Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P16_F_I17
(871 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC7D4.07c |trx1||cytosolic thioredoxin Trx1 |Schizosaccharomyc... 72 9e-14
SPBC12D12.07c |trx2||mitochondrial thioredoxin Trx2|Schizosaccha... 57 4e-09
SPBC577.08c |txl1|trx3|thioredoxin-like I protein Txl1|Schizosac... 56 7e-09
SPAC1F5.02 |||protein disulfide isomerase|Schizosaccharomyces po... 52 1e-07
SPBC26H8.06 |grx4||glutaredoxin Grx4|Schizosaccharomyces pombe|c... 47 3e-06
SPAC17H9.14c |||protein disulfide isomerase|Schizosaccharomyces ... 42 1e-04
SPBC18E5.14c |||sequence orphan|Schizosaccharomyces pombe|chr 2|... 33 0.053
SPAC13F5.05 |||thioredoxin family protein|Schizosaccharomyces po... 32 0.12
SPBC3D6.13c |||protein disulfide isomerase |Schizosaccharomyces ... 29 0.65
SPCC794.03 |||amino acid permease, unknown 13|Schizosaccharomyce... 27 3.5
SPAC167.07c ||SPAC57A7.03c|ubiquitin-protein ligase E3 |Schizosa... 27 4.6
SPAPB1A10.11c |||glutamyl-tRNA synthetase, mitochondrial|Schizos... 27 4.6
SPAC18G6.11c |rrn3||ribosomal DNA |Schizosaccharomyces pombe|chr... 26 6.1
SPBP4H10.15 |||aconitate hydratase|Schizosaccharomyces pombe|chr... 26 8.0
SPBC354.05c |sre2||membrane-tethered transcription factor |Schiz... 26 8.0
>SPAC7D4.07c |trx1||cytosolic thioredoxin Trx1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 103
Score = 72.1 bits (169), Expect = 9e-14
Identities = 34/90 (37%), Positives = 51/90 (56%)
Frame = +2
Query: 122 IKDSDDLKTRLAEAGDKLVVIDFMATWCGPCKMIGPKLDEIAAEMXXXXXXXXXXXXXXX 301
+ DS + K+ + + DKLVV+DF ATWCGPCK I PK ++ +
Sbjct: 5 VSDSSEFKSIVCQ--DKLVVVDFFATWCGPCKAIAPKFEQF-SNTYSDATFIKVDVDQLS 61
Query: 302 XXASEYNINSMPTFVFVKNGKKLDEFSGAN 391
A+E +++MP+F KNG+K++E GAN
Sbjct: 62 EIAAEAGVHAMPSFFLYKNGEKIEEIVGAN 91
>SPBC12D12.07c |trx2||mitochondrial thioredoxin
Trx2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 121
Score = 56.8 bits (131), Expect = 4e-09
Identities = 28/91 (30%), Positives = 47/91 (51%)
Frame = +2
Query: 122 IKDSDDLKTRLAEAGDKLVVIDFMATWCGPCKMIGPKLDEIAAEMXXXXXXXXXXXXXXX 301
++ D TR++ DK+ V+DF A WCGPCK + P L+++ +E
Sbjct: 22 VESFGDYNTRIS--ADKVTVVDFYADWCGPCKYLKPFLEKL-SEQNQKASFIAVNADKFS 78
Query: 302 XXASEYNINSMPTFVFVKNGKKLDEFSGANV 394
A + + ++PT V + G++LD GA+V
Sbjct: 79 DIAQKNGVYALPTMVLFRKGQELDRIVGADV 109
>SPBC577.08c |txl1|trx3|thioredoxin-like I protein
Txl1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 290
Score = 56.0 bits (129), Expect = 7e-09
Identities = 26/73 (35%), Positives = 38/73 (52%), Gaps = 1/73 (1%)
Frame = +2
Query: 176 VVIDFMATWCGPCKMIGPKLDEIAAEMXXXXXXXXXXXXXXXXX-ASEYNINSMPTFVFV 352
+ +D A WCGPCK I P ++A++ AS + +MPTFVF
Sbjct: 22 LAVDCYADWCGPCKAISPLFSQLASKYASPKFVFAKVNVDEQRQIASGLGVKAMPTFVFF 81
Query: 353 KNGKKLDEFSGAN 391
+NGK++D +GAN
Sbjct: 82 ENGKQIDMLTGAN 94
>SPAC1F5.02 |||protein disulfide isomerase|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 492
Score = 52.0 bits (119), Expect = 1e-07
Identities = 24/74 (32%), Positives = 37/74 (50%), Gaps = 1/74 (1%)
Frame = +2
Query: 167 DKLVVIDFMATWCGPCKMIGPKLDEIAAEM-XXXXXXXXXXXXXXXXXASEYNINSMPTF 343
DK++++ F A WCG CK + P+ + A E+ SEY+I PT
Sbjct: 39 DKVLMVKFYAPWCGHCKALAPEYESAADELEKDGISLVEVDCTEEGDLCSEYSIRGYPTL 98
Query: 344 VFVKNGKKLDEFSG 385
KNGK++ ++SG
Sbjct: 99 NVFKNGKQISQYSG 112
Score = 36.7 bits (81), Expect = 0.004
Identities = 19/68 (27%), Positives = 31/68 (45%)
Frame = +2
Query: 170 KLVVIDFMATWCGPCKMIGPKLDEIAAEMXXXXXXXXXXXXXXXXXASEYNINSMPTFVF 349
K V+++F A WCG CK + P +++A E S +I+ PT +F
Sbjct: 374 KDVLVEFYAPWCGHCKNLAPTYEKLAEEYSDDSNVVVAKIDATENDIS-VSISGFPTIMF 432
Query: 350 VKNGKKLD 373
K K++
Sbjct: 433 FKANDKVN 440
>SPBC26H8.06 |grx4||glutaredoxin Grx4|Schizosaccharomyces pombe|chr
2|||Manual
Length = 244
Score = 47.2 bits (107), Expect = 3e-06
Identities = 23/94 (24%), Positives = 42/94 (44%)
Frame = +2
Query: 110 MSIHIKDSDDLKTRLAEAGDKLVVIDFMATWCGPCKMIGPKLDEIAAEMXXXXXXXXXXX 289
MS+ I + + L +++++++F A W PCK + D+ A +
Sbjct: 1 MSVEITFVEQFQEILQNGKEQIILLNFYAPWAAPCKQMNQVFDQFAKD-TKNAVFLKIEA 59
Query: 290 XXXXXXASEYNINSMPTFVFVKNGKKLDEFSGAN 391
A +++N++P FV + K L SGAN
Sbjct: 60 EKFSDIAESFDVNAVPLFVLIHGAKVLARISGAN 93
>SPAC17H9.14c |||protein disulfide isomerase|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 359
Score = 41.9 bits (94), Expect = 1e-04
Identities = 25/94 (26%), Positives = 44/94 (46%), Gaps = 3/94 (3%)
Frame = +2
Query: 116 IHIKDSDDLKTRLAEAGDKLVVIDFMATWCGPCKMIGPKLDEIAA--EMXXXXXXXXXXX 289
+ ++ ++L+ + A K +I+F ATWCG CK + P +E+ A E
Sbjct: 23 VELQSLNELENTI-RASKKGALIEFYATWCGHCKSLAPVYEELGALFEDHNDVLIGKIDA 81
Query: 290 XXXXXXASEYNINSMPTFV-FVKNGKKLDEFSGA 388
A +Y+I PT + F +G + ++S A
Sbjct: 82 DTHSDVADKYHITGFPTLIWFPPDGSEPVQYSNA 115
Score = 30.3 bits (65), Expect = 0.37
Identities = 10/25 (40%), Positives = 16/25 (64%)
Frame = +2
Query: 170 KLVVIDFMATWCGPCKMIGPKLDEI 244
K V+++F A WCG CK + P + +
Sbjct: 159 KDVLVEFYADWCGYCKRLAPTYETL 183
>SPBC18E5.14c |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 127
Score = 33.1 bits (72), Expect = 0.053
Identities = 20/75 (26%), Positives = 36/75 (48%), Gaps = 4/75 (5%)
Frame = -2
Query: 561 KLISSNSLQTLKTFFIYIL-KTYTCFFFKFHLSFHRRLRTTLVSIYLCLRIVVL---SLS 394
+L++ +S + + +Y+L KTYT +FF SF R ++ L+ C + L
Sbjct: 12 ELLNDSSSNMIWLYEVYMLYKTYTSYFFMSSKSFVRGVKRYLIYFCYCANFIALFRVIFG 71
Query: 393 TLAPENSSSFLPFLT 349
T+ + PF+T
Sbjct: 72 TIFVYSPDGITPFMT 86
>SPAC13F5.05 |||thioredoxin family protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 363
Score = 31.9 bits (69), Expect = 0.12
Identities = 22/90 (24%), Positives = 34/90 (37%), Gaps = 2/90 (2%)
Frame = +2
Query: 128 DSDDLKTRLAEAGDKLVVIDFMATWCGPCKMIGPKLDEIAAEMXXXXXXXXXXXXXXXXX 307
+S + + + G LVV F A WCG CK + P ++A+ +
Sbjct: 37 NSKNFRKFVKAKGPSLVV--FYAPWCGYCKKLVPTYQKLASNLHSLLPVTAVDCDADQNR 94
Query: 308 A--SEYNINSMPTFVFVKNGKKLDEFSGAN 391
A S+Y + PT V K S +
Sbjct: 95 AVCSQYQVQGFPTIKLVYPSSKGSSLSSTD 124
>SPBC3D6.13c |||protein disulfide isomerase |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 726
Score = 29.5 bits (63), Expect = 0.65
Identities = 18/61 (29%), Positives = 26/61 (42%), Gaps = 3/61 (4%)
Frame = +2
Query: 203 CGPCKMIGPKLD---EIAAEMXXXXXXXXXXXXXXXXXASEYNINSMPTFVFVKNGKKLD 373
CG CK +GP D E A E +S NI ++PT +NG+ ++
Sbjct: 54 CGACKRLGPMWDNMVEKAKEQVEGSNFHFGEVDCSKELSSCANIRAVPTLYLYQNGEIVE 113
Query: 374 E 376
E
Sbjct: 114 E 114
>SPCC794.03 |||amino acid permease, unknown 13|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 554
Score = 27.1 bits (57), Expect = 3.5
Identities = 11/30 (36%), Positives = 18/30 (60%)
Frame = -2
Query: 594 IFCIPEAANTKKLISSNSLQTLKTFFIYIL 505
++C+P + +LI SNS Q +F+ Y L
Sbjct: 308 LYCLPPSNVMYELIKSNSQQPFVSFYAYAL 337
>SPAC167.07c ||SPAC57A7.03c|ubiquitin-protein ligase E3
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1029
Score = 26.6 bits (56), Expect = 4.6
Identities = 13/33 (39%), Positives = 20/33 (60%), Gaps = 2/33 (6%)
Frame = -2
Query: 588 CIPEAANTK--KLISSNSLQTLKTFFIYILKTY 496
CI TK KL+SSN+LQ + F+ ++K +
Sbjct: 401 CISSTFITKAFKLVSSNTLQAMSHFYATMIKLF 433
>SPAPB1A10.11c |||glutamyl-tRNA synthetase,
mitochondrial|Schizosaccharomyces pombe|chr 1|||Manual
Length = 526
Score = 26.6 bits (56), Expect = 4.6
Identities = 12/31 (38%), Positives = 19/31 (61%)
Frame = +2
Query: 515 IKNVFNVCNEFEDINFFVFAASGMQKILVLL 607
+KN + EFE I F+ + AS +Q+I L+
Sbjct: 397 LKNKVHTIKEFEKIVFYFYEASDLQQIRSLV 427
>SPAC18G6.11c |rrn3||ribosomal DNA |Schizosaccharomyces pombe|chr
1|||Manual
Length = 599
Score = 26.2 bits (55), Expect = 6.1
Identities = 18/69 (26%), Positives = 35/69 (50%)
Frame = -2
Query: 630 LFIELFDYNRTNIFCIPEAANTKKLISSNSLQTLKTFFIYILKTYTCFFFKFHLSFHRRL 451
L LF Y +N+ ++ + + + NSL +K+F +LKT+ C + +F + + +L
Sbjct: 317 LLYTLFSYLDSNL----KSTSRDRYLVYNSL--IKSFVNTVLKTFRCRYTQFLIFWASQL 370
Query: 450 RTTLVSIYL 424
I+L
Sbjct: 371 DPEFTDIFL 379
>SPBP4H10.15 |||aconitate hydratase|Schizosaccharomyces pombe|chr
2|||Manual
Length = 905
Score = 25.8 bits (54), Expect = 8.0
Identities = 25/77 (32%), Positives = 39/77 (50%), Gaps = 4/77 (5%)
Frame = +2
Query: 32 LTLTYIVIVIACSAGLEIRA-FV*KPKMSIHIK---DSDDLKTRLAEAGDKLVVIDFMAT 199
+T V+ A SAGL+ + F+ P S I+ + D + RL EAG + +A
Sbjct: 396 MTCVVDVVEQAISAGLKPKVPFLVTPG-SEQIRATIERDGITERLEEAGATV-----LAN 449
Query: 200 WCGPCKMIGPKLDEIAA 250
CGPC + + D+IA+
Sbjct: 450 ACGPCIGMWKRTDDIAS 466
>SPBC354.05c |sre2||membrane-tethered transcription factor
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 793
Score = 25.8 bits (54), Expect = 8.0
Identities = 17/54 (31%), Positives = 26/54 (48%)
Frame = -2
Query: 549 SNSLQTLKTFFIYILKTYTCFFFKFHLSFHRRLRTTLVSIYLCLRIVVLSLSTL 388
S SL ++ F + +L + CF L+ LR SIYL R+ + +S L
Sbjct: 710 SPSLHSILRFLLLLL-AFLCFAMHILLTPEATLRKWASSIYLSFRLECVFISFL 762
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,931,057
Number of Sequences: 5004
Number of extensions: 52816
Number of successful extensions: 147
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 137
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 142
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 434475230
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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