Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P16_F_I07
         (566 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_55959| Best HMM Match : No HMM Matches (HMM E-Value=.)             167   7e-42
SB_35369| Best HMM Match : Helicase_C (HMM E-Value=6.1e-05)            30   1.1  
SB_50663| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   1.5  
SB_11738| Best HMM Match : SH3_2 (HMM E-Value=3.7e-32)                 30   1.5  
SB_44156| Best HMM Match : Extensin_2 (HMM E-Value=0.05)               30   1.5  
SB_9375| Best HMM Match : Sec6 (HMM E-Value=0.35)                      29   2.6  

>SB_55959| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 100

 Score =  167 bits (405), Expect = 7e-42
 Identities = 79/95 (83%), Positives = 88/95 (92%), Gaps = 2/95 (2%)
 Frame = +2

Query: 194 RNVRSLEKV--CADLINGAKKQKLRVKGPVRMPTKILRITTRKTPCGEGSKTWDRFQMRI 367
           + VR+  KV  CADLI GAK++KL+VKGPVRMPTK LRITTRKTPCGEGSKTWDR++MRI
Sbjct: 6   KKVRTTRKVTVCADLIRGAKEKKLKVKGPVRMPTKFLRITTRKTPCGEGSKTWDRYEMRI 65

Query: 368 HKRVIDLHSPSEIVKQITSINIEPGVEVEVTIADA 472
           HKR+IDLHSPSEIVKQITSI+IEPGVEVEVTIADA
Sbjct: 66  HKRLIDLHSPSEIVKQITSISIEPGVEVEVTIADA 100


>SB_35369| Best HMM Match : Helicase_C (HMM E-Value=6.1e-05)
          Length = 584

 Score = 30.3 bits (65), Expect = 1.1
 Identities = 13/40 (32%), Positives = 19/40 (47%)
 Frame = +1

Query: 193 SQCALTREGLC*PHQWSQETEAACKGPSPHANQDPAYHHP 312
           S C     GLC P  +   ++ +  GPSP +  DP+   P
Sbjct: 412 SICLCAPSGLCVPIHFLPNSDPSLAGPSPSSKLDPSIRDP 451


>SB_50663| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 437

 Score = 29.9 bits (64), Expect = 1.5
 Identities = 16/53 (30%), Positives = 24/53 (45%), Gaps = 3/53 (5%)
 Frame = +1

Query: 163 YPPHQDHSYFSQCALTR---EGLC*PHQWSQETEAACKGPSPHANQDPAYHHP 312
           Y P   +SY + CA T+   +G        +   A+ +   PH N DPA+  P
Sbjct: 267 YDPQNPYSYGAYCAYTQAQPQGFNAQAYPYENNSASARPAMPHYNSDPAHTEP 319


>SB_11738| Best HMM Match : SH3_2 (HMM E-Value=3.7e-32)
          Length = 2436

 Score = 29.9 bits (64), Expect = 1.5
 Identities = 12/34 (35%), Positives = 21/34 (61%)
 Frame = +2

Query: 128 KDIEKPQAEVSPIHRIRITLTSRNVRSLEKVCAD 229
           + + K Q E + IH + +T   ++VRSLE+ C +
Sbjct: 663 RQLHKIQEESTRIHHLAVTALEKDVRSLEQRCLE 696


>SB_44156| Best HMM Match : Extensin_2 (HMM E-Value=0.05)
          Length = 1878

 Score = 29.9 bits (64), Expect = 1.5
 Identities = 10/29 (34%), Positives = 15/29 (51%)
 Frame = +1

Query: 232  HQWSQETEAACKGPSPHANQDPAYHHPEN 318
            H   +  +    GP PH+ Q P  HHP++
Sbjct: 1177 HHPHEPHQVQAMGPPPHSMQQPLLHHPQD 1205


>SB_9375| Best HMM Match : Sec6 (HMM E-Value=0.35)
          Length = 1049

 Score = 29.1 bits (62), Expect = 2.6
 Identities = 19/47 (40%), Positives = 23/47 (48%)
 Frame = -2

Query: 493 FYWRLCLRVGDGHLNLYTGLDVN*GDLFHDFRGRV*VDHSLVDSHLK 353
           FY  L L V D    L  G+D    DLF + R    VD+SLV   +K
Sbjct: 405 FYSNLVLEVSDNETELVNGIDQLWDDLFVESRR---VDYSLVSVKMK 448


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,527,171
Number of Sequences: 59808
Number of extensions: 377054
Number of successful extensions: 852
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 812
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 852
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1337207630
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)