLTIAAVVNG 381


>SPBC15C4.04c |||amino acid permease, unknown 10|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 542

 Score = 26.2 bits (55), Expect = 5.6
 Identities = 11/39 (28%), Positives = 17/39 (43%)
 Frame = +3

Query: 681 WMPLYYAVLIIFFQIGWAVVQISHLAMIPSITDNLQVRA 797
           W P+ ++ L  F  + W +      A I    +N  VRA
Sbjct: 256 WHPIGFSFLFGFLSVAWCMTDYDATAHIAEEIENAAVRA 294


>SPCC417.08 |tef3||translation elongation factor
           eEF3|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1047

 Score = 25.4 bits (53), Expect = 9.9
 Identities = 15/57 (26%), Positives = 26/57 (45%)
 Frame = +2

Query: 185 NQEFSFFYLLLILIDECVCK*KMSGKYGATDVNGTTCDIQEEIVVDNEVDSSASYKR 355
           N EFS  Y   IL++    + K   +YG    NG+        +V+ +V+   ++ R
Sbjct: 437 NCEFSLAYGAKILLNRTRLRLKRGRRYGLCGPNGSGKSTLMRAIVNGQVEGFPTHLR 493


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,485,465
Number of Sequences: 5004
Number of extensions: 73744
Number of successful extensions: 190
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 186
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 190
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 404442380
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)