Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P16_F_I16
         (811 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC4F6.11c |||asparagine synthase |Schizosaccharomyces pombe|ch...    27   4.2  
SPBC3B8.05 |||diphthamide biosynthesis protein |Schizosaccharomy...    26   5.5  
SPBC106.09 |cut4|apc1|anaphase-promoting complex subunit Apc1|Sc...    26   7.3  
SPBC1773.04 |||flavonol reductase/cinnamoyl-CoA reductase family...    26   7.3  
SPAC8C9.04 |||sequence orphan|Schizosaccharomyces pombe|chr 1|||...    26   7.3  
SPAC6G9.14 |||RNA-binding protein|Schizosaccharomyces pombe|chr ...    25   9.6  
SPBC19G7.01c |msh2|swi8, mut3, SPBC24C6.12c|MutS protein homolog...    25   9.6  

>SPBC4F6.11c |||asparagine synthase |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 548

 Score = 26.6 bits (56), Expect = 4.2
 Identities = 15/56 (26%), Positives = 31/56 (55%)
 Frame = -3

Query: 563 NVDTHNIFKL*CVLYIIGITCGLI*SLLYD**LVVYQNTVNEVIEITEINAKLSSS 396
           N+D  +  ++ CVLY  G+ CG++  L++D   +V  N   ++I +   N + + +
Sbjct: 247 NLDCSHYSRV-CVLYSGGVDCGVLARLMHD---IVPNNESIDLINVAFENPRFTET 298


>SPBC3B8.05 |||diphthamide biosynthesis protein |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 436

 Score = 26.2 bits (55), Expect = 5.5
 Identities = 12/31 (38%), Positives = 20/31 (64%)
 Frame = -1

Query: 772 KNTFESYDRDVERAS*LTYHPRRTTVRDATQ 680
           +N  +  +RDVE A+ +T + +R+  R ATQ
Sbjct: 21  ENNLDGSNRDVENAALVTINSKRSAGRVATQ 51


>SPBC106.09 |cut4|apc1|anaphase-promoting complex subunit
           Apc1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1458

 Score = 25.8 bits (54), Expect = 7.3
 Identities = 12/30 (40%), Positives = 15/30 (50%)
 Frame = -3

Query: 263 LVNSIIYTYKASVTRH**DHKRLQFWFERF 174
           L +SI+Y     V  H    K+L FW  RF
Sbjct: 150 LFDSIVYVVGEIVVTHNKKEKKLSFWRSRF 179


>SPBC1773.04 |||flavonol reductase/cinnamoyl-CoA reductase
           family|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 336

 Score = 25.8 bits (54), Expect = 7.3
 Identities = 10/18 (55%), Positives = 12/18 (66%)
 Frame = -1

Query: 724 LTYHPRRTTVRDATQSAY 671
           LTY P   T +DAT+S Y
Sbjct: 313 LTYRPAEETFKDATESLY 330


>SPAC8C9.04 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 647

 Score = 25.8 bits (54), Expect = 7.3
 Identities = 12/44 (27%), Positives = 21/44 (47%)
 Frame = -2

Query: 780 KXTKTPLNHTTGM*NGHLSSRTIPGERQFAMRHKAPIPTMRDAM 649
           K  + P    +   +   +S  +PG ++ A+   APIPT  D +
Sbjct: 509 KHARRPSKQASAPSSPGTTSAAVPGGKKSAIEAAAPIPTSADTV 552


>SPAC6G9.14 |||RNA-binding protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 681

 Score = 25.4 bits (53), Expect = 9.6
 Identities = 15/41 (36%), Positives = 21/41 (51%), Gaps = 1/41 (2%)
 Frame = -1

Query: 385 FVLKYLYELNN-NHLTHDLAYLYKPVCYKKTVKIESDRTNK 266
           +VL+Y+ ELNN NH    ++Y    V    T K  S+   K
Sbjct: 540 YVLQYVLELNNPNHTEAIISYFLYKVRALSTQKFSSNVMEK 580


>SPBC19G7.01c |msh2|swi8, mut3, SPBC24C6.12c|MutS protein homolog
           2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 982

 Score = 25.4 bits (53), Expect = 9.6
 Identities = 9/22 (40%), Positives = 14/22 (63%)
 Frame = -1

Query: 385 FVLKYLYELNNNHLTHDLAYLY 320
           F  K L+ LNN+++ H  +Y Y
Sbjct: 568 FTTKRLHSLNNSYMDHQKSYRY 589


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,944,838
Number of Sequences: 5004
Number of extensions: 53406
Number of successful extensions: 115
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 113
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 115
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 394431430
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)