Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P16_F_I05
         (379 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC29A4.11 |rga3||GTPase activating protein Rga3|Schizosaccharo...    25   3.0  
SPBC336.04 |cdc6|pol3, pold, mis10|DNA polymerase delta catalyti...    25   3.9  
SPCC5E4.05c |||serine hydrolase |Schizosaccharomyces pombe|chr 3...    25   3.9  
SPAC3C7.08c |elf1||AAA family ATPase ELf1|Schizosaccharomyces po...    24   9.1  

>SPAC29A4.11 |rga3||GTPase activating protein
           Rga3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 969

 Score = 25.4 bits (53), Expect = 3.0
 Identities = 12/43 (27%), Positives = 20/43 (46%)
 Frame = -2

Query: 237 DKSAPTLYSXXXXXXXXNTAPFTPFKISFEPSTCNIAPSFSPN 109
           D++ P + +         T+PF PF  S+  S  +   + SPN
Sbjct: 331 DRAEPIVMNGHMRSLHNATSPFRPFSPSYRSSDTHSPRTRSPN 373


>SPBC336.04 |cdc6|pol3, pold, mis10|DNA polymerase delta catalytic
            subunit Cdc6 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1086

 Score = 25.0 bits (52), Expect = 3.9
 Identities = 15/41 (36%), Positives = 21/41 (51%)
 Frame = +2

Query: 38   KHIKERQXPKXXLNILEXQHAAPVLGLKEGAILHVDGSKLI 160
            K+  E Q  K  L I E     P+LG K  ++LH D ++ I
Sbjct: 938  KYYLENQLSKPLLRIFE-----PILGEKASSLLHGDHTRTI 973


>SPCC5E4.05c |||serine hydrolase |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 378

 Score = 25.0 bits (52), Expect = 3.9
 Identities = 11/20 (55%), Positives = 12/20 (60%)
 Frame = +1

Query: 19  GVPVENEAHKGAXXAQXXAE 78
           GVPVE E+HK    A   AE
Sbjct: 306 GVPVEEESHKATSDAVPPAE 325


>SPAC3C7.08c |elf1||AAA family ATPase ELf1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1057

 Score = 23.8 bits (49), Expect = 9.1
 Identities = 12/30 (40%), Positives = 18/30 (60%)
 Frame = +2

Query: 149 SKLILKGVNGAVLFSRSQKKSEYNVGADLS 238
           ++LILK  N +  +  ++KKS  NV   LS
Sbjct: 688 TRLILKMTNASYTYPNAKKKSLDNVTVGLS 717


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 928,020
Number of Sequences: 5004
Number of extensions: 14391
Number of successful extensions: 29
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 28
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 29
length of database: 2,362,478
effective HSP length: 65
effective length of database: 2,037,218
effective search space used: 122233080
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)