Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P16_F_I23
         (824 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_01_0475 + 3656628-3656791,3656944-3657013,3657114-3657310,365...    62   5e-10
07_03_1019 + 23337543-23337697,23338315-23338384,23338555-233387...    48   7e-06
10_08_0750 - 20293046-20293102,20293319-20293501                       29   3.4  
05_01_0147 - 981697-983739                                             29   4.5  
06_03_1130 - 27826384-27827039,27827800-27828031,27828120-278284...    29   5.9  
03_01_0617 + 4532651-4532893,4534713-4534939,4535077-4535150,453...    29   5.9  
08_01_0300 + 2427524-2427827,2429066-2429274,2429512-2430150           28   7.8  

>03_01_0475 +
           3656628-3656791,3656944-3657013,3657114-3657310,
           3657409-3657484,3657794-3657877,3658247-3658326,
           3658422-3658548,3658727-3658786,3658874-3658924,
           3659013-3659171,3659296-3659428,3659545-3659717
          Length = 457

 Score = 62.1 bits (144), Expect = 5e-10
 Identities = 33/97 (34%), Positives = 48/97 (49%)
 Frame = +3

Query: 525 LQPLVVGVLADKYGTKKAWHLTGCILVTATFPLLFIRCWGCWFNENTQYLYWWMPLYYAV 704
           L  ++ G + D++G  K WH+ G ILV  +F  +F  C  C       YL     + Y+ 
Sbjct: 70  LMTILAGEMIDRFGHFKLWHIGGSILVGISFSSVFGGCLLCTVLGTDSYLV--RTIGYSF 127

Query: 705 LIIFFQIGWAVVQISHLAMIPSITDNLQVRAELTSXR 815
               F IGWA  Q+SH++M+  +T N   R  L S R
Sbjct: 128 FAAVFNIGWAATQVSHMSMVNCMTLNSTSRVALASCR 164



 Score = 49.2 bits (112), Expect = 4e-06
 Identities = 22/49 (44%), Positives = 32/49 (65%)
 Frame = +2

Query: 386 YGLGHVYNDLCAAMWFSYMLLFFQAVLDMRAVVAGAMLLLGQVVDALAT 532
           YG+GH+ ND+ +A WF+Y+LLF Q +  +    A  ++L GQV D L T
Sbjct: 25  YGVGHMLNDITSACWFTYLLLFLQEI-GLAPRDAAIVMLSGQVADGLMT 72


>07_03_1019 +
           23337543-23337697,23338315-23338384,23338555-23338740,
           23339006-23339080,23339161-23339240,23339357-23339483,
           23340608-23340667,23341926-23341976,23342048-23342206,
           23342528-23342660,23343097-23343166,23343516-23343570
          Length = 406

 Score = 48.4 bits (110), Expect = 7e-06
 Identities = 25/76 (32%), Positives = 37/76 (48%)
 Frame = +3

Query: 534 LVVGVLADKYGTKKAWHLTGCILVTATFPLLFIRCWGCWFNENTQYLYWWMPLYYAVLII 713
           + VG L D++G  K WH  G ILV  +F  +F  C  C              + Y+    
Sbjct: 70  IFVGELIDRFGHFKLWHAGGSILVAISFSSVFGSCLPCKLTGTISST--METVGYSTFAA 127

Query: 714 FFQIGWAVVQISHLAM 761
            F +GWAV QI++L++
Sbjct: 128 IFNVGWAVTQIANLSL 143



 Score = 42.7 bits (96), Expect = 3e-04
 Identities = 18/49 (36%), Positives = 30/49 (61%)
 Frame = +2

Query: 386 YGLGHVYNDLCAAMWFSYMLLFFQAVLDMRAVVAGAMLLLGQVVDALAT 532
           YG GH+ ND+ ++ WF+Y+L+F   +  +    A  ++L GQ+ D  AT
Sbjct: 22  YGSGHMLNDITSSCWFTYLLVFLTDI-GLSPSDAAVVMLSGQLADGFAT 69


>10_08_0750 - 20293046-20293102,20293319-20293501
          Length = 79

 Score = 29.5 bits (63), Expect = 3.4
 Identities = 14/26 (53%), Positives = 17/26 (65%)
 Frame = -1

Query: 449 TAACMRTTSQRRGRCKHALVRKARSD 372
           TAA M+TTS R  R +H L+R   SD
Sbjct: 14  TAAAMKTTSDRLHRRRHQLLRPQTSD 39


>05_01_0147 - 981697-983739
          Length = 680

 Score = 29.1 bits (62), Expect = 4.5
 Identities = 20/58 (34%), Positives = 24/58 (41%)
 Frame = +1

Query: 385 LRTRACLQRPLRCDVVLIHAAVLSSSPGHESCRSWSYAASRTSCRCTCNPWLWEFWLI 558
           L T+    R  RC + L  A   S S G     S S   S TS     NPW  E W++
Sbjct: 322 LDTKDDKDRSQRCTMPLELAIAESVSRGKLVAGSGSGTLSSTSVPTYANPWYVEVWVL 379


>06_03_1130 - 27826384-27827039,27827800-27828031,27828120-27828491,
            27829243-27829449,27829611-27829704,27829806-27829870,
            27829946-27830398,27830467-27830760,27830837-27831295,
            27831367-27831588,27831755-27831968,27832039-27832494,
            27833280-27833389,27833468-27833644,27833758-27833979,
            27834048-27834167,27834274-27834383,27834552-27834607,
            27835252-27835440,27835602-27835775,27836066-27836281,
            27837066-27837106,27837971-27837986,27838330-27838415,
            27838737-27838910,27839093-27839149,27839720-27840064,
            27840175-27840216,27840377-27840496,27840575-27840724,
            27840830-27841534,27841609-27841954,27842978-27843080,
            27844817-27844860,27845905-27846101,27846322-27846344,
            27846802-27847122,27847406-27847579,27847843-27848047,
            27848817-27848880,27850097-27850278,27850291-27850350,
            27850688-27850748,27851249-27851313,27851491-27851569,
            27851656-27852021,27852442-27852790,27852887-27852989,
            27853103-27853373,27854296-27854405,27854515-27854652
          Length = 3364

 Score = 28.7 bits (61), Expect = 5.9
 Identities = 12/32 (37%), Positives = 19/32 (59%)
 Frame = +2

Query: 662  HTVFVLVDATILCGPNYIFPNWLGRGTNLTSG 757
            H +  L+  TI+CG + + PN LGR  ++  G
Sbjct: 2295 HVLSHLILETIICGKSMLVPNILGRDDSMEIG 2326


>03_01_0617 + 4532651-4532893,4534713-4534939,4535077-4535150,
            4535753-4535809,4535940-4536280,4536979-4537047,
            4537152-4537219,4537404-4539569,4540101-4540178,
            4540326-4540437,4540722-4540772,4540886-4540936
          Length = 1178

 Score = 28.7 bits (61), Expect = 5.9
 Identities = 18/47 (38%), Positives = 26/47 (55%)
 Frame = -3

Query: 552  PKLPQPGVASASTTCPRSSIAPATTALMSRTA*KNSSMYENHIAAQR 412
            PKLPQ G  +A  +  + SI+PA     SR    N+S+ EN  + +R
Sbjct: 1009 PKLPQNGSRNAIGSRTQKSISPAENEERSR----NNSLIENDASRKR 1051


>08_01_0300 + 2427524-2427827,2429066-2429274,2429512-2430150
          Length = 383

 Score = 28.3 bits (60), Expect = 7.8
 Identities = 14/38 (36%), Positives = 20/38 (52%)
 Frame = -3

Query: 594 IQSNAMPS*FRIYQPKLPQPGVASASTTCPRSSIAPAT 481
           + S+ +P       P  P P + SAS T P S++AP T
Sbjct: 210 LSSSLVPPPVPAMAPVAPGPVLTSASATLPVSAVAPQT 247


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,699,702
Number of Sequences: 37544
Number of extensions: 475425
Number of successful extensions: 1221
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 1178
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1220
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2268190812
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)