Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P16_F_I12
         (719 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC11E10.07c |||translation initiation factor eIF2B alpha subun...    29   0.51 
SPAC694.02 |||DEAD/DEAH box helicase|Schizosaccharomyces pombe|c...    29   0.67 
SPAC57A7.05 |||conserved protein |Schizosaccharomyces pombe|chr ...    27   2.0  
SPBC609.03 |||WD repeat protein, human IQWD1 family|Schizosaccha...    27   3.6  
SPBC18H10.15 |ppk23||serine/threonine protein kinase Ppk23|Schiz...    27   3.6  
SPBC106.09 |cut4|apc1|anaphase-promoting complex subunit Apc1|Sc...    26   4.7  
SPAC1002.17c |urg2||uracil phosphoribosyltransferase |Schizosacc...    26   4.7  
SPCC594.02c |||conserved fungal protein|Schizosaccharomyces pomb...    26   6.2  

>SPCC11E10.07c |||translation initiation factor eIF2B alpha
           subunit|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 341

 Score = 29.5 bits (63), Expect = 0.51
 Identities = 14/33 (42%), Positives = 19/33 (57%)
 Frame = +2

Query: 524 TNTLSEGAENSPFPSMGSTIFSSSITRGLKLIG 622
           +NTL EG +N+   S G  IF   +TR L  +G
Sbjct: 66  SNTLKEGVQNNISLSAGCDIFQRFVTRSLHDVG 98


>SPAC694.02 |||DEAD/DEAH box helicase|Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1717

 Score = 29.1 bits (62), Expect = 0.67
 Identities = 27/105 (25%), Positives = 44/105 (41%), Gaps = 2/105 (1%)
 Frame = +2

Query: 269  YNHKEVFTQNLFFANGDRWKVIRQNLTPLFSSSKMKNMFYLVEKCNHSLEDMLDKETKDL 448
            YN   V T + F         ++ +  P+F ++K     YL++   H   DML  E  +L
Sbjct: 1550 YNESMVGTTSSFLDKVPDGIFLKTSRLPIFEANKAPYNAYLLDFFTHGSVDML-IEQNNL 1608

Query: 449  QSIEIRSAMIRYT--LDSICSSAFGIETNTLSEGAENSPFPSMGS 577
            +  EI   +  ++  L +ICS    +      E  EN+     GS
Sbjct: 1609 KQSEIWFVLNDFSLVLATICSCLGNLLNLVTDEDIENAMSALEGS 1653


>SPAC57A7.05 |||conserved protein |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1337

 Score = 27.5 bits (58), Expect = 2.0
 Identities = 12/25 (48%), Positives = 15/25 (60%)
 Frame = +2

Query: 380 MFYLVEKCNHSLEDMLDKETKDLQS 454
           +F L E CNH+   ML K T+D  S
Sbjct: 405 LFILPETCNHAYNTMLCKLTEDTSS 429


>SPBC609.03 |||WD repeat protein, human IQWD1
           family|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 809

 Score = 26.6 bits (56), Expect = 3.6
 Identities = 12/42 (28%), Positives = 22/42 (52%)
 Frame = +2

Query: 143 PDRPYFGSFYGTEPALVLQNPEIIKQVFTKDFYYFNSRENRD 268
           P  PY+ +  GT P   L +  ++K+ F +D +  N+   +D
Sbjct: 205 PSNPYYFAIGGTHPYAFLYDRRMVKKSF-RDDWTMNTSPEKD 245


>SPBC18H10.15 |ppk23||serine/threonine protein kinase
           Ppk23|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 398

 Score = 26.6 bits (56), Expect = 3.6
 Identities = 9/37 (24%), Positives = 23/37 (62%)
 Frame = +2

Query: 371 MKNMFYLVEKCNHSLEDMLDKETKDLQSIEIRSAMIR 481
           +K+++ ++E   H L+ +LD   +D    E+++ M++
Sbjct: 145 LKDVYLVMEFMEHDLKTLLDNMPEDFLQSEVKTLMLQ 181


>SPBC106.09 |cut4|apc1|anaphase-promoting complex subunit
           Apc1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1458

 Score = 26.2 bits (55), Expect = 4.7
 Identities = 19/55 (34%), Positives = 28/55 (50%), Gaps = 3/55 (5%)
 Frame = +2

Query: 464 RSAMIRYTLDSICSSAF---GIETNTLSEGAENSPFPSMGSTIFSSSITRGLKLI 619
           RS  I YT ++  S  F   G+  +T+    E+  FP  GST F S +  G+ +I
Sbjct: 210 RSDSIHYTANTRLSEKFEEQGLAYSTIFSHIES--FPITGSTSFDSILGNGVLVI 262


>SPAC1002.17c |urg2||uracil phosphoribosyltransferase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 189

 Score = 26.2 bits (55), Expect = 4.7
 Identities = 19/68 (27%), Positives = 36/68 (52%)
 Frame = -2

Query: 214 DDLRILQD*GWFRTVKRSEVRSVRELLAQLLHHIS*EALQCDISHVVPKERHRFSVWHIF 35
           + + IL+D    R++K S+VRSV + +++ L + S + L+     +VP  R   S+   F
Sbjct: 14  EQIAILRD----RSLKPSQVRSVVDEISRFLAYESTKTLKSPSVSIVPVLRSGMSMMSAF 69

Query: 34  XLPIIEFP 11
              + + P
Sbjct: 70  SKVLPDVP 77


>SPCC594.02c |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 489

 Score = 25.8 bits (54), Expect = 6.2
 Identities = 8/19 (42%), Positives = 13/19 (68%)
 Frame = -3

Query: 639 PGHIERPINFSPRVIEELN 583
           P  +E+P+N +P V+E  N
Sbjct: 308 PAPLEKPVNLAPEVVEPTN 326


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,100,134
Number of Sequences: 5004
Number of extensions: 66061
Number of successful extensions: 227
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 217
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 227
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 337208592
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)